FvH4_3g03045

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
1624708 .. 1629243
4536 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03045.t1

Sequence Viewer

Length: 1200 bp
ATGAGCTTATACGAAGCTTCGCAGCTAGGTACAGAAGGAGAAGATACACTTGTTGAAGCTGAAAAGTTTAGTGGCCATCTGCTAAAGACTTCTCTGTCACATCTTGATCATCATCGAGCCAGAATTGTTGGAAATACATTGAGGAATCCTCATCACAAAAGCTTGGCCTCATTCATGGCCAGGAACTTTTTCGTTACTTCTCAAGCCACCAATTCATGGTTAAATTTGCTAAAAGAAGTAGCAAAAACAGATTTCAATATGGTCCGGTCTGTGCACCAGAAAGAAATAGTTCAAATTTCCAAATGGTGGAAGGAGCTTGGATTGTTTAAGGAACTGAAGTTTGCAAGAGATCAACCACTGAAATGGTACACTTGGTCCATGGCAGGCCTAACAGATCCAAAGTTATCAGAGGAGAGGGTTGAGCTCACAAAACCCATCTCTTTTGTCTATTTGATAGATGACATTTTCGATGTTTATGGAACCCTTGATGACCTCATTCTCTTCACAGAAGCTGTTAATAGATGGGAAATTACTGCTATAGACCACTTACCAGACTATATGAAGATATGCTTCAAGGCTCTCTATGATATGACTAATGAATTCAGCTGCAAGGTCTATCAGAAGCATGGATGGAACCCCTTACGATCTTTGAAAATTTCGTGGGCGAGTCTTTGCAATGCGTTTTTGGTGGAAGCAAAATGGTTCGCATCTGGGCAGCTGCCGAAGTCAGAAGAGTACTTGAAGAACGGCATCGTTTCTTCTGGGGTAAATGTGGGTCTAGTCCACATGTTTTTTCTCTTGGGTCAGAACATAACCAGAAAGAGTGTGGAGTTGTTGAATGAAACTCCAGCCATGATATCGTCCTCAGCAGCAATTCTTCGACTCTGGGACGATTTAGGCAGTGCAAAGGATGAGAACCAGGATGGGAACGATGGGTCGTATGTAAGGTGCTACTTAGAGGAACATGAAGGCTGTTCCATTGAGGAGGCACGAGAAAAGACGATTAATATGATTTCAGATGAATGGAAGAAACTGAACAGAGAACTGCTCTCTCCAAATCCATTTCCAGCAACATTCACATCGGCTTCTCTTAATCTCGCAAGAATGATCCCCTTGATGTATAGCTACGATGGCAACCAATCCCTTCCATCTCTTAAAGAGTATATGAAACTGATGTTGTATGAGACTGTATCAATGTAA

Protein Analysis

400

Amino Acids

45.8

Weight (kDa)

