pycom10g26140

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
27532203 .. 27532650
448 bp
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UTR
Exon/CDS
Intron
pycom10g26140.1

Sequence Viewer

Length: 354 bp
ATGTCCTGTACTTTCTTAATTGGCTTCACCAGTTTTCACTGTGAATTGATCAGTAAATATTATAGAGCACTTAAACCGGACTACATGAACATATATTTAATGGCTCTTTACAATATGACGAATGAAATCAGCTGCAAATTCTATCAAAAGCATGGGTGGTACCCATTACGTTCGTTTAAGTGGGGGATTCTGTGCAATGCATTTTTATCAGAAGCAAAGCGGTTCAAATGCGGGCACTTGCCGAAGGCGGAAGACTACTTAAAGAATGGTATTGTTTCTTCTGGGGTTTGTGTGATGATGGTGCATAGATTCTTTCTCTTGGGTCAAGGTACAACGAAAGTGTGGAGCCATTGA

Protein Analysis

118

Amino Acids

13.7

Weight (kDa)

9.3

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 25 - 113 4.5e-18 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 25 - 113 6.8e-13 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 159
AccB1I GGYRCC 1 cut(s) 159
AciI CCGC 3 cut(s) 220, 231, 248
AcsI RAATTY 1 cut(s) 137
AfaI GTAC 3 cut(s) 10, 161, 331
AgsI TTSAA 1 cut(s) 226
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
Alw21I GWGCWC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 1 cut(s) 137
Asp718I GGTACC 1 cut(s) 159
AsuHPI GGTGA 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 159
BarI GAAGNNNNNNTAC 2 cut(s) 262, 294
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 119
BccI CCATC 1 cut(s) 292
BclI TGATCA 1 cut(s) 48
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
BmiI GGNNCC 2 cut(s) 161, 347
BpiI GAAGAC 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 30
Bse3DI GCAATG 1 cut(s) 202
BseMI GCAATG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 1 cut(s) 119
BshNI GGYRCC 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 70, 237
Bsp143I GATC 1 cut(s) 48
BspACI CCGC 3 cut(s) 220, 231, 248
BspLI GGNNCC 2 cut(s) 161, 347
BspT107I GGYRCC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 202
BsrI ACTGG 1 cut(s) 30
BssMI GATC 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 233
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 233
Csp6I GTAC 3 cut(s) 9, 160, 330
CviAII CATG 2 cut(s) 85, 152
CviJI RGCY 4 cut(s) 24, 104, 132, 348
CviKI_1 RGCY 4 cut(s) 24, 104, 132, 348
CviQI GTAC 3 cut(s) 9, 160, 330
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 263
EcoT22I ATGCAT 1 cut(s) 202
FaeI CATG 2 cut(s) 88, 155
FaiI YATR 7 cut(s) 63, 86, 92, 94, 116, 153, 306
FatI CATG 2 cut(s) 84, 151
FauI CCCGC 1 cut(s) 224
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 133
GluI GCNGC 1 cut(s) 133
HapII CCGG 1 cut(s) 77
Hin1II CATG 2 cut(s) 88, 155
HinfI GANTC 2 cut(s) 187, 309
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 4 cut(s) 135, 195, 200, 304
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 2 cut(s) 88, 155
KpnI GGTACC 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 345
LpnPI CCDG 4 cut(s) 19, 43, 90, 267
Lsp1109I GCAGC 1 cut(s) 119
MaeII ACGT 1 cut(s) 169
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 2 cut(s) 263, 270
MhlI GDGCHC 2 cut(s) 70, 237
MluCI AATT 3 cut(s) 18, 44, 137
Mph1103I ATGCAT 1 cut(s) 202
MseI TTAA 5 cut(s) 17, 72, 98, 177, 260
MspA1I CMGCKG 1 cut(s) 132
MspI CCGG 1 cut(s) 77
NdeII GATC 1 cut(s) 48
NlaIII CATG 2 cut(s) 88, 155
NlaIV GGNNCC 2 cut(s) 161, 347
NsiI ATGCAT 1 cut(s) 202
PfeI GAWTC 2 cut(s) 187, 309
PkrI GCNGC 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 161, 347
PvuII CAGCTG 1 cut(s) 132
RsaI GTAC 3 cut(s) 10, 161, 331
RsaNI GTAC 3 cut(s) 9, 160, 330
SaqAI TTAA 5 cut(s) 17, 72, 98, 177, 260
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 1 cut(s) 48
SduI GDGCHC 2 cut(s) 70, 237
SetI ASST 3 cut(s) 134, 172, 331
Sse9I AATT 3 cut(s) 18, 44, 137
SsiI CCGC 3 cut(s) 220, 231, 248
SspI AATATT 1 cut(s) 59
TaaI ACNGT 1 cut(s) 41
TaiI ACGT 1 cut(s) 172
TasI AATT 3 cut(s) 18, 44, 137
TatI WGTACW 1 cut(s) 8
TfiI GAWTC 2 cut(s) 187, 309
Tru1I TTAA 5 cut(s) 17, 72, 98, 177, 260
Tru9I TTAA 5 cut(s) 17, 72, 98, 177, 260
TscAI CASTG 1 cut(s) 44
TseI GCWGC 1 cut(s) 132
TspDTI ATGAA 2 cut(s) 101, 138
TspRI CASTG 1 cut(s) 44
XapI RAATTY 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.