Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000720

Physical Location & Seq

Genomic Coordinates Forward (+)

3103231 .. 3104525

Gene Structure 1295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG041700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCCAGGAAGTTTTTTGTTACTTCTCAAGGCACCAATACATGGTTGAATTTGCTAAAAGAAGTAGCAAAAACATATTTCAGTATGGTCCAGTCCCTGCACCAGAATGAAATAGTTCAAATCTCCAAATGGTGGAAGGAGCTAGGATTGGCTAAGGAACTGAAGTTTGCAAGAGACCAACCACTGAAATGGTACATTTGGGCCATGGCATGCCTAACAGATCCAAAGTTATCAGAGGAGAGGGTTGAGCTCACAAAACCCATCTCATTTGTCTATTTGATAGATGACATTTTTGATGTTAATGGAACCCTTGATGAACTCATTCTCTTCACAGAAGCTATTAATAGATGGGATATTACTGCTATAGACCACTTACCAGACTACATGAAGATATGCTTCAAGGCTCTCGATGATATAACCAACGAAATAAGCTACAAGGTCTATAAGAGGCATGGATGGAACCCCTTGCAATATTTGAAAAAGATGTGGGCGAGTCTTTGCAATGCATTTTTGGTGGAAGCAAAATGGTTCGCATCTGGGAAGCTGCCGAAGTCAGAAGAGTACCTGAAGAATGGCATTGTTTCTTCTGGGGTAAATGTGGTTGTAGTCCACTTTCTTTTTCTCTTGGGTCAAAACATAACCAAACAGAATGTGGAGTTGTTGAATGACACTCCAGCTATTATATCGTCCACAGCAACAATTCTACGACTTTGGGACGACTTGGGAAGTGCAACAGATGAGAACCAGGATGGGAACGATGGGTCGTATGTAAGGTGCTACTTAGAGGAACATCAAGGTTGTTCCATTGAGGAGGCACGAGAAAAGACTGTTAATATGATTTCAGATGAATGGAAGAAACTGAACAGAGAATTGCTCTCTCCTAATCCATTTCCAGCAACATTCACTTCGGCTTCCCTTAATCTCGCAAGAATGGTCCCCCTGATGTATAACTATGATGGCAACCAATGCCTTCCATCTCTTAAAGAGTATATGAAATCAATGTTGTATGAGACTGTATCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

341

Amino Acids

39.37

Weight (kDa)

