Rmu_co8094102.1_g000001

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8094102.1
Physical Location & Seq
Forward (+)
74 .. 561
488 bp
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UTR
Exon/CDS
Intron
Rmu_co8094102.1_g000001.1.cds

Sequence Viewer

Length: 303 bp
atgaagatatgcttcaaggctctcgatgatataaccaacgaaatcagctacaaggtctataagaggcatggatggaaccccttgcaatatttgaaaaagatgtgggcgagtctttgcaatgcatttttggtggaagcaaaatggttcgcatctgggaagctgccgaagtcagaagagtacctgaagaatggcattgtttcttctgggctattatatcgtccacagcaacaattcttcgactttgggacgacttgggaagtgcaaaggatgagaaccaggatgggaacgatgggtcgtatgtaa

Protein Analysis

100

Amino Acids

11.84

Weight (kDa)

9.74

Isoelectric Point (pI)

21.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 1 cut(s) 179
AgsI TTSAA 2 cut(s) 16, 94
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 2 cut(s) 48, 160
AluI AGCT 2 cut(s) 48, 160
ApeKI GCWGC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 147
BccI CCATC 3 cut(s) 66, 274, 283
BciT130I CCWGG 1 cut(s) 277
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 1 cut(s) 277
BmiI GGNNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 158
Bse3DI GCAATG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 277
BseGI GGATG 3 cut(s) 77, 273, 285
BseMI GCAATG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 147
BslFI GGGAC 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 168
BstF5I GGATG 3 cut(s) 77, 273, 285
BstNI CCWGG 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 147
BtsCI GGATG 3 cut(s) 77, 273, 285
Csp6I GTAC 1 cut(s) 178
CviAII CATG 1 cut(s) 68
CviJI RGCY 4 cut(s) 20, 48, 160, 208
CviKI_1 RGCY 4 cut(s) 20, 48, 160, 208
CviQI GTAC 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 275
EcoT22I ATGCAT 1 cut(s) 124
FaeI CATG 1 cut(s) 71
FaiI YATR 6 cut(s) 10, 32, 60, 69, 214, 299
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 1 cut(s) 259
FatI CATG 1 cut(s) 67
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 3 cut(s) 84, 280, 292
Fsp4HI GCNGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 161
Hin1II CATG 1 cut(s) 71
HinfI GANTC 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 1 cut(s) 221
HpyCH4V TGCA 4 cut(s) 85, 117, 122, 262
Hsp92II CATG 1 cut(s) 71
LpnPI CCDG 5 cut(s) 138, 189, 194, 262, 289
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 1 cut(s) 158
MboII GAAGA 5 cut(s) 16, 185, 192, 196, 226
MluCI AATT 1 cut(s) 230
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 1 cut(s) 57
Mph1103I ATGCAT 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 277
MvaI CCWGG 1 cut(s) 277
NlaIII CATG 1 cut(s) 71
NlaIV GGNNCC 1 cut(s) 77
NsiI ATGCAT 1 cut(s) 124
PkrI GCNGC 1 cut(s) 162
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 77
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SatI GCNGC 1 cut(s) 161
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 277
SetI ASST 4 cut(s) 50, 57, 162, 183
SfaNI GCATC 1 cut(s) 158
Sse9I AATT 1 cut(s) 230
SspI AATATT 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 275
TaqI TCGA 2 cut(s) 24, 237
TasI AATT 1 cut(s) 230
TseI GCWGC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.