Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

3454692 .. 3455488

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1049100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAAAACGGGACTACAGCCGCCGCCGCGAAGCCTAGAGTGGCGGTGGTGGTGTTTTTGCTGAGAGGCAAAACGGTGCTGTTGGGACGCCGCCGCTCCTCCGTCGGCGACTCTACCTTCGCCCTCCCCGGCGGCCATCTCGAATTCGAGAGCTTTGAGGAGTGCGCGGCGAGAGAACTGAAGGAAGAAACTGGGCTGGACATTGAGAAGGAGATGGAGTTGCTGACGGTCACGAACAATTTGTTCTTAGAGCCGCCGAAGCCGTCGCATTACGTGACGGTTTTCATGCGCGGAGTGGCGGCGGATCCAGATCAGGAGCCCCAAAACCTGGAGCCAAACAAGTGCGATGGTTGGGAGTGGTACGAGTGGGACAATCTCCCAAATCCCCTCTTTTGGCCTCTGGAGAAAATGGTCAGGACCGGATTTAGTCCTTTCCCCAAAACAGTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

151

Amino Acids

16.95

Weight (kDa)

4.87

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	12 - 134	2e-22	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccBSI	CCGCTC	1 cut(s)	96
AccII	CGCG	3 cut(s)	29, 167, 291
AclWI	GGATC	2 cut(s)	299, 312
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	88
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	328, 393
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
AlwI	GGATC	2 cut(s)	299, 312
AoxI	GGCC	2 cut(s)	133, 395
ApoI	RAATTY	1 cut(s)	143
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AspLEI	GCGC	2 cut(s)	167, 291
AspS9I	GGNCC	1 cut(s)	417
AsuC2I	CCSGG	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	417
BamHI	GGATCC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	321
BccI	CCATC	3 cut(s)	144, 208, 341
BceAI	ACGGC	1 cut(s)	247
BciT130I	CCWGG	1 cut(s)	329
BcnI	CCSGG	1 cut(s)	129
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	9 cut(s)	21, 24, 27, 91, 94, 133, 168, 254, 300
BlsI	GCNGC	9 cut(s)	22, 25, 28, 92, 95, 134, 169, 255, 301
Bme1390I	CCNGG	2 cut(s)	129, 329
Bme18I	GGWCC	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	3 cut(s)	306, 318, 333
BmrFI	CCNGG	2 cut(s)	129, 329
BmrI	ACTGGG	1 cut(s)	201
BmuI	ACTGGG	1 cut(s)	201
BpmI	CTGGAG	2 cut(s)	350, 422
BpuMI	CCSGG	1 cut(s)	129
BsaAI	YACGTR	1 cut(s)	274
BsaBI	GATNNNNATC	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	419
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 393
Bse1I	ACTGG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	127
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	2 cut(s)	328, 393
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	2 cut(s)	88, 173
Bsh1236I	CGCG	3 cut(s)	29, 167, 291
BshFI	GGCC	2 cut(s)	135, 397
BsiSI	CCGG	2 cut(s)	129, 420
BslFI	GGGAC	3 cut(s)	25, 99, 383
BslI	CCNNNNNNNGG	2 cut(s)	328, 393
BsmFI	GGGAC	3 cut(s)	25, 99, 383
BsnI	GGCC	2 cut(s)	135, 397
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	304, 310
BspANI	GGCC	2 cut(s)	135, 397
BspCNI	CTCAG	1 cut(s)	54
BspFNI	CGCG	3 cut(s)	29, 167, 291
BspLI	GGNNCC	3 cut(s)	306, 318, 333
BspPI	GGATC	2 cut(s)	299, 312
BsrBI	CCGCTC	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	2 cut(s)	304, 310
BssNI	GRCGYC	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	4 cut(s)	76, 229, 280, 445
BstACI	GRCGYC	1 cut(s)	88
BstBAI	YACGTR	1 cut(s)	274
BstDEI	CTNAG	2 cut(s)	62, 247
BstFNI	CGCG	3 cut(s)	29, 167, 291
BstHHI	GCGC	2 cut(s)	167, 291
BstKTI	GATC	2 cut(s)	307, 313
BstMBI	GATC	2 cut(s)	304, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 259
BstNI	CCWGG	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	127, 327
BstSFI	CTRYAG	1 cut(s)	15
BstUI	CGCG	3 cut(s)	29, 167, 291
BstX2I	RGATCY	1 cut(s)	304
