Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

2763857 .. 2764462

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g04390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTTAACGGAACAATACAGGGAGCGGTGCCGAAAGTGGCAGTGGTGGTGTGTTTGTTGAAAGGGAAGACGGTGATGTTGGGGCGCCGCCGTTCCTCTCTTGGCGACTCCACCTTTTCCTTCCCTGGTGGCCACCTCGAATTCGGAGAGAGCTTTGGGGAGTGTGCTGCAAGAGAAGTGAAGGAAGAAACTGGGCTGGACATCGAGAAGATAGAGGTGCTGAAGGTCACAAACAACATATTCGAAGACAAAGGCAAGCCGTACCACTACGTAGGGATTTATGTGCGAGCAATGTTGGCAAGTCCCGATCAAGAGCCCGAGAATGTGGAGCCAGACATGTGCGATGGTTGGGATTGGTATGAGTGGGATAATCTACCCAAACCACTCTTTCGCCCTTTGCAGAATGCTGTAGATTCCGGATTTAATCCTTTTGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

147

Amino Acids

16.27

Weight (kDa)

4.74

Isoelectric Point (pI)

51.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	12 - 128	1.1e-19	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	28, 84
AccBSI	CCGCTC	1 cut(s)	26
AccIII	TCCGGA	1 cut(s)	416
AciI	CCGC	2 cut(s)	26, 88
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	242
AcyI	GRCGYC	1 cut(s)	85
AfaI	GTAC	1 cut(s)	263
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	317
Aor13HI	TCCGGA	1 cut(s)	416
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	85
AsuII	TTCGAA	1 cut(s)	243
AvaI	CYCGRG	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	132
BanI	GGYRCC	2 cut(s)	28, 84
BanII	GRGCYC	1 cut(s)	318
BbsI	GAAGAC	2 cut(s)	74, 252
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	2 cut(s)	75, 244
BciT130I	CCWGG	1 cut(s)	126
BfmI	CTRYAG	1 cut(s)	408
BfoI	RGCGCY	1 cut(s)	88
BisI	GCNGC	2 cut(s)	88, 168
BlsI	GCNGC	2 cut(s)	89, 169
Bme1390I	CCNGG	1 cut(s)	126
BmeT110I	CYCGRG	1 cut(s)	317
BmiI	GGNNCC	3 cut(s)	30, 86, 330
BmrFI	CCNGG	1 cut(s)	126
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	424
BmuI	ACTGGG	1 cut(s)	201
BpiI	GAAGAC	2 cut(s)	74, 252
Bpu14I	TTCGAA	1 cut(s)	243
BsaAI	YACGTR	1 cut(s)	271
BsaHI	GRCGYC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	416
Bse1I	ACTGG	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	297
BseAI	TCCGGA	1 cut(s)	416
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	154
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	2 cut(s)	28, 84
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	288
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	317
Bsp119I	TTCGAA	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp13I	TCCGGA	1 cut(s)	416
Bsp143I	GATC	1 cut(s)	307
BspACI	CCGC	2 cut(s)	26, 88
BspANI	GGCC	1 cut(s)	132
BspEI	TCCGGA	1 cut(s)	416
BspLI	GGNNCC	3 cut(s)	30, 86, 330
BspT104I	TTCGAA	1 cut(s)	243
BspT107I	GGYRCC	2 cut(s)	28, 84
BsrBI	CCGCTC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	1 cut(s)	307
BssNI	GRCGYC	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	73
BstACI	GRCGYC	1 cut(s)	85
BstBAI	YACGTR	1 cut(s)	271
BstBI	TTCGAA	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	257, 288
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	124
BstSFI	CTRYAG	1 cut(s)	408
BstSNI	TACGTA	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	154
BstV2I	GAAGAC	2 cut(s)	74, 252
BsuRI	GGCC	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	357
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	257, 288
CfoI	GCGC	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	2 cut(s)	337, 438
CviJI	RGCY	6 cut(s)	132, 153, 196, 259, 316, 331
CviKI_1	RGCY	6 cut(s)	132, 153, 196, 259, 316, 331
CviQI	GTAC	1 cut(s)	262
DinI	GGCGCC	1 cut(s)	86
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	130
