Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

59564693 .. 59565090

Gene Structure 398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51227

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGAGGGCAGTGCTGGCAGATCCTCGTCAAGAGCCCCAGAATATTGAGCCAAAATTCTGTGATGGTTGGGGATGGTATGAGTGGGACAATCTTCCGAAGCCACTCTTTTGGCCTTTGGAGAACGTGGTTCAGGATGGATTTAATCCTTTTCCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

52

Amino Acids

6.19

Weight (kDa)

4.29

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	53
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	36
BccI	CCATC	3 cut(s)	56, 66, 128
BseGI	GGATG	2 cut(s)	77, 139
BshFI	GGCC	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	19
BspANI	GGCC	1 cut(s)	112
BspPI	GGATC	1 cut(s)	14
BssMI	GATC	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	77, 139
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	19
BstXI	CCANNNNNNTGG	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	77, 139
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	15
CviAII	CATG	1 cut(s)	156
CviJI	RGCY	4 cut(s)	34, 49, 100, 112
CviKI_1	RGCY	4 cut(s)	34, 49, 100, 112
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	36
FaeI	CATG	1 cut(s)	159
FaiI	YATR	2 cut(s)	78, 157
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	1 cut(s)	155
FokI	GGATG	2 cut(s)	84, 146
FriOI	GRGCYC	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	159
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	2 cut(s)	29, 131
HpyCH4IV	ACGT	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	19
LpnPI	CCDG	2 cut(s)	50, 116
MaeII	ACGT	1 cut(s)	123
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	83
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	1 cut(s)	53
MnlI	CCTC	1 cut(s)	33
MseI	TTAA	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	1 cut(s)	126
SgeI	CNNG	6 cut(s)	26, 36, 41, 49, 136, 143
Sse9I	AATT	1 cut(s)	53
SspI	AATATT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	126
TasI	AATT	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	15
TspRI	CASTG	1 cut(s)	15
XapI	RAATTY	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.