Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Forward (+)

47282172 .. 47283038

Gene Structure 867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0370500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTGAAGCTCTTATTTCAGTTCTCCTAGAACAATTGGCTTCAATCATCCATCAACAGGTACAACAAGAAGTAAAATTGGTAGTTGATGTTAAGAAAGAAGTTGCAAAGCTCACCCGCAATTTCCGAGCTATAGAAGCCGTGCTCAAAGATGCAGAGGAGAGGCAAGTGAAGGAGGCTTCCGTTAAACTATGGCTGGATGATTTAAAGGACGTGTCCAACGAGATGGAGGACGTGTTGGATGATTGGAACACTGAAATTCTGAGGCTACAAATTGAGAAACAAGAGAAAGAAGCTGGAAATGCTCTTGATATGACTAAGAAGAAGATTAAAGATCTCAATGAAAGGTTAGCAACAATTGCTGATATTAGGCAAAAGTTTAACTTTCAGTGCACAAAAAGTGGTATTGAACATATTGAGCGACAAAAGACTACTTCTTTTGTTGATCAAACATTTGGTCTGGTAGATGAAAAAGAATTATTGGTGGGAAAGTTGCTGAGTGAGAGTAATCCTGAAGGGCAGAACCCCCTTGTCATCCCTATTGTAGGGATGGGTGGAATCGGTAAAACAACACTTTCCCAACTAGCATATAATGACGAAGAAGTGAAGGCTAATTTCACAAACAGAATATGGGTTTGTGTCTCAGACCCATTTGATGAGCTCAACATAGCCAAAGCCATCATTGTTGCCCTTGATGGAACTGTCAATTCCCTTTCGAATGACCTAGAATCTTTATTTCAATGTGTGCACAAGTCTATCAAGGAAAAAAGTTTCTCCTTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

261

Amino Acids

29.4

Weight (kDa)