Eco105I	TACGTA	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	317
EcoRI	GAATTC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	318
EgeI	GGCGCC	1 cut(s)	86
EheI	GGCGCC	1 cut(s)	86
FaeI	CATG	2 cut(s)	340, 441
FaiI	YATR	5 cut(s)	239, 282, 338, 360, 439
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	2 cut(s)	336, 437
Fnu4HI	GCNGC	2 cut(s)	88, 168
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	2 cut(s)	88, 168
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	2 cut(s)	88, 168
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	417
HhaI	GCGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	85
Hin1II	CATG	2 cut(s)	340, 441
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	2 cut(s)	107, 413
HpaI	GTTAAC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	417
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	146
Hpy188III	TCNNGA	4 cut(s)	205, 305, 311, 417
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	3 cut(s)	130, 175, 217
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	3 cut(s)	170, 400, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	85
Hsp92II	CATG	2 cut(s)	340, 441
HspAI	GCGC	1 cut(s)	85
KasI	GGCGCC	1 cut(s)	84
Kpn2I	TCCGGA	1 cut(s)	416
KspAI	GTTAAC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	2 cut(s)	23, 328
LpnPI	CCDG	7 cut(s)	5, 111, 138, 177, 182, 345, 430
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	1 cut(s)	424
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	1 cut(s)	309
MbiI	CCGCTC	1 cut(s)	26
MboI	GATC	1 cut(s)	307
MboII	GAAGA	4 cut(s)	79, 197, 220, 257
MhlI	GDGCHC	1 cut(s)	318
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	1 cut(s)	140
MluNI	TGGCCA	1 cut(s)	132
Mly113I	GGCGCC	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	3 cut(s)	106, 146, 208
Mox20I	TGGCCA	1 cut(s)	132
Mph1103I	ATGCAT	1 cut(s)	439
MroI	TCCGGA	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	2 cut(s)	6, 423
Msp20I	TGGCCA	1 cut(s)	132
MspI	CCGG	1 cut(s)	417
MspR9I	CCNGG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	296
NarI	GGCGCC	1 cut(s)	85
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	340, 441
NlaIV	GGNNCC	3 cut(s)	30, 86, 330
NmuCI	GTSAC	1 cut(s)	226
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	1 cut(s)	340
NspV	TTCGAA	1 cut(s)	243
PciI	ACATGT	1 cut(s)	336
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	89, 169
PleI	GAGTC	1 cut(s)	101
PluTI	GGCGCC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	101
Ppu21I	YACGTR	1 cut(s)	271
PscI	ACATGT	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	3 cut(s)	30, 86, 330
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SaqAI	TTAA	2 cut(s)	6, 423
SatI	GCNGC	2 cut(s)	88, 168
Sau3AI	GATC	1 cut(s)	307
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	6 cut(s)	116, 138, 155, 219, 228, 273
SfaNI	GCATC	1 cut(s)	424
SfcI	CTRYAG	1 cut(s)	408
SfoI	GGCGCC	1 cut(s)	86
SfuI	TTCGAA	1 cut(s)	243
SnaBI	TACGTA	1 cut(s)	271
Sse9I	AATT	1 cut(s)	140
SsiI	CCGC	2 cut(s)	26, 88
SspDI	GGCGCC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	3 cut(s)	138, 204, 243
TasI	AATT	1 cut(s)	140
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	2 cut(s)	6, 423
Tru9I	TTAA	2 cut(s)	6, 423
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	226
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	1 cut(s)	48
XapI	RAATTY	1 cut(s)	140
XceI	RCATGY	1 cut(s)	340
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.