RLG00000030230

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
58063374 .. 58065290
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030230

Sequence Viewer

Length: 1533 bp
ATGCAGGATGACATTTTTGTCCAACATTCTCAGAAGTTGGAGTTCTTCAGGCATGTATTGAGAAATGTAGCAGAGCTAGATGCCCTTGAAGGTTTGAATATGATCGATGCTATTCAACGGCTAGGCATCGATTATCACTTTCAACAAGAAATCGGTGAAATTCTTCACAAGCAGATGAATATAGTGTCTGCCCATGATGATCTTCATGAGGTTGCACTTCGCTTTCGACTACAGAGACAACAGGGTTACTTTGTGCCTGATGATGTGTTTAACAACTTCAAGGAAAGTAATGGGATGTTCAAGGAAGCTTTGGGTAAAGACATCAAGGGATTGATGAGCTTATATGAAGCTTCATATCTAGGTATAGAAGGAGAAGATACACTTGTTGAAGCTAGAAAATCTAGTATCCATCTGCTAAAGACCTCTTTGTCGCATCTTGATCATCACCAAGCTAGAATTGTGGGCAATACATTGGAGAATCCTCATCATAAAAGCTTGGCCTCATTCATGGCCAGGAACTTTTTTGTTACTTCTCAAGGCACCAATACATGGTTAAATTTGCTAAAAGAAGTAGCAAAAATAGATTTCAGTATGGTACAGTCTCTGTACCAGAATGAAATTGTTCAAATCTCCAAATGGTGGAAGGAGCTAGGATTGGCTAAGGAACTGATGTTTGCAAGAGACCAACCACTAAAATGGTACATTTGGTCTATGGCATGCCTAACAGATCCAAAGTTATCAGAGGAGAGGGTTGAGCTCACAAAACCCATCTCATTTATCTATTTGATAGATGACATTTTTGATGTTTATGGAACCCTTCATGAACTCATTCTCTTCACAGAAGCTGTTAATAGATGGGATATTGCTGCTATAGACCATTTACCAGACTACATGAAGATATGCTTCAAGGCTCTCTATGATATGACTAATGAAATCAGCTGCAAGGTCTATAAGAAGCATGGATGGAACCCTTTGCAATCTTTGAAAAAGACGTGGTCGAGTCTTTGCAATGCATTTTTGGTGGAAGCAAAATGGTTCGCATCTGGGCAGCTGCCAAAGTCAGAAGAGTACTTGAAGAATGGCATTGTTTCTTCTGGGGTAAATGTGGTTCTAGTCCACATTTTTTTTCTCTTAGGTCAAAACATAACCAAACAGAGTGTGGAGTTGTTAAATGACACTCCAACTGTTATATCGTCCACAGCAGCAATTCTTCGACTTTGGGACGACTTAGGAAGTGCAAAGGATGAGAACCAAGATGGGAATGATGGTTCGTATGTAAGGTGCTACTTAGAGGAACATCAAGGCTGTTCCATTGACGAGGCGCGAGAAAAGACTATTAATATGATTTCAGACGAATGGAAGAAACTGAACAGAGAATTACTCTCTCCAAATCCATTTCCAGCAACATTCACTTCAGCTTCCCTTAATCTCGCAAGAATGGTCCCCCTGATGTATAGCTATGATGGCAACCAATGCCTTCCATCACTTGACGAGTATATGAAATCAATGTTGTATGAGACTGTGTCAATGTAA

Protein Analysis

511

Amino Acids

58.71

Weight (kDa)