4.95

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	6 - 97	1.2e-20	Rx N-terminal domain
NB-ARC	PF00931	158 - 237	7.8e-14	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	258
AcuI	CTGAAG	2 cut(s)	27, 534
AfaI	GTAC	1 cut(s)	63
AfiI	CCNNNNNNNGG	2 cut(s)	58, 545
AflIII	ACRYGT	2 cut(s)	213, 234
AgsI	TTSAA	3 cut(s)	45, 410, 740
AjiI	CACGTC	2 cut(s)	214, 235
AluBI	AGCT	5 cut(s)	11, 112, 131, 296, 661
AluI	AGCT	5 cut(s)	11, 112, 131, 296, 661
Alw21I	GWGCWC	4 cut(s)	147, 395, 663, 750
Alw26I	GTCTC	1 cut(s)	646
Alw44I	GTGCAC	2 cut(s)	391, 746
ApaLI	GTGCAC	2 cut(s)	391, 746
ApoI	RAATTY	1 cut(s)	258
ArsI	GACNNNNNNTTYG	2 cut(s)	442, 474
AsuHPI	GGTGA	1 cut(s)	106
AsuII	TTCGAA	1 cut(s)	716
BaeGI	GKGCMC	2 cut(s)	395, 750
BanII	GRGCYC	1 cut(s)	663
Bbv12I	GWGCWC	4 cut(s)	147, 395, 663, 750
BccI	CCATC	5 cut(s)	60, 220, 544, 686, 689
BceAI	ACGGC	1 cut(s)	125
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	1 cut(s)	646
BfaI	CTAG	3 cut(s)	29, 584, 725
BfmI	CTRYAG	1 cut(s)	132
BglII	AGATCT	1 cut(s)	334
BmgBI	CACGTC	2 cut(s)	214, 235
BmsI	GCATC	1 cut(s)	142
Bpu14I	TTCGAA	1 cut(s)	716
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 545
BseGI	GGATG	5 cut(s)	48, 205, 247, 534, 555
BseLI	CCNNNNNNNGG	2 cut(s)	58, 545
BseMII	CTCAG	3 cut(s)	254, 488, 657
BseRI	GAGGAG	1 cut(s)	173
BseSI	GKGCMC	2 cut(s)	395, 750
BsiHKAI	GWGCWC	4 cut(s)	147, 395, 663, 750
BslI	CCNNNNNNNGG	2 cut(s)	58, 545
BsmAI	GTCTC	1 cut(s)	646
Bsp119I	TTCGAA	1 cut(s)	716
Bsp1286I	GDGCHC	4 cut(s)	147, 395, 663, 750
Bsp143I	GATC	2 cut(s)	334, 445
BspACI	CCGC	1 cut(s)	118
BspCNI	CTCAG	3 cut(s)	255, 489, 656
BspT104I	TTCGAA	1 cut(s)	716
BssMI	GATC	2 cut(s)	334, 445
Bst4CI	ACNGT	1 cut(s)	703
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstBI	TTCGAA	1 cut(s)	716
BstDEI	CTNAG	5 cut(s)	263, 318, 497, 643, 783
BstENI	CCTNNNNNAGG	1 cut(s)	543
BstF5I	GGATG	5 cut(s)	48, 205, 247, 534, 555
BstKTI	GATC	2 cut(s)	337, 448
BstMAI	GTCTC	1 cut(s)	646
BstMBI	GATC	2 cut(s)	334, 445
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 302, 359
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	2 cut(s)	395, 750
BstX2I	RGATCY	1 cut(s)	334
BstXI	CCANNNNNNTGG	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	334
BtrI	CACGTC	2 cut(s)	214, 235
BtsCI	GGATG	5 cut(s)	48, 205, 247, 534, 555
BtsIMutI	CAGTG	2 cut(s)	252, 395
Csp6I	GTAC	1 cut(s)	62
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	5 cut(s)	263, 318, 497, 643, 783
DpnI	GATC	2 cut(s)	336, 447
DpnII	GATC	2 cut(s)	334, 445
DraI	TTTAAA	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	661
Eco24I	GRGCYC	1 cut(s)	663
Eco53kI	GAGCTC	1 cut(s)	661
Eco57I	CTGAAG	2 cut(s)	27, 534
EcoICRI	GAGCTC	1 cut(s)	661
EcoNI	CCTNNNNNAGG	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	663
FaiI	YATR	8 cut(s)	134, 193, 314, 414, 589, 591, 631, 668
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FauI	CCCGC	1 cut(s)	125
FbaI	TGATCA	1 cut(s)	445
FokI	GGATG	5 cut(s)	35, 212, 254, 521, 562
FriOI	GRGCYC	1 cut(s)	663
FspBI	CTAG	3 cut(s)	29, 584, 725
HinfI	GANTC	2 cut(s)	558, 728
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	393, 748
Hpy188I	TCNGA	3 cut(s)	128, 264, 646
Hpy188III	TCNNGA	2 cut(s)	308, 512
Hpy8I	GTNNAC	2 cut(s)	393, 748
HpyAV	CCTTC	3 cut(s)	166, 509, 601
HpyCH4III	ACNGT	1 cut(s)	703
HpyCH4IV	ACGT	2 cut(s)	213, 234
HpyCH4V	TGCA	4 cut(s)	107, 155, 393, 748
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 302, 359
HpyF3I	CTNAG	5 cut(s)	263, 318, 497, 643, 783
HpySE526I	ACGT	2 cut(s)	213, 234
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	334, 445
LpnPI	CCDG	5 cut(s)	44, 182, 282, 446, 525
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	3 cut(s)	29, 584, 725
MaeII	ACGT	2 cut(s)	213, 234
MalI	GATC	2 cut(s)	336, 447
MboI	GATC	2 cut(s)	334, 445
MboII	GAAGA	3 cut(s)	334, 337, 611
MfeI	CAATTG	2 cut(s)	35, 357
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	4 cut(s)	147, 395, 663, 750
MluCI	AATT	9 cut(s)	35, 77, 121, 258, 273, 357, 476, 613, 706
MmeI	TCCRAC	2 cut(s)	219, 243
MnlI	CCTC	5 cut(s)	151, 156, 169, 223, 258
MseI	TTAA	5 cut(s)	93, 186, 206, 330, 381
MunI	CAATTG	2 cut(s)	35, 357
MwoI	GCNNNNNNNGC	3 cut(s)	137, 302, 359
NdeII	GATC	2 cut(s)	334, 445
NspV	TTCGAA	1 cut(s)	716
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	558, 728
Psp124BI	GAGCTC	1 cut(s)	663
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	663
SaqAI	TTAA	5 cut(s)	93, 186, 206, 330, 381
Sau3AI	GATC	2 cut(s)	334, 445
SduI	GDGCHC	4 cut(s)	147, 395, 663, 750
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	132
SfuI	TTCGAA	1 cut(s)	716
Sse9I	AATT	9 cut(s)	35, 77, 121, 258, 273, 357, 476, 613, 706
SsiI	CCGC	1 cut(s)	118
SspMI	CTAG	3 cut(s)	29, 584, 725
SstI	GAGCTC	1 cut(s)	663
TaaI	ACNGT	1 cut(s)	703
TaiI	ACGT	2 cut(s)	216, 237
TaqI	TCGA	1 cut(s)	716
TasI	AATT	9 cut(s)	35, 77, 121, 258, 273, 357, 476, 613, 706
TfiI	GAWTC	2 cut(s)	558, 728
Tru1I	TTAA	5 cut(s)	93, 186, 206, 330, 381
Tru9I	TTAA	5 cut(s)	93, 186, 206, 330, 381
TscAI	CASTG	2 cut(s)	259, 395
TspDTI	ATGAA	2 cut(s)	357, 483
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	2 cut(s)	259, 395
VneI	GTGCAC	2 cut(s)	391, 746
XagI	CCTNNNNNAGG	1 cut(s)	543
XapI	RAATTY	1 cut(s)	258
XspI	CTAG	3 cut(s)	29, 584, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.