5.82

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 1 - 35 2.9e-06 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 104 - 344 1.2e-80 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 146 - 344 1.4e-52 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 94
AccB7I CCANNNNNTGG 2 cut(s) 216, 306
AclWI GGATC 2 cut(s) 389, 1102
AcoI YGGCCR 2 cut(s) 73, 177
AcsI RAATTY 4 cut(s) 223, 294, 599, 654
AcuI CTGAAG 1 cut(s) 356
AfaI GTAC 3 cut(s) 31, 368, 737
AfiI CCNNNNNNNGG 2 cut(s) 216, 306
AflIII ACRYGT 1 cut(s) 786
AgsI TTSAA 7 cut(s) 56, 256, 293, 574, 652, 742, 838
AjnI CCWGG 2 cut(s) 179, 918
Alw21I GWGCWC 2 cut(s) 276, 426
Alw26I GTCTC 1 cut(s) 1178
Alw44I GTGCAC 1 cut(s) 272
AlwI GGATC 2 cut(s) 389, 1102
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 4 cut(s) 73, 165, 177, 385
ApaLI GTGCAC 1 cut(s) 272
ApeKI GCWGC 5 cut(s) 22, 606, 715, 718, 869
ApoI RAATTY 4 cut(s) 223, 294, 599, 654
AseI ATTAAT 1 cut(s) 1005
Asp700I GAANNNNTTC 2 cut(s) 188, 288
AspS9I GGNCC 2 cut(s) 262, 375
AvaII GGWCC 2 cut(s) 262, 375
BaeGI GKGCMC 1 cut(s) 276
BaeI ACNNNNGTAYC 2 cut(s) 36, 69
BalI TGGCCA 2 cut(s) 75, 179
BanII GRGCYC 1 cut(s) 426
BauI CACGAG 1 cut(s) 990
Bbv12I GWGCWC 2 cut(s) 276, 426
BbvCI CCTCAGC 1 cut(s) 865
BbvI GCAGC 5 cut(s) 34, 593, 705, 727, 881
BccI CCATC 8 cut(s) 84, 443, 516, 624, 917, 926, 1124, 1156
BceAI ACGGC 1 cut(s) 763
BciT130I CCWGG 2 cut(s) 181, 920
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 1178
BfaI CTAG 2 cut(s) 26, 779
BfmI CTRYAG 1 cut(s) 537
BisI GCNGC 5 cut(s) 23, 607, 716, 719, 870
BlsI GCNGC 5 cut(s) 24, 608, 717, 720, 871
BmcAI AGTACT 1 cut(s) 737
Bme1390I CCNGG 2 cut(s) 181, 920
Bme18I GGWCC 2 cut(s) 262, 375
BmgT120I GGNCC 2 cut(s) 262, 375
BmiI GGNNCC 2 cut(s) 481, 635
BmrFI CCNGG 2 cut(s) 181, 920
BmsI GCATC 2 cut(s) 716, 759
BplI GAGNNNNNCTC 4 cut(s) 133, 165, 1032, 1064
BpmI CTGGAG 1 cut(s) 831
Bpu10I CCTNAGC 1 cut(s) 865
BpuEI CTTGAG 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 378
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 306
Bse3DI GCAATG 1 cut(s) 682
Bse8I GATNNNNATC 1 cut(s) 111
BseBI CCWGG 2 cut(s) 181, 920
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 3 cut(s) 635, 916, 928
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 216, 306
BseMI GCAATG 1 cut(s) 682
BseMII CTCAG 1 cut(s) 879
BseRI GAGGAG 2 cut(s) 425, 998
BseSI GKGCMC 1 cut(s) 276
BseXI GCAGC 5 cut(s) 34, 593, 705, 727, 881
BshFI GGCC 4 cut(s) 75, 167, 179, 387
BsiHKAI GWGCWC 2 cut(s) 276, 426
BsiSI CCGG 1 cut(s) 265
BslFI GGGAC 1 cut(s) 902
BslI CCNNNNNNNGG 2 cut(s) 216, 306
BsmAI GTCTC 1 cut(s) 1178
BsmFI GGGAC 1 cut(s) 902
BsnI GGCC 4 cut(s) 75, 167, 179, 387
Bsp1286I GDGCHC 2 cut(s) 276, 426
Bsp143I GATC 5 cut(s) 106, 349, 394, 644, 1107
Bsp19I CCATGG 1 cut(s) 378
BspANI GGCC 4 cut(s) 75, 167, 179, 387
BspCNI CTCAG 1 cut(s) 878
BspLI GGNNCC 2 cut(s) 481, 635
BspPI GGATC 2 cut(s) 389, 1102
BsrDI GCAATG 1 cut(s) 682
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 5 cut(s) 106, 349, 394, 644, 1107
BssSI CACGAG 1 cut(s) 990
BssT1I CCWWGG 1 cut(s) 378
