Rorug04G0413700

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
57546672 .. 57547087
416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0413700.1

Sequence Viewer

Length: 354 bp
ATGGACTTGAGGATGAAAAGATTAGGATATGAATATAACAATAAGCTCTTGCCTCTCATAAACAGCATTGACCTGTCAAGCAACAACTTACCAGGAGAAATACCGGAGGAGATAACAAATCTCTCGTACTTGGGTAGCTTGAGTTTATCTAGGAAGCAATTGACAGGAAAGATACCACAAGGCTTTGGAAGCTTACAGCAGTTGGAAACTCTTGACCTATCGATTAATCATCTTTGGGGCCCCATTCCTGTAAGCATGACTTCTATGACTCCATTGAGCAACTTAAACTTGTCATACAACAACTTGTCGATCTGGGCCAATTCCAACAGCCAACCAATTCCATACCTTCATTGA

Protein Analysis

117

Amino Acids

13.1

Weight (kDa)

6.03

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 20 - 78 7.8e-06 Leucine rich repeat
LRR_14 PF23598 32 - 98 1.4e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 128
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 3 cut(s) 46, 138, 192
AluI AGCT 3 cut(s) 46, 138, 192
AoxI GGCC 2 cut(s) 238, 315
ApaI GGGCCC 1 cut(s) 242
AseI ATTAAT 1 cut(s) 225
AspS9I GGNCC 3 cut(s) 238, 239, 315
BaeGI GKGCMC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 93
BfaI CTAG 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 93
BmgT120I GGNCC 3 cut(s) 238, 239, 315
BmiI GGNNCC 3 cut(s) 239, 240, 241
BmrFI CCNGG 1 cut(s) 93
BpuEI CTTGAG 2 cut(s) 28, 160
Bsa29I ATCGAT 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 103
BseBI CCWGG 1 cut(s) 93
BseCI ATCGAT 1 cut(s) 221
BseGI GGATG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 242
BshFI GGCC 2 cut(s) 240, 317
BshVI ATCGAT 1 cut(s) 221
BsiSI CCGG 1 cut(s) 104
BsnI GGCC 2 cut(s) 240, 317
Bsp120I GGGCCC 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 1 cut(s) 309
BspANI GGCC 2 cut(s) 240, 317
BspDI ATCGAT 1 cut(s) 221
BspLI GGNNCC 3 cut(s) 239, 240, 241
BssMI GATC 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 1 cut(s) 312
BstMBI GATC 1 cut(s) 309
BstMWI GCNNNNNNNGC 1 cut(s) 189
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
BstSLI GKGCMC 1 cut(s) 242
Bsu15I ATCGAT 1 cut(s) 221
BsuRI GGCC 2 cut(s) 240, 317
BsuTUI ATCGAT 1 cut(s) 221
BtsCI GGATG 1 cut(s) 18
Cfr13I GGNCC 3 cut(s) 238, 239, 315
ClaI ATCGAT 1 cut(s) 221
Csp6I GTAC 1 cut(s) 127
CviAII CATG 1 cut(s) 256
CviJI RGCY 7 cut(s) 46, 138, 183, 192, 240, 317, 330
CviKI_1 RGCY 7 cut(s) 46, 138, 183, 192, 240, 317, 330
CviQI GTAC 1 cut(s) 127
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 242
EcoO109I RGGNCCY 2 cut(s) 238, 239
EcoRII CCWGG 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 242
FaeI CATG 1 cut(s) 259
FaiI YATR 7 cut(s) 30, 36, 59, 257, 266, 295, 343
FalI AAGNNNNNCTT 2 cut(s) 244, 276
FatI CATG 1 cut(s) 255
FokI GGATG 1 cut(s) 25
FriOI GRGCYC 1 cut(s) 242
FspBI CTAG 1 cut(s) 150
HaeIII GGCC 2 cut(s) 240, 317
HapII CCGG 1 cut(s) 104
Hin1II CATG 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 1 cut(s) 268
HpaII CCGG 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
Hsp92II CATG 1 cut(s) 259
Kzo9I GATC 1 cut(s) 309
LpnPI CCDG 7 cut(s) 78, 86, 105, 117, 150, 261, 298
MaeI CTAG 1 cut(s) 150
MalI GATC 1 cut(s) 311
MboI GATC 1 cut(s) 309
MfeI CAATTG 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 3 cut(s) 158, 319, 336
MlyI GAGTC 1 cut(s) 262
MmeI TCCRAC 2 cut(s) 183, 348
MnlI CCTC 3 cut(s) 3, 63, 100
MseI TTAA 2 cut(s) 225, 284
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 93
MunI CAATTG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 189
NdeII GATC 1 cut(s) 309
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 3 cut(s) 239, 240, 241
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
PshBI ATTAAT 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 3 cut(s) 239, 240, 241
PspOMI GGGCCC 1 cut(s) 238
PspPI GGNCC 3 cut(s) 238, 239, 315
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SaqAI TTAA 2 cut(s) 225, 284
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 3 cut(s) 238, 239, 315
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 1 cut(s) 242
SetI ASST 6 cut(s) 48, 75, 140, 194, 219, 348
SmlI CTYRAG 2 cut(s) 7, 139
SmoI CTYRAG 2 cut(s) 7, 139
Sse9I AATT 3 cut(s) 158, 319, 336
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 91
TaqI TCGA 2 cut(s) 221, 308
TasI AATT 3 cut(s) 158, 319, 336
Tru1I TTAA 2 cut(s) 225, 284
Tru9I TTAA 2 cut(s) 225, 284
TspDTI ATGAA 3 cut(s) 29, 45, 338
VspI ATTAAT 1 cut(s) 225
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.