Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

3431958 .. 3432655

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1048900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCAAAACGGGATTGCGGCGCCGAGAGTGGTGGTTGTGGTGTGCCTGTTGAAAGGGAAGAAGGTGCTCTTAGGACGCCGTCGTTCCTCCATTGGTGACTCCAAGTTTTCCCTCCCCAGTGGTCACCTCGAGTTCGGTGAGAGCTTTGAGGAGTGTGCAGCAAGAGAGCTGAAGGAAGAAACTGACTTGGACATTAAAAATATAGAATTGCTGACGGTCACAAACCATGTGTTCCTAGAGGAAGCGAAGCCGTGCCACTACGTGGCGATTGTCACCAGAGCAGTGTTAGCAGATGAAGATCAAGAACCTCGTAATATGGAGCCAAACATGTGTGATGGTTGGGATTGGTATGAGTGGGATAATCTCCCTACGCCACTCTTTTGGCCTTTGGAGAAGGCGGTGCAGACCGGATTTAATCCTTTCCGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

144

Amino Acids

16.3

Weight (kDa)

4.98

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	9 - 127	4.3e-20	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccB7I	CCANNNNNTGG	1 cut(s)	262
AciI	CCGC	2 cut(s)	17, 398
AcuI	CTGAAG	1 cut(s)	191
AcyI	GRCGYC	2 cut(s)	20, 76
AdeI	CACNNNGTG	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	262
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	1 cut(s)	52
AluBI	AGCT	2 cut(s)	144, 169
AluI	AGCT	2 cut(s)	144, 169
Alw21I	GWGCWC	1 cut(s)	69
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	22
AsuHPI	GGTGA	4 cut(s)	107, 116, 149, 265
AvaI	CYCGRG	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	2 cut(s)	63, 235
BfaI	CTAG	1 cut(s)	236
BfoI	RGCGCY	1 cut(s)	23
BisI	GCNGC	2 cut(s)	18, 159
BlsI	GCNGC	2 cut(s)	19, 160
BmeT110I	CYCGRG	1 cut(s)	128
BmiI	GGNNCC	2 cut(s)	21, 321
BmrI	ACTGGG	1 cut(s)	111
BmuI	ACTGGG	1 cut(s)	111
BsaAI	YACGTR	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	297
BsaHI	GRCGYC	2 cut(s)	20, 76
BsaWI	WCCGGW	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	117
Bse8I	GATNNNNATC	1 cut(s)	297
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	170
BsgI	GTGCAG	2 cut(s)	177, 422
BshFI	GGCC	1 cut(s)	385
BshNI	GGYRCC	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	408
BslI	CCNNNNNNNGG	1 cut(s)	262
BsnI	GGCC	1 cut(s)	385
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	2 cut(s)	17, 398
BspANI	GGCC	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	21, 321
BspT107I	GGYRCC	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	117
BssMI	GATC	1 cut(s)	298
BssNI	GRCGYC	2 cut(s)	20, 76
Bst4CI	ACNGT	1 cut(s)	217
BstACI	GRCGYC	2 cut(s)	20, 76
BstBAI	YACGTR	1 cut(s)	262
BstDEI	CTNAG	1 cut(s)	70
BstEII	GGTNACC	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNSI	RCATGY	1 cut(s)	331
BstPI	GGTNACC	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	170
BstXI	CCANNNNNNTGG	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	385
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	124, 288
CfoI	GCGC	1 cut(s)	22
CseI	GACGC	1 cut(s)	84
CviAII	CATG	3 cut(s)	227, 328, 429
CviJI	RGCY	5 cut(s)	144, 169, 250, 322, 385
CviKI_1	RGCY	5 cut(s)	144, 169, 250, 322, 385
DdeI	CTNAG	1 cut(s)	70
DinI	GGCGCC	1 cut(s)	21
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
DraIII	CACNNNGTG	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	191
Eco88I	CYCGRG	1 cut(s)	128
Eco91I	GGTNACC	1 cut(s)	122
EcoO65I	GGTNACC	1 cut(s)	122
EgeI	GGCGCC	1 cut(s)	21
EheI	GGCGCC	1 cut(s)	21
FaeI	CATG	3 cut(s)	230, 331, 432
FaiI	YATR	6 cut(s)	203, 228, 317, 329, 351, 430
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	3 cut(s)	226, 327, 428
Fnu4HI	GCNGC	2 cut(s)	18, 159
Fsp4HI	GCNGC	2 cut(s)	18, 159
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	2 cut(s)	18, 159
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	385
HapII	CCGG	1 cut(s)	408
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	1 cut(s)	22
Hin1I	GRCGYC	2 cut(s)	20, 76
Hin1II	CATG	3 cut(s)	230, 331, 432
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	4 cut(s)	107, 116, 149, 265
Hpy188III	TCNNGA	1 cut(s)	302
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	3 cut(s)	55, 166, 388
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	3 cut(s)	4, 158, 403
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	1 cut(s)	70
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	2 cut(s)	20, 76
Hsp92II	CATG	3 cut(s)	230, 331, 432
HspAI	GCGC	1 cut(s)	20
KasI	GGCGCC	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	4 cut(s)	59, 130, 289, 421
Lsp1109I	GCAGC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	4 cut(s)	95, 122, 217, 271
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	3 cut(s)	70, 188, 308
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	1 cut(s)	206
Mly113I	GGCGCC	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	6 cut(s)	97, 122, 137, 142, 232, 318
MseI	TTAA	2 cut(s)	195, 414
MspI	CCGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	287
NarI	GGCGCC	1 cut(s)	20
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	230, 331, 432
NlaIV	GGNNCC	2 cut(s)	21, 321
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	4 cut(s)	95, 122, 217, 271
NspI	RCATGY	1 cut(s)	331
PaeR7I	CTCGAG	1 cut(s)	128
PciI	ACATGT	1 cut(s)	327
PflFI	GACNNNGTC	1 cut(s)	78
PflMI	CCANNNNNTGG	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	19, 160
PleI	GAGTC	1 cut(s)	92
PluTI	GGCGCC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	92
Ppu21I	YACGTR	1 cut(s)	262
PscI	ACATGT	1 cut(s)	327
PspEI	GGTNACC	1 cut(s)	122
PspN4I	GGNNCC	2 cut(s)	21, 321
PspXI	VCTCGAGB	1 cut(s)	128
PsyI	GACNNNGTC	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	195, 414
SatI	GCNGC	2 cut(s)	18, 159
Sau3AI	GATC	1 cut(s)	298
SchI	GAGTC	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	6 cut(s)	66, 129, 146, 171, 264, 310
SfoI	GGCGCC	1 cut(s)	21
Sfr274I	CTCGAG	1 cut(s)	128
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	206
SsiI	CCGC	2 cut(s)	17, 398
SspDI	GGCGCC	1 cut(s)	19
SspMI	CTAG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	1 cut(s)	129
TasI	AATT	1 cut(s)	206
TauI	GCSGC	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	195, 414
Tru9I	TTAA	2 cut(s)	195, 414
TscAI	CASTG	2 cut(s)	124, 288
TseFI	GTSAC	4 cut(s)	95, 122, 217, 271
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	4 cut(s)	95, 122, 217, 271
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	2 cut(s)	124, 288
Tth111I	GACNNNGTC	1 cut(s)	78
Van91I	CCANNNNNTGG	1 cut(s)	262
XceI	RCATGY	1 cut(s)	331
XhoI	CTCGAG	1 cut(s)	128
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.