Bst2BI CACGAG 1 cut(s) 990
Bst2UI CCWGG 2 cut(s) 181, 920
Bst4CI ACNGT 1 cut(s) 1189
Bst6I CTCTTC 2 cut(s) 506, 726
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 2 cut(s) 865, 955
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 3 cut(s) 635, 916, 928
BstKTI GATC 5 cut(s) 109, 352, 397, 647, 1110
BstMAI GTCTC 1 cut(s) 1178
BstMBI GATC 5 cut(s) 106, 349, 394, 644, 1107
BstMWI GCNNNNNNNGC 1 cut(s) 1131
BstNI CCWGG 2 cut(s) 181, 920
BstNSI RCATGY 1 cut(s) 790
BstSCI CCNGG 2 cut(s) 179, 918
BstSFI CTRYAG 1 cut(s) 537
BstSLI GKGCMC 1 cut(s) 276
BstV1I GCAGC 5 cut(s) 34, 593, 705, 727, 881
BstX2I RGATCY 1 cut(s) 394
BstXI CCANNNNNNTGG 1 cut(s) 363
BstYI RGATCY 1 cut(s) 394
BsuRI GGCC 4 cut(s) 75, 167, 179, 387
BtgI CCRYGG 1 cut(s) 378
BtsCI GGATG 3 cut(s) 635, 916, 928
BtsI GCAGTG 1 cut(s) 907
BtsIMutI CAGTG 2 cut(s) 356, 907
Cac8I GCNNGC 1 cut(s) 385
CaiI CAGNNNCTG 1 cut(s) 512
Cfr13I GGNCC 2 cut(s) 262, 375
Csp6I GTAC 3 cut(s) 30, 367, 736
CviAII CATG 7 cut(s) 175, 216, 379, 626, 787, 853, 965
CviQI GTAC 3 cut(s) 30, 367, 736
DdeI CTNAG 2 cut(s) 865, 955
DpnI GATC 5 cut(s) 108, 351, 396, 646, 1109
DpnII GATC 5 cut(s) 106, 349, 394, 644, 1107
DrdI GACNNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 94
EaeI YGGCCR 2 cut(s) 73, 177
Eam1104I CTCTTC 2 cut(s) 506, 726
EarI CTCTTC 2 cut(s) 506, 726
Ecl136II GAGCTC 1 cut(s) 424
Eco130I CCWWGG 1 cut(s) 378
Eco147I AGGCCT 1 cut(s) 387
Eco24I GRGCYC 1 cut(s) 426
Eco32I GATATC 1 cut(s) 858
Eco47I GGWCC 2 cut(s) 262, 375
Eco53kI GAGCTC 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 424
EcoRI GAATTC 1 cut(s) 599
EcoRII CCWGG 2 cut(s) 179, 918
EcoRV GATATC 1 cut(s) 858
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 7 cut(s) 178, 219, 382, 629, 790, 856, 968
FalI AAGNNNNNCTT 4 cut(s) 33, 65, 554, 586
FaqI GGGAC 1 cut(s) 902
FatI CATG 7 cut(s) 174, 215, 378, 625, 786, 852, 964
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 5 cut(s) 23, 607, 716, 719, 870
FokI GGATG 3 cut(s) 642, 923, 935
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 5 cut(s) 23, 607, 716, 719, 870
FspBI CTAG 2 cut(s) 26, 779
GluI GCNGC 5 cut(s) 23, 607, 716, 719, 870
GsuI CTGGAG 1 cut(s) 831
HaeIII GGCC 4 cut(s) 75, 167, 179, 387
HapII CCGG 1 cut(s) 265
Hin1II CATG 7 cut(s) 178, 219, 382, 629, 790, 856, 968
HindIII AAGCTT 2 cut(s) 15, 160
HinfI GANTC 3 cut(s) 145, 667, 882
HpaII CCGG 1 cut(s) 265
Hpy166II GTNNAC 3 cut(s) 274, 369, 784
Hpy188I TCNGA 5 cut(s) 409, 621, 730, 807, 1018
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 3 cut(s) 274, 369, 784
HpyAV CCTTC 4 cut(s) 29, 304, 962, 1154
HpyCH4III ACNGT 1 cut(s) 1189
HpyCH4V TGCA 5 cut(s) 274, 344, 609, 675, 905
HpyF10VI GCNNNNNNNGC 1 cut(s) 1131
HpyF3I CTNAG 2 cut(s) 865, 955
Hsp92II CATG 7 cut(s) 178, 219, 382, 629, 790, 856, 968
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 5 cut(s) 106, 349, 394, 644, 1107
LmnI GCTCC 1 cut(s) 313
Lsp1109I GCAGC 5 cut(s) 34, 593, 705, 727, 881
LweI GCATC 2 cut(s) 716, 759
MaeI CTAG 2 cut(s) 26, 779
MaeIII GTNAC 2 cut(s) 96, 193
MalI GATC 5 cut(s) 108, 351, 396, 646, 1109
