Prupe.4G030300_v2.0.a1

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
1413599 .. 1416201
2603 bp
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UTR
Exon/CDS
Intron
Prupe.4G030300.1

Sequence Viewer

Length: 1608 bp
ATGGCCCTTCTTCAAGCTCACTCTGCTTCCCCCAACTGTCCAATTGTTGATTTTCACGTCCACCATGCTCAAAAATTGAAGGAATTGAAGGATGCACTGGCAAATGTTGGAGAAGATGAACTGCTGATTGCGGTTGATGCCATGCAGCACCTAGGCCTTGATCATCACTTCCGAGAGGAGATTGAAGCATTTCTGCAAAAGCAATATCATGCAAGAGCTTATGATAATTGCAATCATCAACTTCTTGAGGTTTCACTTCGTTTTCGACTCTTGAGACAACAAGGTTATCATGTAACCACAGATGTGTTTAACAAATTCAAGAACATCCAAGACTTGAAATCAGGACTAGACAAAGACATTGAGGGATTGGTGGGATTGTATGAAGCATCTCACTTGAGTTTCCAAGGAGAAGATGCACTTGATGAAGCCGGAAAGCTCAGCCACCAAATTCTTACTGCTTGGCTGCCAAACAATCTTGATGATCATCGAGCACCACTCGTAGCACATTCATTAAAGCACCCTTATCACAAGAGCTTGACAAGATTCATGGCTAAAAACTTTTTGGACTATTTCCAAGGCACAGAGAAATGGGCCAGTATTTTACAGGAGCTAGCAAAACTAGAGTTGAACGTGGTTGAATCTATAATCCGAAATGAAATCCTACAAATATCTAAGTGGTGGAAAGAACTAGGCTTGACAAAGGAGTTGAATTTTGTGAGAGACCAGCCAATTAAATGGTATACGTGGCCCATGGCATGCCTCACAGATCCAAGCTTATCAGAGGAAAGGCTTGAACTTACAAAATCGATCTCTCTTGTCTACATAATAGATGATATTTTTGATGTGCATGGAACACTCGACGAGCTCGTCCTCTTCACAGCAGCAGTTGAGAGATGGGATCTTGATGAGACTGATGAACTACCAGATTACATGAAGATAAGTTTTAAGGCTCTTTATGACATTACCAATGAAACCAGCGACAGGGCGTACAAAAGGCATGGGTGGAACCCTATAGAATCCCTTAAAAAATCGTGGGCAATATTGTGCAAGGCGTTCCTGTTAGAAGCACAATGGTTTAGGTGTGGGCATTTGCCAAACGCTGAAGACTACTTGAAGAATGGGGTTATCAGTACAGGGGTGCCTGCAGTTCTAACCCACGCCTTCTTCATATTGGGTCGCGGTATAACTCAGCAAGCCATAGATATTGTTGACAACATCAACACGCCTGGCATCATATCTTCAACGGCGACCATTCTACGGCTCTGGGATGACTTTGGAAGTGCCAAGGATGAGAACCAAAATGGGTATGATGGTTCGTACATACAGTGTTACGTGAATGAACACGAAGGTTGCTCAGATGAAGATGCAAGGGCTTACGTTATCCAAAAGATTTCAGATGAATGGAAGAGACTCAACCAAGAATGCTTCTCTTCAAATCCATTTTCAGAGTCTTTTACAAAACTTGCTCTCAATGTTGCTAGAATGGTGCCGATGATGTATGATTACAATACCCAACATCGCCTTCCAAGCCTTGAGGAGAACATGAAGTCGTTGCTTTTTGATAGTTTTCTTGCACAAGGGTTTCAGTCCCCAGGCCAGACGAAATAA

Protein Analysis

536

Amino Acids

61.44

Weight (kDa)