5.43

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 6 - 146 1.1e-40 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 215 - 455 1.6e-84 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 257 - 455 5.1e-54 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 17, 427
AccB1I GGYRCC 1 cut(s) 539
AccB7I CCANNNNNTGG 2 cut(s) 549, 639
AccII CGCG 1 cut(s) 1324
AclWI GGATC 1 cut(s) 722
AcoI YGGCCR 1 cut(s) 510
AcsI RAATTY 2 cut(s) 159, 556
AcuI CTGAAG 2 cut(s) 31, 1398
AfaI GTAC 4 cut(s) 597, 608, 701, 1070
AfiI CCNNNNNNNGG 2 cut(s) 549, 639
AjiI CACGTC 1 cut(s) 993
AjnI CCWGG 1 cut(s) 512
AloI GAACNNNNNNTCC 2 cut(s) 1252, 1284
Alw21I GWGCWC 1 cut(s) 759
Alw26I GTCTC 4 cut(s) 229, 606, 675, 1511
AlwI GGATC 1 cut(s) 722
AlwNI CAGNNNCTG 2 cut(s) 604, 845
AoxI GGCC 2 cut(s) 498, 510
ApeKI GCWGC 5 cut(s) 866, 939, 1048, 1051, 1202
ApoI RAATTY 2 cut(s) 159, 556
AseI ATTAAT 1 cut(s) 1338
Asp700I GAANNNNTTC 3 cut(s) 162, 621, 828
AspLEI GCGC 1 cut(s) 1324
AspS9I GGNCC 1 cut(s) 1441
AsuHPI GGTGA 2 cut(s) 167, 437
AvaII GGWCC 1 cut(s) 1441
BaeI ACNNNNGTAYC 2 cut(s) 369, 402
BalI TGGCCA 1 cut(s) 512
BanI GGYRCC 1 cut(s) 539
BanII GRGCYC 1 cut(s) 759
Bbv12I GWGCWC 1 cut(s) 759
BbvI GCAGC 5 cut(s) 853, 926, 1038, 1060, 1214
BccI CCATC 8 cut(s) 417, 776, 849, 957, 1250, 1259, 1457, 1489
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 514
BciVI GTATCC 1 cut(s) 416
BclI TGATCA 1 cut(s) 439
BcoDI GTCTC 4 cut(s) 229, 606, 675, 1511
BfaI CTAG 8 cut(s) 77, 122, 359, 393, 402, 453, 650, 1112
BfmI CTRYAG 2 cut(s) 230, 870
BfuI GTATCC 1 cut(s) 416
BisI GCNGC 5 cut(s) 867, 940, 1049, 1052, 1203
BlsI GCNGC 5 cut(s) 868, 941, 1050, 1053, 1204
BmcAI AGTACT 1 cut(s) 1070
Bme1390I CCNGG 1 cut(s) 514
Bme18I GGWCC 1 cut(s) 1441
BmgBI CACGTC 1 cut(s) 993
BmgT120I GGNCC 1 cut(s) 1441
BmiI GGNNCC 4 cut(s) 541, 814, 968, 1443
BmrFI CCNGG 1 cut(s) 514
BmsI GCATC 5 cut(s) 70, 97, 135, 442, 1049
BplI GAGNNNNNCTC 2 cut(s) 1365, 1397
Bpu10I CCTNAGC 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 519
Bsa29I ATCGAT 2 cut(s) 105, 129
BsaI GGTCTC 1 cut(s) 675
Bsc4I CCNNNNNNNGG 2 cut(s) 549, 639
Bse3DI GCAATG 1 cut(s) 1015
BseBI CCWGG 1 cut(s) 514
BseCI ATCGAT 2 cut(s) 105, 129
BseGI GGATG 4 cut(s) 13, 300, 968, 1249
BseLI CCNNNNNNNGG 2 cut(s) 549, 639
BseMI GCAATG 1 cut(s) 1015
BseMII CTCAG 1 cut(s) 44
BseRI GAGGAG 1 cut(s) 758
BseXI GCAGC 5 cut(s) 853, 926, 1038, 1060, 1214
Bsh1236I CGCG 1 cut(s) 1324