MboI GATC 5 cut(s) 106, 349, 394, 644, 1107
MboII GAAGA 8 cut(s) 53, 493, 574, 743, 750, 754, 869, 1039
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 2 cut(s) 276, 426
MlsI TGGCCA 2 cut(s) 75, 179
MluCI AATT 8 cut(s) 123, 211, 223, 294, 528, 599, 654, 873
MluNI TGGCCA 2 cut(s) 75, 179
MlyI GAGTC 2 cut(s) 676, 876
MmeI TCCRAC 1 cut(s) 109
Mox20I TGGCCA 2 cut(s) 75, 179
MroXI GAANNNNTTC 2 cut(s) 188, 288
MscI TGGCCA 2 cut(s) 75, 179
MseI TTAA 6 cut(s) 221, 327, 516, 1005, 1092, 1155
MslI CAYNNNNRTG 1 cut(s) 361
Msp20I TGGCCA 2 cut(s) 75, 179
MspA1I CMGCKG 2 cut(s) 606, 718
MspI CCGG 1 cut(s) 265
MspR9I CCNGG 2 cut(s) 181, 920
MvaI CCWGG 2 cut(s) 181, 920
MwoI GCNNNNNNNGC 1 cut(s) 1131
NcoI CCATGG 1 cut(s) 378
NdeII GATC 5 cut(s) 106, 349, 394, 644, 1107
NlaIII CATG 7 cut(s) 178, 219, 382, 629, 790, 856, 968
NlaIV GGNNCC 2 cut(s) 481, 635
NmuCI GTSAC 1 cut(s) 96
NspI RCATGY 1 cut(s) 790
PceI AGGCCT 1 cut(s) 387
PciI ACATGT 1 cut(s) 786
PdmI GAANNNNTTC 2 cut(s) 188, 288
PfeI GAWTC 1 cut(s) 145
PflMI CCANNNNNTGG 2 cut(s) 216, 306
PkrI GCNGC 5 cut(s) 24, 608, 717, 720, 871
PleI GAGTC 2 cut(s) 675, 876
PpsI GAGTC 2 cut(s) 675, 876
PscI ACATGT 1 cut(s) 786
PshBI ATTAAT 1 cut(s) 1005
Psp124BI GAGCTC 1 cut(s) 426
Psp6I CCWGG 2 cut(s) 179, 918
PspGI CCWGG 2 cut(s) 179, 918
PspN4I GGNNCC 2 cut(s) 481, 635
PspPI GGNCC 2 cut(s) 262, 375
PstNI CAGNNNCTG 1 cut(s) 512
PsuI RGATCY 1 cut(s) 394
PvuII CAGCTG 2 cut(s) 606, 718
RsaI GTAC 3 cut(s) 31, 368, 737
RsaNI GTAC 3 cut(s) 30, 367, 736
RseI CAYNNNNRTG 1 cut(s) 361
SacI GAGCTC 1 cut(s) 426
SaqAI TTAA 6 cut(s) 221, 327, 516, 1005, 1092, 1155
SatI GCNGC 5 cut(s) 23, 607, 716, 719, 870
Sau3AI GATC 5 cut(s) 106, 349, 394, 644, 1107
Sau96I GGNCC 2 cut(s) 262, 375
ScaI AGTACT 1 cut(s) 737
SchI GAGTC 2 cut(s) 676, 876
ScrFI CCNGG 2 cut(s) 181, 920
SduI GDGCHC 2 cut(s) 276, 426
SfaNI GCATC 2 cut(s) 716, 759
SfcI CTRYAG 1 cut(s) 537
SinI GGWCC 2 cut(s) 262, 375
SmiMI CAYNNNNRTG 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 8 cut(s) 123, 211, 223, 294, 528, 599, 654, 873
SseBI AGGCCT 1 cut(s) 387
SspMI CTAG 2 cut(s) 26, 779
SstI GAGCTC 1 cut(s) 426
StuI AGGCCT 1 cut(s) 387
StyD4I CCNGG 2 cut(s) 179, 918
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 1 cut(s) 1189
TaqI TCGA 3 cut(s) 115, 468, 880
TasI AATT 8 cut(s) 123, 211, 223, 294, 528, 599, 654, 873
TatI WGTACW 1 cut(s) 735
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 6 cut(s) 221, 327, 516, 1005, 1092, 1155
Tru9I TTAA 6 cut(s) 221, 327, 516, 1005, 1092, 1155
TscAI CASTG 2 cut(s) 363, 907
TseFI GTSAC 1 cut(s) 96
TseI GCWGC 5 cut(s) 22, 606, 715, 718, 869
Tsp45I GTSAC 1 cut(s) 96
TspDTI ATGAA 8 cut(s) 163, 204, 575, 612, 855, 981, 1035, 1181
TspRI CASTG 2 cut(s) 363, 907
Van91I CCANNNNNTGG 2 cut(s) 216, 306
VneI GTGCAC 1 cut(s) 272
VpaK11BI GGWCC 2 cut(s) 262, 375
VspI ATTAAT 1 cut(s) 1005
XapI RAATTY 4 cut(s) 223, 294, 599, 654
XceI RCATGY 1 cut(s) 790
XcmI CCANNNNNNNNNTGG 1 cut(s) 823
XmnI GAANNNNTTC 2 cut(s) 188, 288
XspI CTAG 2 cut(s) 26, 779
ZrmI AGTACT 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.