5.3

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 866
AccB1I GGYRCC 2 cut(s) 1138, 1486
AccI GTMKAC 2 cut(s) 740, 819
AccII CGCG 1 cut(s) 1179
AciI CCGC 2 cut(s) 131, 1179
AclWI GGATC 2 cut(s) 761, 906
AcsI RAATTY 3 cut(s) 314, 447, 709
AcuI CTGAAG 1 cut(s) 1122
AfaI GTAC 3 cut(s) 989, 1132, 1319
AfiI CCNNNNNNNGG 2 cut(s) 981, 1257
AjiI CACGTC 1 cut(s) 58
AjnI CCWGG 2 cut(s) 1225, 1591
AjuI GAANNNNNNNTTGG 2 cut(s) 1506, 1538
AleI CACNNNNGTG 1 cut(s) 302
AluBI AGCT 7 cut(s) 17, 218, 436, 534, 610, 774, 865
AluI AGCT 7 cut(s) 17, 218, 436, 534, 610, 774, 865
Alw21I GWGCWC 2 cut(s) 493, 867
Alw26I GTCTC 4 cut(s) 268, 714, 902, 1402
AlwI GGATC 2 cut(s) 761, 906
AoxI GGCC 5 cut(s) 3, 154, 591, 746, 1594
ApeKI GCWGC 3 cut(s) 145, 463, 881
ApoI RAATTY 3 cut(s) 314, 447, 709
Asp700I GAANNNNTTC 1 cut(s) 189
AspA2I CCTAGG 1 cut(s) 151
AspS9I GGNCC 3 cut(s) 4, 591, 747
AsuNHI GCTAGC 1 cut(s) 610
AvrII CCTAGG 1 cut(s) 151
BanI GGYRCC 2 cut(s) 1138, 1486
BanII GRGCYC 1 cut(s) 867
BbsI GAAGAC 1 cut(s) 1110
Bbv12I GWGCWC 2 cut(s) 493, 867
BbvI GCAGC 3 cut(s) 157, 450, 893
BccI CCATC 2 cut(s) 888, 1304
BceAI ACGGC 2 cut(s) 1260, 1274
BciT130I CCWGG 2 cut(s) 1227, 1593
BclI TGATCA 2 cut(s) 160, 481
BcoDI GTCTC 4 cut(s) 268, 714, 902, 1402
BfaI CTAG 6 cut(s) 152, 347, 611, 620, 689, 1479
BfmI CTRYAG 2 cut(s) 1011, 1143
BisI GCNGC 3 cut(s) 146, 464, 882
BlnI CCTAGG 1 cut(s) 151
BlpI GCTNAGC 1 cut(s) 437
BlsI GCNGC 3 cut(s) 147, 465, 883
Bme1390I CCNGG 2 cut(s) 1227, 1593
BmgBI CACGTC 1 cut(s) 58
BmgT120I GGNCC 3 cut(s) 4, 591, 747
BmiI GGNNCC 3 cut(s) 1007, 1140, 1488
BmrFI CCNGG 2 cut(s) 1227, 1593
BmsI GCATC 6 cut(s) 82, 127, 395, 403, 1239, 1354
BmtI GCTAGC 1 cut(s) 614
BpiI GAAGAC 1 cut(s) 1110
BplI GAGNNNNNCTC 2 cut(s) 480, 512
Bpu1102I GCTNAGC 1 cut(s) 437
BpuEI CTTGAG 4 cut(s) 266, 292, 415, 1553
Bsa29I ATCGAT 1 cut(s) 806
BsaAI YACGTR 2 cut(s) 744, 1333
BsaBI GATNNNNATC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 714
BsaJI CCNNGG 6 cut(s) 151, 403, 574, 750, 1284, 1591
Bsc4I CCNNNNNNNGG 2 cut(s) 981, 1257
Bse1I ACTGG 2 cut(s) 102, 594
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 2 cut(s) 1227, 1593
BseCI ATCGAT 1 cut(s) 806
BseDI CCNNGG 6 cut(s) 151, 403, 574, 750, 1284, 1591
BseGI GGATG 4 cut(s) 97, 324, 1273, 1294
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 2 cut(s) 981, 1257
BseMII CTCAG 3 cut(s) 451, 1202, 1368
BseNI ACTGG 2 cut(s) 102, 594
BseRI GAGGAG 2 cut(s) 191, 1550
BseXI GCAGC 3 cut(s) 157, 450, 893
Bsh1236I CGCG 1 cut(s) 1179