5.42

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	46 - 286	3.9e-86	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	88 - 286	2.1e-54	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61680 AT1G61680
fragaria_vesca	FvH4_3g03042 FvH4_3g03042 FvH4_3g03045 FvH4_3g03061 FvH4_3g03072 FvH4_3g03072 FvH4_3g03081 FvH4_3g03150 FvH4_3g03150
malus_domestica	MD05G1334800.v1.1 MD05G1335000.v1.1 MD05G1335100.v1.1 MD10G1309700.v1.1 MD10G1309800.v1.1 MD10G1309900.v1.1 MD10G1310200.v1.1 MD10G1310300.v1.1 MD10G1310500.v1.1 MD10G1310600.v1.1
prunus_persica	Prupe.4G030300_v2.0.a1 Prupe.4G030400_v2.0.a1
pyrus_communis	pycom05g30640 pycom10g26110 pycom10g26140 pycom10g26150 pycom10g26160
rosa_chinensis	RchiOBHm_Chr5g0004711 RchiOBHm_Chr5g0004731 RchiOBHm_Chr5g0004761 RchiOBHm_Chr5g0004801
rosa_laevigata	RLG00000030230 RLG00000031254 RLG00000031255 RLG00000031257 RLG00000031260
rosa_multiflora	Rmu_co8094102.1_g000001 Rmu_sc0002210.1_g000005 Rmu_sc0002210.1_g000008 Rmu_sc0002210.1_g000009 Rmu_sc0008308.1_g000013 Rmu_sc0010871.1_g000028 Rmu_sc0030338.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070820 Rroxscaffold_1G00070840 Rroxscaffold_1G00070850
rosa_rugosa	Rorug04G0413500 Rorug04G0413500 Rorug04G0413700 Rorug04G0413800 Rorug04G0413900 Rorug05G0165300
rosa_samantha	Rh5AG041200 Rh5AG041300 Rh5BG040900 Rh5BG041000 Rh5BG041100 Rh5BG041300 Rh5CG044700 Rh5CG044800 Rh5CG045200 Rh5DG040900 Rh5DG041000 Rh5DG041200 Rh5DG041700 Rh5DG265100
rosa_wichuraiana	Rw5G003960 Rw5G003980 Rw5G003990 Rw5G004000 Rw5G004010 Rw5G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccB7I	CCANNNNNTGG	2 cut(s)	42, 132
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	2 cut(s)	182, 587
AfaI	GTAC	2 cut(s)	194, 563
AfiI	CCNNNNNNNGG	2 cut(s)	42, 132
AgsI	TTSAA	5 cut(s)	49, 119, 400, 478, 664
AjnI	CCWGG	2 cut(s)	5, 744
AluBI	AGCT	6 cut(s)	142, 250, 338, 432, 544, 677
AluI	AGCT	6 cut(s)	142, 250, 338, 432, 544, 677
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	2 cut(s)	168, 1004
AlwI	GGATC	1 cut(s)	215
AlwNI	CAGNNNCTG	1 cut(s)	97
AoxI	GGCC	2 cut(s)	3, 201
ApeKI	GCWGC	1 cut(s)	544
ApoI	RAATTY	1 cut(s)	49
AseI	ATTAAT	1 cut(s)	342
Asp700I	GAANNNNTTC	2 cut(s)	114, 321
AspS9I	GGNCC	3 cut(s)	88, 201, 934
AvaII	GGWCC	2 cut(s)	88, 934
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	252
BauI	CACGAG	1 cut(s)	816
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	531
BccI	CCATC	7 cut(s)	269, 342, 450, 743, 752, 950, 982
BciT130I	CCWGG	2 cut(s)	7, 746
BcoDI	GTCTC	2 cut(s)	168, 1004
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	363
BisI	GCNGC	1 cut(s)	545
BlsI	GCNGC	1 cut(s)	546
Bme1390I	CCNGG	2 cut(s)	7, 746
Bme18I	GGWCC	2 cut(s)	88, 934
BmgT120I	GGNCC	3 cut(s)	88, 201, 934
BmiI	GGNNCC	4 cut(s)	34, 307, 461, 936
BmrFI	CCNGG	2 cut(s)	7, 746
BmsI	GCATC	1 cut(s)	542
BplI	GAGNNNNNCTC	2 cut(s)	858, 890
BpmI	CTGGAG	1 cut(s)	657
Bpu10I	CCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 132
Bse1I	ACTGG	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	508
BseBI	CCWGG	2 cut(s)	7, 746
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	461, 754
BseLI	CCNNNNNNNGG	2 cut(s)	42, 132
BseMI	GCAATG	1 cut(s)	508
BseNI	ACTGG	1 cut(s)	91
BseRI	GAGGAG	2 cut(s)	251, 824
BseXI	GCAGC	1 cut(s)	531
BsgI	GTGCAG	1 cut(s)	83
BshFI	GGCC	2 cut(s)	5, 203
BshNI	GGYRCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	252
BslFI	GGGAC	3 cut(s)	79, 728, 920
BslI	CCNNNNNNNGG	2 cut(s)	42, 132
BsmAI	GTCTC	2 cut(s)	168, 1004
BsmFI	GGGAC	3 cut(s)	79, 728, 920
BsnI	GGCC	2 cut(s)	5, 203
Bso31I	GGTCTC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	220
Bsp19I	CCATGG	1 cut(s)	204
BspANI	GGCC	2 cut(s)	5, 203
BspLI	GGNNCC	4 cut(s)	34, 307, 461, 936
BspPI	GGATC	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	32
BspTNI	GGTCTC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	220
BssSI	CACGAG	1 cut(s)	816
BssT1I	CCWWGG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	816
Bst2UI	CCWGG	2 cut(s)	7, 746
Bst4CI	ACNGT	2 cut(s)	829, 1015
Bst6I	CTCTTC	2 cut(s)	332, 552
BstAPI	GCANNNNNTGC	1 cut(s)	966
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	2 cut(s)	153, 781
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	461, 754
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	2 cut(s)	168, 1004
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	966
BstNI	CCWGG	2 cut(s)	7, 746
BstNSI	RCATGY	1 cut(s)	213
BstSCI	CCNGG	2 cut(s)	5, 744
BstSFI	CTRYAG	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	531