BshFI GGCC 2 cut(s) 500, 512
BshNI GGYRCC 1 cut(s) 539
BshVI ATCGAT 2 cut(s) 105, 129
BsiHKAI GWGCWC 1 cut(s) 759
BslFI GGGAC 2 cut(s) 1235, 1427
BslI CCNNNNNNNGG 2 cut(s) 549, 639
BsmAI GTCTC 4 cut(s) 229, 606, 675, 1511
BsmFI GGGAC 2 cut(s) 1235, 1427
BsnI GGCC 2 cut(s) 500, 512
Bso31I GGTCTC 1 cut(s) 675
Bsp1286I GDGCHC 1 cut(s) 759
Bsp143I GATC 4 cut(s) 102, 199, 439, 727
BspANI GGCC 2 cut(s) 500, 512
BspCNI CTCAG 1 cut(s) 43
BspDI ATCGAT 2 cut(s) 105, 129
BspFNI CGCG 1 cut(s) 1324
BspHI TCATGA 2 cut(s) 205, 820
BspLI GGNNCC 4 cut(s) 541, 814, 968, 1443
BspPI GGATC 1 cut(s) 722
BspT107I GGYRCC 1 cut(s) 539
BspTNI GGTCTC 1 cut(s) 675
BsrDI GCAATG 1 cut(s) 1015
BssMI GATC 4 cut(s) 102, 199, 439, 727
Bst2UI CCWGG 1 cut(s) 514
Bst4CI ACNGT 3 cut(s) 600, 1186, 1522
Bst6I CTCTTC 2 cut(s) 839, 1059
BstAPI GCANNNNNTGC 1 cut(s) 1473
BstC8I GCNNGC 1 cut(s) 718
BstDEI CTNAG 5 cut(s) 30, 660, 1132, 1228, 1288
BstF5I GGATG 4 cut(s) 13, 300, 968, 1249
BstFNI CGCG 1 cut(s) 1324
BstHHI GCGC 1 cut(s) 1324
BstKTI GATC 4 cut(s) 105, 202, 442, 730
BstMAI GTCTC 4 cut(s) 229, 606, 675, 1511
BstMBI GATC 4 cut(s) 102, 199, 439, 727
BstMWI GCNNNNNNNGC 2 cut(s) 1464, 1473
BstNI CCWGG 1 cut(s) 514
BstNSI RCATGY 2 cut(s) 56, 720
BstSCI CCNGG 1 cut(s) 512
BstSFI CTRYAG 2 cut(s) 230, 870
BstUI CGCG 1 cut(s) 1324
BstV1I GCAGC 5 cut(s) 853, 926, 1038, 1060, 1214
BstX2I RGATCY 1 cut(s) 727
BstXI CCANNNNNNTGG 1 cut(s) 696
BstYI RGATCY 1 cut(s) 727
Bsu15I ATCGAT 2 cut(s) 105, 129
BsuI GTATCC 1 cut(s) 416
BsuRI GGCC 2 cut(s) 500, 512
BsuTUI ATCGAT 2 cut(s) 105, 129
BtrI CACGTC 1 cut(s) 993
BtsCI GGATG 4 cut(s) 13, 300, 968, 1249
Cac8I GCNNGC 1 cut(s) 718
CaiI CAGNNNCTG 2 cut(s) 604, 845
CciI TCATGA 2 cut(s) 205, 820
CfoI GCGC 1 cut(s) 1324
Cfr13I GGNCC 1 cut(s) 1441
ClaI ATCGAT 2 cut(s) 105, 129
Csp6I GTAC 4 cut(s) 596, 607, 700, 1069
CviAII CATG 9 cut(s) 53, 194, 206, 508, 549, 717, 821, 892, 959
CviQI GTAC 4 cut(s) 596, 607, 700, 1069
DdeI CTNAG 5 cut(s) 30, 660, 1132, 1228, 1288
DpnI GATC 4 cut(s) 104, 201, 441, 729
DpnII GATC 4 cut(s) 102, 199, 439, 727
DrdI GACNNNNNNGTC 2 cut(s) 17, 427
DseDI GACNNNNNNGTC 2 cut(s) 17, 427
EaeI YGGCCR 1 cut(s) 510
Eam1104I CTCTTC 2 cut(s) 839, 1059
EarI CTCTTC 2 cut(s) 839, 1059
Ecl136II GAGCTC 1 cut(s) 757
Eco24I GRGCYC 1 cut(s) 759
Eco31I GGTCTC 1 cut(s) 675
Eco47I GGWCC 1 cut(s) 1441
Eco53kI GAGCTC 1 cut(s) 757
Eco57I CTGAAG 2 cut(s) 31, 1398