BshFI GGCC 5 cut(s) 5, 156, 593, 748, 1596
BshNI GGYRCC 2 cut(s) 1138, 1486
BshVI ATCGAT 1 cut(s) 806
BsiHKAI GWGCWC 2 cut(s) 493, 867
BsiSI CCGG 1 cut(s) 429
BslFI GGGAC 1 cut(s) 1573
BslI CCNNNNNNNGG 2 cut(s) 981, 1257
BsmAI GTCTC 4 cut(s) 268, 714, 902, 1402
BsmFI GGGAC 1 cut(s) 1573
BsmI GAATGC 1 cut(s) 1427
BsnI GGCC 5 cut(s) 5, 156, 593, 748, 1596
Bso31I GGTCTC 1 cut(s) 714
Bsp1286I GDGCHC 2 cut(s) 493, 867
Bsp143I GATC 5 cut(s) 160, 481, 766, 807, 898
Bsp1720I GCTNAGC 1 cut(s) 437
Bsp19I CCATGG 1 cut(s) 750
BspACI CCGC 2 cut(s) 131, 1179
BspANI GGCC 5 cut(s) 5, 156, 593, 748, 1596
BspCNI CTCAG 3 cut(s) 450, 1201, 1367
BspDI ATCGAT 1 cut(s) 806
BspFNI CGCG 1 cut(s) 1179
BspLI GGNNCC 3 cut(s) 1007, 1140, 1488
BspMAI CTGCAG 1 cut(s) 1147
BspOI GCTAGC 1 cut(s) 614
BspPI GGATC 2 cut(s) 761, 906
BspT107I GGYRCC 2 cut(s) 1138, 1486
BspTNI GGTCTC 1 cut(s) 714
BsrI ACTGG 2 cut(s) 102, 594
BssECI CCNNGG 6 cut(s) 151, 403, 574, 750, 1284, 1591
BssMI GATC 5 cut(s) 160, 481, 766, 807, 898
BssNAI GTATAC 1 cut(s) 741
BssT1I CCWWGG 5 cut(s) 151, 403, 574, 750, 1284
Bst1107I GTATAC 1 cut(s) 741
Bst2UI CCWGG 2 cut(s) 1227, 1593
Bst4CI ACNGT 2 cut(s) 38, 1326
Bst6I CTCTTC 3 cut(s) 878, 1400, 1435
BstBAI YACGTR 2 cut(s) 744, 1333
BstC8I GCNNGC 4 cut(s) 612, 757, 1143, 1194
BstDEI CTNAG 4 cut(s) 437, 672, 1188, 1354
BstDSI CCRYGG 1 cut(s) 750
BstF5I GGATG 4 cut(s) 97, 324, 1273, 1294
BstFNI CGCG 1 cut(s) 1179
BstKTI GATC 5 cut(s) 163, 484, 769, 810, 901
BstMAI GTCTC 4 cut(s) 268, 714, 902, 1402
BstMBI GATC 5 cut(s) 160, 481, 766, 807, 898
BstMWI GCNNNNNNNGC 3 cut(s) 23, 137, 1527
BstNI CCWGG 2 cut(s) 1227, 1593
BstNSI RCATGY 1 cut(s) 759
BstSCI CCNGG 2 cut(s) 1225, 1591
BstSFI CTRYAG 2 cut(s) 1011, 1143
BstUI CGCG 1 cut(s) 1179
BstV1I GCAGC 3 cut(s) 157, 450, 893
BstV2I GAAGAC 1 cut(s) 1110
BstX2I RGATCY 2 cut(s) 766, 898
BstXI CCANNNNNNTGG 1 cut(s) 735
BstYI RGATCY 2 cut(s) 766, 898
BstZ17I GTATAC 1 cut(s) 741
Bsu15I ATCGAT 1 cut(s) 806
BsuRI GGCC 5 cut(s) 5, 156, 593, 748, 1596
BsuTUI ATCGAT 1 cut(s) 806
BtgI CCRYGG 1 cut(s) 750
BtgZI GCGATG 1 cut(s) 1502
BtrI CACGTC 1 cut(s) 58
BtsCI GGATG 4 cut(s) 97, 324, 1273, 1294
BtsIMutI CAGTG 2 cut(s) 95, 1331
Cac8I GCNNGC 4 cut(s) 612, 757, 1143, 1194
Cfr13I GGNCC 3 cut(s) 4, 591, 747
ClaI ATCGAT 1 cut(s) 806
Csp6I GTAC 3 cut(s) 988, 1131, 1318
CviQI GTAC 3 cut(s) 988, 1131, 1318
DdeI CTNAG 4 cut(s) 437, 672, 1188, 1354
DpnI GATC 5 cut(s) 162, 483, 768, 809, 900
DpnII GATC 5 cut(s) 160, 481, 766, 807, 898
