Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

66709001 .. 66709769

Gene Structure 769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00216030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGTTAACGAGACGGTGGTTGAAGCTGCGATGCCTGGCAAGGTGCCCAAAGTGGTAGTTGTGGTGTGCTTGTTGAGAGGGAACAAGGTGTTGTTGGGACGGCGCCGCTCATCTCTTGGTGAGAGCTTTGAGGAGTGTGCAACAAGAGAAGTGAAGGACGAAACTGGTTTAGACATTGATAAGTTAGAGTTTCTGACAATCACAAACAACCTATTCTTAGACAAAGCCCAACCATACCATTATGTGGTGATTTCTATGCGAGTAATCTTGGCAGATCATCAACAACCTCAGAATATTGAGCCAGACTTTTGTGATGGTTGGGGTTGGTATGAGTGGGACAACCTCCCCAAGCCACTCTTTTCGCCCTTGGAAAAAGCAGTTCAGGCTGGATTTAATCCTTTCCCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

136

Amino Acids

15.47

Weight (kDa)

5.01

Isoelectric Point (pI)

56.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	19 - 121	2.1e-09	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	43, 102
AccB7I	CCANNNNNTGG	1 cut(s)	244
AccBSI	CCGCTC	1 cut(s)	108
AciI	CCGC	1 cut(s)	106
AcyI	GRCGYC	1 cut(s)	103
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	26, 126
AluI	AGCT	2 cut(s)	26, 126
Alw26I	GTCTC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	131, 259
BaeGI	GKGCMC	1 cut(s)	48
BanI	GGYRCC	2 cut(s)	43, 102
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	5
BfoI	RGCGCY	1 cut(s)	106
BisI	GCNGC	2 cut(s)	27, 106
BlsI	GCNGC	2 cut(s)	28, 107
Bme1390I	CCNGG	1 cut(s)	36
BmiI	GGNNCC	2 cut(s)	45, 104
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	13
BshNI	GGYRCC	2 cut(s)	43, 102
BslFI	GGGAC	2 cut(s)	111, 350
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	5
BsmBI	CGTCTC	1 cut(s)	5
BsmFI	GGGAC	2 cut(s)	111, 350
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	45, 104
BspT107I	GGYRCC	2 cut(s)	43, 102
BsrBI	CCGCTC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	1 cut(s)	274
BssNI	GRCGYC	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	16
BstACI	GRCGYC	1 cut(s)	103
BstDEI	CTNAG	2 cut(s)	217, 288
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	34
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	13
BtgZI	GCGATG	1 cut(s)	44
CfoI	GCGC	1 cut(s)	105
CviJI	RGCY	6 cut(s)	26, 126, 227, 301, 352, 386
CviKI_1	RGCY	6 cut(s)	26, 126, 227, 301, 352, 386
DdeI	CTNAG	2 cut(s)	217, 288
DinI	GGCGCC	1 cut(s)	104
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	366
EgeI	GGCGCC	1 cut(s)	104
EheI	GGCGCC	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	366
Esp3I	CGTCTC	1 cut(s)	5
FaiI	YATR	4 cut(s)	235, 243, 257, 330
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	2 cut(s)	111, 350
Fnu4HI	GCNGC	2 cut(s)	27, 106
Fsp4HI	GCNGC	2 cut(s)	27, 106
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	2 cut(s)	27, 106
HaeII	RGCGCY	1 cut(s)	106
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HpaI	GTTAAC	1 cut(s)	7
HphI	GGTGA	2 cut(s)	131, 259
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	195, 291
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	2 cut(s)	217, 288
Hsp92I	GRCGYC	1 cut(s)	103
HspAI	GCGC	1 cut(s)	103
KasI	GGCGCC	1 cut(s)	102
KspAI	GTTAAC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	274
LpnPI	CCDG	6 cut(s)	21, 48, 150, 315, 368, 372
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	1 cut(s)	21
MalI	GATC	1 cut(s)	276
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	48
Mly113I	GGCGCC	1 cut(s)	103
MnlI	CCTC	4 cut(s)	71, 124, 297, 353
MseI	TTAA	3 cut(s)	6, 393, 409
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	383
NarI	GGCGCC	1 cut(s)	103
NdeII	GATC	1 cut(s)	274
NlaIV	GGNNCC	2 cut(s)	45, 104
PflMI	CCANNNNNTGG	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	28, 107
PluTI	GGCGCC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	45, 104
SaqAI	TTAA	3 cut(s)	6, 393, 409
SatI	GCNGC	2 cut(s)	27, 106
Sau3AI	GATC	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	7 cut(s)	28, 45, 90, 128, 213, 289, 345
SfaNI	GCATC	1 cut(s)	21
SfoI	GGCGCC	1 cut(s)	104
SsiI	CCGC	1 cut(s)	106
SspDI	GGCGCC	1 cut(s)	102
SspI	AATATT	1 cut(s)	295
StyD4I	CCNGG	1 cut(s)	34
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	16
TauI	GCSGC	1 cut(s)	108
Tru1I	TTAA	3 cut(s)	6, 393, 409
Tru9I	TTAA	3 cut(s)	6, 393, 409
TseI	GCWGC	1 cut(s)	26
Van91I	CCANNNNNTGG	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.