Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Forward (+)

25828890 .. 25829813

Gene Structure 924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTCGACAGGAGAAGCGATACCAAGAGTCGCCGTCGTCGTTTTCATTCTCAACGGAAACTCAATCTTATTAGGTCGCCGCCGTTCCTCAATCGGCAACTCCACTTTCGCTCTTCCCGGTGGCCACCTCGAATTCGGAGAGAGCTTTGAAGAATGTGCAGCGAGAGAAGTAATGGAGGAAACAGGTCTAAAGATTGAAAAGATGAAGCTTTTGACTGTTACAAACAATGTCTTCAAAGAAGCACCAACGCCATCACACTACGTCTCTGTTTCGATACGTGCGGTGTTGGTGGATCCAAGTCAAGAACCGAAGAATATGGAACCAGAGAAGTGTGAAGGATGGGATTGGTATGATTGGGAGAATCTACCAAAGCCTTTGTTTTGGCCACTTGAGAAATTGTTTGGAAGTGGTTTCAATCCTTTCACTCATGGTGGTGGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

147

Amino Acids

16.36

Weight (kDa)

5.12

Isoelectric Point (pI)

52.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	8 - 126	2.3e-22	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	79, 281
AclWI	GGATC	2 cut(s)	287, 300
AcoI	YGGCCR	2 cut(s)	121, 383
AcsI	RAATTY	1 cut(s)	131
AgsI	TTSAA	4 cut(s)	149, 197, 235, 415
AluBI	AGCT	2 cut(s)	144, 208
AluI	AGCT	2 cut(s)	144, 208
Alw26I	GTCTC	2 cut(s)	268, 432
AlwI	GGATC	2 cut(s)	287, 300
AoxI	GGCC	2 cut(s)	121, 383
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	131
AsuC2I	CCSGG	1 cut(s)	117
BalI	TGGCCA	2 cut(s)	123, 385
BamHI	GGATCC	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	2 cut(s)	259, 333
BceAI	ACGGC	2 cut(s)	17, 66
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	2 cut(s)	268, 432
BisI	GCNGC	2 cut(s)	79, 159
BlsI	GCNGC	2 cut(s)	80, 160
Bme1390I	CCNGG	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	294, 321
BmrFI	CCNGG	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	117
BsaAI	YACGTR	1 cut(s)	278
BseGI	GGATG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	123, 385
BsiSI	CCGG	1 cut(s)	117
BsmAI	GTCTC	2 cut(s)	268, 432
BsmBI	CGTCTC	1 cut(s)	268
BsnI	GGCC	2 cut(s)	123, 385
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	2 cut(s)	79, 281
BspANI	GGCC	2 cut(s)	123, 385
BspLI	GGNNCC	2 cut(s)	294, 321
BspPI	GGATC	2 cut(s)	287, 300
BspQI	GCTCTTC	1 cut(s)	117
BssMI	GATC	1 cut(s)	292
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	278
BstF5I	GGATG	1 cut(s)	344
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	2 cut(s)	268, 432
BstMBI	GATC	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	170
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	123, 385
BtsCI	GGATG	1 cut(s)	344
CviAII	CATG	1 cut(s)	428
CviJI	RGCY	5 cut(s)	123, 144, 208, 373, 385
CviKI_1	RGCY	5 cut(s)	123, 144, 208, 373, 385
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
EaeI	YGGCCR	2 cut(s)	121, 383
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	131
Esp3I	CGTCTC	1 cut(s)	268
FaeI	CATG	1 cut(s)	431
FaiI	YATR	3 cut(s)	317, 351, 429
FatI	CATG	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	79, 159
FokI	GGATG	1 cut(s)	351
Fsp4HI	GCNGC	2 cut(s)	79, 159
GluI	GCNGC	2 cut(s)	79, 159
HaeIII	GGCC	2 cut(s)	123, 385
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	1 cut(s)	431
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	2 cut(s)	27, 361
HpaII	CCGG	1 cut(s)	117
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	137
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	2 cut(s)	38, 41
HpyAV	CCTTC	1 cut(s)	329
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	2 cut(s)	261, 277
HpyCH4V	TGCA	1 cut(s)	158
HpySE526I	ACGT	2 cut(s)	261, 277
Hsp92II	CATG	1 cut(s)	431
Kzo9I	GATC	1 cut(s)	292
LguI	GCTCTTC	1 cut(s)	117
LpnPI	CCDG	3 cut(s)	130, 168, 336
Lsp1109I	GCAGC	1 cut(s)	170
MaeII	ACGT	2 cut(s)	261, 277
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	4 cut(s)	104, 161, 223, 322
MflI	RGATCY	1 cut(s)	292
MlsI	TGGCCA	2 cut(s)	123, 385
MluCI	AATT	2 cut(s)	131, 395
MluNI	TGGCCA	2 cut(s)	123, 385
MlyI	GAGTC	1 cut(s)	36
MnlI	CCTC	3 cut(s)	97, 137, 169
Mox20I	TGGCCA	2 cut(s)	123, 385
MscI	TGGCCA	2 cut(s)	123, 385
MslI	CAYNNNNRTG	1 cut(s)	432
Msp20I	TGGCCA	2 cut(s)	123, 385
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	117
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	1 cut(s)	431
NlaIV	GGNNCC	2 cut(s)	294, 321
PciSI	GCTCTTC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	361
PkrI	GCNGC	2 cut(s)	80, 160
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	294, 321
PsuI	RGATCY	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	432
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	117
SatI	GCNGC	2 cut(s)	79, 159
Sau3AI	GATC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	7 cut(s)	76, 129, 146, 187, 210, 264, 280
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	2 cut(s)	131, 395
SsiI	CCGC	2 cut(s)	79, 281
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	2 cut(s)	264, 280
TaqI	TCGA	3 cut(s)	5, 129, 272
TasI	AATT	2 cut(s)	131, 395
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	158
TspDTI	ATGAA	2 cut(s)	34, 218
TspGWI	ACGGA	1 cut(s)	69
XapI	RAATTY	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.