EcoICRI GAGCTC 1 cut(s) 757
EcoRII CCWGG 1 cut(s) 512
EcoT22I ATGCAT 1 cut(s) 1015
EcoT38I GRGCYC 1 cut(s) 759
FaeI CATG 9 cut(s) 56, 197, 209, 511, 552, 720, 824, 895, 962
FalI AAGNNNNNCTT 4 cut(s) 366, 398, 887, 919
FaqI GGGAC 2 cut(s) 1235, 1427
FatI CATG 9 cut(s) 52, 193, 205, 507, 548, 716, 820, 891, 958
FbaI TGATCA 1 cut(s) 439
Fnu4HI GCNGC 5 cut(s) 867, 940, 1049, 1052, 1203
FokI GGATG 4 cut(s) 20, 307, 975, 1256
FriOI GRGCYC 1 cut(s) 759
Fsp4HI GCNGC 5 cut(s) 867, 940, 1049, 1052, 1203
FspBI CTAG 8 cut(s) 77, 122, 359, 393, 402, 453, 650, 1112
GlaI GCGC 1 cut(s) 1323
GluI GCNGC 5 cut(s) 867, 940, 1049, 1052, 1203
HaeIII GGCC 2 cut(s) 500, 512
HhaI GCGC 1 cut(s) 1324
Hin1II CATG 9 cut(s) 56, 197, 209, 511, 552, 720, 824, 895, 962
Hin6I GCGC 1 cut(s) 1322
HinP1I GCGC 1 cut(s) 1322
HindIII AAGCTT 3 cut(s) 306, 348, 493
HinfI GANTC 2 cut(s) 478, 1000
HphI GGTGA 2 cut(s) 167, 437
Hpy166II GTNNAC 2 cut(s) 1117, 1197
Hpy188I TCNGA 4 cut(s) 33, 742, 1063, 1351
Hpy188III TCNNGA 3 cut(s) 206, 437, 821
Hpy8I GTNNAC 2 cut(s) 1117, 1197
HpyAV CCTTC 5 cut(s) 83, 362, 637, 827, 1487
HpyCH4III ACNGT 3 cut(s) 600, 1186, 1522
HpyCH4IV ACGT 1 cut(s) 992
HpyCH4V TGCA 8 cut(s) 4, 215, 677, 942, 976, 1008, 1013, 1238
HpyF10VI GCNNNNNNNGC 2 cut(s) 1464, 1473
HpyF3I CTNAG 5 cut(s) 30, 660, 1132, 1228, 1288
HpySE526I ACGT 1 cut(s) 992
Hsp92II CATG 9 cut(s) 56, 197, 209, 511, 552, 720, 824, 895, 962
HspAI GCGC 1 cut(s) 1322
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 4 cut(s) 102, 199, 439, 727
LmnI GCTCC 1 cut(s) 646
Lsp1109I GCAGC 5 cut(s) 853, 926, 1038, 1060, 1214
LweI GCATC 5 cut(s) 70, 97, 135, 442, 1049
MaeI CTAG 8 cut(s) 77, 122, 359, 393, 402, 453, 650, 1112
MaeII ACGT 1 cut(s) 992
MaeIII GTNAC 2 cut(s) 245, 526
MalI GATC 4 cut(s) 104, 201, 441, 729
MboI GATC 4 cut(s) 102, 199, 439, 727
MflI RGATCY 1 cut(s) 727
MhlI GDGCHC 1 cut(s) 759
MlsI TGGCCA 1 cut(s) 512
MluCI AATT 6 cut(s) 159, 456, 556, 618, 1206, 1376
MluNI TGGCCA 1 cut(s) 512
MlyI GAGTC 1 cut(s) 1009
MmeI TCCRAC 3 cut(s) 18, 46, 1205
MnlI CCTC 8 cut(s) 202, 433, 492, 511, 736, 741, 1285, 1312
Mox20I TGGCCA 1 cut(s) 512
Mph1103I ATGCAT 1 cut(s) 1015
MroXI GAANNNNTTC 3 cut(s) 162, 621, 828
MscI TGGCCA 1 cut(s) 512
MseI TTAA 6 cut(s) 270, 554, 849, 1169, 1338, 1425
MslI CAYNNNNRTG 1 cut(s) 694
Msp20I TGGCCA 1 cut(s) 512
MspA1I CMGCKG 2 cut(s) 939, 1051
MspR9I CCNGG 1 cut(s) 514
MvaI CCWGG 1 cut(s) 514
MvnI CGCG 1 cut(s) 1324