BstX2I	RGATCY	1 cut(s)	220
BstXI	CCANNNNNNTGG	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	5, 203
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	461, 754
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	211
CaiI	CAGNNNCTG	1 cut(s)	97
Cfr13I	GGNCC	3 cut(s)	88, 201, 934
Csp6I	GTAC	2 cut(s)	193, 562
CviAII	CATG	5 cut(s)	42, 205, 210, 385, 452
CviQI	GTAC	2 cut(s)	193, 562
DdeI	CTNAG	2 cut(s)	153, 781
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	332, 552
EarI	CTCTTC	2 cut(s)	332, 552
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	168
Eco47I	GGWCC	2 cut(s)	88, 934
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	2 cut(s)	182, 587
EcoICRI	GAGCTC	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	5, 744
EcoT14I	CCWWGG	1 cut(s)	204
EcoT22I	ATGCAT	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	5 cut(s)	45, 208, 213, 388, 455
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FaqI	GGGAC	3 cut(s)	79, 728, 920
FatI	CATG	5 cut(s)	41, 204, 209, 384, 451
Fnu4HI	GCNGC	1 cut(s)	545
FokI	GGATG	2 cut(s)	468, 761
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	545
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	1 cut(s)	545
GsuI	CTGGAG	1 cut(s)	657
HaeIII	GGCC	2 cut(s)	5, 203
Hin1II	CATG	5 cut(s)	45, 208, 213, 388, 455
HinfI	GANTC	1 cut(s)	493
Hpy166II	GTNNAC	2 cut(s)	610, 690
Hpy188I	TCNGA	3 cut(s)	235, 556, 844
Hpy188III	TCNNGA	1 cut(s)	407
Hpy8I	GTNNAC	2 cut(s)	610, 690
HpyAV	CCTTC	2 cut(s)	130, 980
HpyCH4III	ACNGT	2 cut(s)	829, 1015
HpyCH4V	TGCA	6 cut(s)	100, 170, 469, 501, 506, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	966
HpyF3I	CTNAG	2 cut(s)	153, 781
Hsp92II	CATG	5 cut(s)	45, 208, 213, 388, 455
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	1 cut(s)	531
LweI	GCATC	1 cut(s)	542
MaeI	CTAG	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	6 cut(s)	319, 400, 569, 576, 580, 865
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	252
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	49, 699, 869
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	502
MnlI	CCTC	6 cut(s)	229, 234, 441, 778, 802, 805
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	508
MroXI	GAANNNNTTC	2 cut(s)	114, 321
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	300, 342, 831, 918, 981
MslI	CAYNNNNRTG	2 cut(s)	105, 187
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	7, 746
MvaI	CCWGG	2 cut(s)	7, 746
MwoI	GCNNNNNNNGC	1 cut(s)	966
NcoI	CCATGG	1 cut(s)	204
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	5 cut(s)	45, 208, 213, 388, 455
NlaIV	GGNNCC	4 cut(s)	34, 307, 461, 936
NsiI	ATGCAT	1 cut(s)	508
NspI	RCATGY	1 cut(s)	213
PaeI	GCATGC	1 cut(s)	213
PdmI	GAANNNNTTC	2 cut(s)	114, 321
PflMI	CCANNNNNTGG	2 cut(s)	42, 132
PkrI	GCNGC	1 cut(s)	546
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
PshBI	ATTAAT	1 cut(s)	342
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	5, 744
PspGI	CCWGG	2 cut(s)	5, 744
PspN4I	GGNNCC	4 cut(s)	34, 307, 461, 936
PspPI	GGNCC	3 cut(s)	88, 201, 934
PstNI	CAGNNNCTG	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	2 cut(s)	194, 563
RsaNI	GTAC	2 cut(s)	193, 562
RseI	CAYNNNNRTG	2 cut(s)	105, 187
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	5 cut(s)	300, 342, 831, 918, 981
SatI	GCNGC	1 cut(s)	545
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	3 cut(s)	88, 201, 934
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	2 cut(s)	7, 746
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	1 cut(s)	542
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	2 cut(s)	88, 934
SmiMI	CAYNNNNRTG	2 cut(s)	105, 187
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
SphI	GCATGC	1 cut(s)	213
Sse9I	AATT	3 cut(s)	49, 699, 869
SspI	AATATT	1 cut(s)	473
SspMI	CTAG	1 cut(s)	143
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	5, 744
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	829, 1015
TaqI	TCGA	1 cut(s)	408
TasI	AATT	3 cut(s)	49, 699, 869
Tru1I	TTAA	5 cut(s)	300, 342, 831, 918, 981
Tru9I	TTAA	5 cut(s)	300, 342, 831, 918, 981
TscAI	CASTG	1 cut(s)	189
TseI	GCWGC	1 cut(s)	544
TspDTI	ATGAA	5 cut(s)	123, 330, 401, 861, 1007
TspRI	CASTG	1 cut(s)	189
Van91I	CCANNNNNTGG	2 cut(s)	42, 132
VpaK11BI	GGWCC	2 cut(s)	88, 934
VspI	ATTAAT	1 cut(s)	342
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	1 cut(s)	213
XcmI	CCANNNNNNNNNTGG	1 cut(s)	649
XmnI	GAANNNNTTC	2 cut(s)	114, 321
XspI	CTAG	1 cut(s)	143
Zsp2I	ATGCAT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.