DrdI GACNNNNNNGTC 1 cut(s) 866
DseDI GACNNNNNNGTC 1 cut(s) 866
Eam1104I CTCTTC 3 cut(s) 878, 1400, 1435
EarI CTCTTC 3 cut(s) 878, 1400, 1435
Ecl136II GAGCTC 1 cut(s) 865
Eco130I CCWWGG 5 cut(s) 151, 403, 574, 750, 1284
Eco147I AGGCCT 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 867
Eco31I GGTCTC 1 cut(s) 714
Eco53kI GAGCTC 1 cut(s) 865
Eco57I CTGAAG 1 cut(s) 1122
EcoICRI GAGCTC 1 cut(s) 865
EcoRII CCWGG 2 cut(s) 1225, 1591
EcoT14I CCWWGG 5 cut(s) 151, 403, 574, 750, 1284
EcoT38I GRGCYC 1 cut(s) 867
ErhI CCWWGG 5 cut(s) 151, 403, 574, 750, 1284
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FaqI GGGAC 1 cut(s) 1573
FbaI TGATCA 2 cut(s) 160, 481
FblI GTMKAC 2 cut(s) 740, 819
Fnu4HI GCNGC 3 cut(s) 146, 464, 882
FokI GGATG 4 cut(s) 104, 311, 1280, 1301
FriOI GRGCYC 1 cut(s) 867
Fsp4HI GCNGC 3 cut(s) 146, 464, 882
FspBI CTAG 6 cut(s) 152, 347, 611, 620, 689, 1479
GluI GCNGC 3 cut(s) 146, 464, 882
HaeIII GGCC 5 cut(s) 5, 156, 593, 748, 1596
HapII CCGG 1 cut(s) 429
HincII GTYRAC 1 cut(s) 1210
HindII GTYRAC 1 cut(s) 1210
HindIII AAGCTT 1 cut(s) 772
HinfI GANTC 6 cut(s) 267, 543, 638, 1016, 1410, 1448
HpaII CCGG 1 cut(s) 429
Hpy166II GTNNAC 4 cut(s) 61, 741, 820, 1210
Hpy188I TCNGA 6 cut(s) 173, 650, 781, 1357, 1396, 1447
Hpy188III TCNNGA 6 cut(s) 245, 271, 319, 342, 476, 902
Hpy8I GTNNAC 4 cut(s) 61, 741, 820, 1210
Hpy99I CGWCG 1 cut(s) 863
HpyAV CCTTC 6 cut(s) 17, 73, 82, 1171, 1340, 1532
HpyCH4III ACNGT 2 cut(s) 38, 1326
HpyCH4IV ACGT 5 cut(s) 57, 630, 743, 1332, 1377
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 137, 1527
HpyF3I CTNAG 4 cut(s) 437, 672, 1188, 1354
HpySE526I ACGT 5 cut(s) 57, 630, 743, 1332, 1377
Ksp22I TGATCA 2 cut(s) 160, 481
Kzo9I GATC 5 cut(s) 160, 481, 766, 807, 898
LmnI GCTCC 1 cut(s) 607
Lsp1109I GCAGC 3 cut(s) 157, 450, 893
LweI GCATC 6 cut(s) 82, 127, 395, 403, 1239, 1354
MaeI CTAG 6 cut(s) 152, 347, 611, 620, 689, 1479
MaeII ACGT 5 cut(s) 57, 630, 743, 1332, 1377
MaeIII GTNAC 2 cut(s) 292, 1328
MalI GATC 5 cut(s) 162, 483, 768, 809, 900
MboI GATC 5 cut(s) 160, 481, 766, 807, 898
MfeI CAATTG 1 cut(s) 42
MflI RGATCY 2 cut(s) 766, 898
MhlI GDGCHC 2 cut(s) 493, 867
MluCI AATT 8 cut(s) 42, 74, 83, 226, 314, 447, 709, 729
MlyI GAGTC 3 cut(s) 261, 1404, 1457
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 7 cut(s) 169, 241, 355, 770, 775, 881, 1528
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 5 cut(s) 309, 512, 732, 945, 1023
MslI CAYNNNNRTG 1 cut(s) 302
MspI CCGG 1 cut(s) 429
MspR9I CCNGG 2 cut(s) 1227, 1593