MwoI GCNNNNNNNGC 2 cut(s) 1464, 1473
NdeII GATC 4 cut(s) 102, 199, 439, 727
NlaIII CATG 9 cut(s) 56, 197, 209, 511, 552, 720, 824, 895, 962
NlaIV GGNNCC 4 cut(s) 541, 814, 968, 1443
NsiI ATGCAT 1 cut(s) 1015
NspI RCATGY 2 cut(s) 56, 720
PaeI GCATGC 1 cut(s) 720
PagI TCATGA 2 cut(s) 205, 820
PdmI GAANNNNTTC 3 cut(s) 162, 621, 828
PfeI GAWTC 1 cut(s) 478
PflFI GACNNNGTC 2 cut(s) 994, 1522
PflMI CCANNNNNTGG 2 cut(s) 549, 639
PkrI GCNGC 5 cut(s) 868, 941, 1050, 1053, 1204
PleI GAGTC 1 cut(s) 1008
PpsI GAGTC 1 cut(s) 1008
PshBI ATTAAT 1 cut(s) 1338
Psp124BI GAGCTC 1 cut(s) 759
Psp6I CCWGG 1 cut(s) 512
PspGI CCWGG 1 cut(s) 512
PspN4I GGNNCC 4 cut(s) 541, 814, 968, 1443
PspPI GGNCC 1 cut(s) 1441
PsrI GAACNNNNNNTAC 2 cut(s) 1092, 1124
PstNI CAGNNNCTG 2 cut(s) 604, 845
PsuI RGATCY 1 cut(s) 727
PsyI GACNNNGTC 2 cut(s) 994, 1522
PvuII CAGCTG 2 cut(s) 939, 1051
RsaI GTAC 4 cut(s) 597, 608, 701, 1070
RsaNI GTAC 4 cut(s) 596, 607, 700, 1069
RseI CAYNNNNRTG 1 cut(s) 694
SacI GAGCTC 1 cut(s) 759
SaqAI TTAA 6 cut(s) 270, 554, 849, 1169, 1338, 1425
SatI GCNGC 5 cut(s) 867, 940, 1049, 1052, 1203
Sau3AI GATC 4 cut(s) 102, 199, 439, 727
Sau96I GGNCC 1 cut(s) 1441
ScaI AGTACT 1 cut(s) 1070
SchI GAGTC 1 cut(s) 1009
ScrFI CCNGG 1 cut(s) 514
SduI GDGCHC 1 cut(s) 759
SfaNI GCATC 5 cut(s) 70, 97, 135, 442, 1049
SfcI CTRYAG 2 cut(s) 230, 870
SinI GGWCC 1 cut(s) 1441
SmiMI CAYNNNNRTG 1 cut(s) 694
SmlI CTYRAG 1 cut(s) 534
SmoI CTYRAG 1 cut(s) 534
SphI GCATGC 1 cut(s) 720
Sse9I AATT 6 cut(s) 159, 456, 556, 618, 1206, 1376
SspMI CTAG 8 cut(s) 77, 122, 359, 393, 402, 453, 650, 1112
SstI GAGCTC 1 cut(s) 759
StyD4I CCNGG 1 cut(s) 512
TaaI ACNGT 3 cut(s) 600, 1186, 1522
TaiI ACGT 1 cut(s) 995
TaqI TCGA 5 cut(s) 105, 129, 226, 998, 1213
TasI AATT 6 cut(s) 159, 456, 556, 618, 1206, 1376
TatI WGTACW 1 cut(s) 1068
TfiI GAWTC 1 cut(s) 478
Tru1I TTAA 6 cut(s) 270, 554, 849, 1169, 1338, 1425
Tru9I TTAA 6 cut(s) 270, 554, 849, 1169, 1338, 1425
TseI GCWGC 5 cut(s) 866, 939, 1048, 1051, 1202
Tth111I GACNNNGTC 2 cut(s) 994, 1522
Van91I CCANNNNNTGG 2 cut(s) 549, 639
VpaK11BI GGWCC 1 cut(s) 1441
VspI ATTAAT 1 cut(s) 1338
XapI RAATTY 2 cut(s) 159, 556
XceI RCATGY 2 cut(s) 56, 720
XcmI CCANNNNNNNNNTGG 1 cut(s) 1156
XmnI GAANNNNTTC 3 cut(s) 162, 621, 828
XspI CTAG 8 cut(s) 77, 122, 359, 393, 402, 453, 650, 1112
ZrmI AGTACT 1 cut(s) 1070
Zsp2I ATGCAT 1 cut(s) 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.