MunI CAATTG 1 cut(s) 42
Mva1269I GAATGC 1 cut(s) 1427
MvaI CCWGG 2 cut(s) 1227, 1593
MvnI CGCG 1 cut(s) 1179
MwoI GCNNNNNNNGC 3 cut(s) 23, 137, 1527
NcoI CCATGG 1 cut(s) 750
NdeII GATC 5 cut(s) 160, 481, 766, 807, 898
NheI GCTAGC 1 cut(s) 610
NlaIV GGNNCC 3 cut(s) 1007, 1140, 1488
NspI RCATGY 1 cut(s) 759
OliI CACNNNNGTG 1 cut(s) 302
PaeI GCATGC 1 cut(s) 759
PceI AGGCCT 1 cut(s) 156
PcsI WCGNNNNNNNCGW 1 cut(s) 864
PctI GAATGC 1 cut(s) 1427
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 3 cut(s) 543, 638, 1016
PkrI GCNGC 3 cut(s) 147, 465, 883
PleI GAGTC 3 cut(s) 261, 1404, 1456
PpsI GAGTC 3 cut(s) 261, 1404, 1456
Ppu21I YACGTR 2 cut(s) 744, 1333
Psp124BI GAGCTC 1 cut(s) 867
Psp6I CCWGG 2 cut(s) 1225, 1591
PspGI CCWGG 2 cut(s) 1225, 1591
PspN4I GGNNCC 3 cut(s) 1007, 1140, 1488
PspPI GGNCC 3 cut(s) 4, 591, 747
PstI CTGCAG 1 cut(s) 1147
PsuI RGATCY 2 cut(s) 766, 898
RsaI GTAC 3 cut(s) 989, 1132, 1319
RsaNI GTAC 3 cut(s) 988, 1131, 1318
RseI CAYNNNNRTG 1 cut(s) 302
SacI GAGCTC 1 cut(s) 867
SaqAI TTAA 5 cut(s) 309, 512, 732, 945, 1023
SatI GCNGC 3 cut(s) 146, 464, 882
Sau3AI GATC 5 cut(s) 160, 481, 766, 807, 898
Sau96I GGNCC 3 cut(s) 4, 591, 747
SchI GAGTC 3 cut(s) 261, 1404, 1457
ScrFI CCNGG 2 cut(s) 1227, 1593
SduI GDGCHC 2 cut(s) 493, 867
SfaNI GCATC 6 cut(s) 82, 127, 395, 403, 1239, 1354
SfcI CTRYAG 2 cut(s) 1011, 1143
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 4 cut(s) 245, 271, 394, 1532
SmoI CTYRAG 4 cut(s) 245, 271, 394, 1532
SphI GCATGC 1 cut(s) 759
Sse9I AATT 8 cut(s) 42, 74, 83, 226, 314, 447, 709, 729
SseBI AGGCCT 1 cut(s) 156
SsiI CCGC 2 cut(s) 131, 1179
SspI AATATT 1 cut(s) 1041
SspMI CTAG 6 cut(s) 152, 347, 611, 620, 689, 1479
SstI GAGCTC 1 cut(s) 867
StuI AGGCCT 1 cut(s) 156
StyD4I CCNGG 2 cut(s) 1225, 1591
StyI CCWWGG 5 cut(s) 151, 403, 574, 750, 1284
TaaI ACNGT 2 cut(s) 38, 1326
TaiI ACGT 5 cut(s) 60, 633, 746, 1335, 1380
TaqI TCGA 4 cut(s) 265, 487, 806, 858
TasI AATT 8 cut(s) 42, 74, 83, 226, 314, 447, 709, 729
TatI WGTACW 1 cut(s) 1130
TfiI GAWTC 3 cut(s) 543, 638, 1016
Tru1I TTAA 5 cut(s) 309, 512, 732, 945, 1023
Tru9I TTAA 5 cut(s) 309, 512, 732, 945, 1023
TscAI CASTG 2 cut(s) 102, 1331
TseI GCWGC 3 cut(s) 145, 463, 881
TspRI CASTG 2 cut(s) 102, 1331
XapI RAATTY 3 cut(s) 314, 447, 709
XceI RCATGY 1 cut(s) 759
XmaJI CCTAGG 1 cut(s) 151
XmiI GTMKAC 2 cut(s) 740, 819
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 6 cut(s) 152, 347, 611, 620, 689, 1479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.