BstXI	CCANNNNNNTGG	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	135, 397
BtgZI	GCGATG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	450
CfoI	GCGC	2 cut(s)	167, 291
Cfr13I	GGNCC	1 cut(s)	417
CseI	GACGC	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	1 cut(s)	286
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	2 cut(s)	62, 247
DpnI	GATC	2 cut(s)	306, 312
DpnII	GATC	2 cut(s)	304, 310
EaeI	YGGCCR	1 cut(s)	133
EciI	GGCGGA	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	200
EcoRI	GAATTC	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	321
FaeI	CATG	1 cut(s)	289
FaiI	YATR	1 cut(s)	287
FaqI	GGGAC	3 cut(s)	25, 99, 383
FatI	CATG	1 cut(s)	285
Fnu4HI	GCNGC	9 cut(s)	21, 24, 27, 91, 94, 133, 168, 254, 300
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	9 cut(s)	21, 24, 27, 91, 94, 133, 168, 254, 300
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	2 cut(s)	166, 290
GluI	GCNGC	9 cut(s)	21, 24, 27, 91, 94, 133, 168, 254, 300
GsuI	CTGGAG	2 cut(s)	350, 422
HaeIII	GGCC	2 cut(s)	135, 397
HapII	CCGG	2 cut(s)	129, 420
HgaI	GACGC	1 cut(s)	96
HhaI	GCGC	2 cut(s)	167, 291
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	289
Hin6I	GCGC	2 cut(s)	165, 289
HinP1I	GCGC	2 cut(s)	165, 289
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	2 cut(s)	129, 420
Hpy188III	TCNNGA	7 cut(s)	140, 148, 232, 308, 314, 401, 415
Hpy99I	CGWCG	2 cut(s)	107, 268
HpyAV	CCTTC	3 cut(s)	127, 175, 202
HpyCH4III	ACNGT	4 cut(s)	76, 229, 280, 445
HpyCH4IV	ACGT	1 cut(s)	273
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 259
HpyF3I	CTNAG	2 cut(s)	62, 247
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	1 cut(s)	289
HspAI	GCGC	2 cut(s)	165, 289
Kzo9I	GATC	2 cut(s)	304, 310
LmnI	GCTCC	3 cut(s)	101, 316, 331
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	229, 274
MalI	GATC	2 cut(s)	306, 312
MbiI	CCGCTC	1 cut(s)	96
MboI	GATC	2 cut(s)	304, 310
MboII	GAAGA	1 cut(s)	197
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	2 cut(s)	143, 238
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	6 cut(s)	59, 109, 134, 151, 398, 408
MspI	CCGG	2 cut(s)	129, 420
MspR9I	CCNGG	2 cut(s)	129, 329
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	3 cut(s)	29, 167, 291
MwoI	GCNNNNNNNGC	2 cut(s)	26, 259
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	2 cut(s)	304, 310
NlaIII	CATG	1 cut(s)	289
NlaIV	GGNNCC	3 cut(s)	306, 318, 333
NmuCI	GTSAC	2 cut(s)	229, 274
PflMI	CCANNNNNTGG	1 cut(s)	328
PkrI	GCNGC	9 cut(s)	22, 25, 28, 92, 95, 134, 169, 255, 301
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Ppu21I	YACGTR	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	3 cut(s)	306, 318, 333
PspPI	GGNCC	1 cut(s)	417
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SatI	GCNGC	9 cut(s)	21, 24, 27, 91, 94, 133, 168, 254, 300
Sau3AI	GATC	2 cut(s)	304, 310
Sau96I	GGNCC	1 cut(s)	417
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	129, 329
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	4 cut(s)	119, 155, 276, 330
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	417
Sse9I	AATT	2 cut(s)	143, 238
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	127, 327
TaaI	ACNGT	4 cut(s)	76, 229, 280, 445
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	141, 147
TasI	AATT	2 cut(s)	143, 238
TauI	GCSGC	9 cut(s)	23, 26, 29, 93, 96, 135, 170, 256, 302
TscAI	CASTG	1 cut(s)	450
TseFI	GTSAC	2 cut(s)	229, 274
Tsp45I	GTSAC	2 cut(s)	229, 274
TspDTI	ATGAA	1 cut(s)	274
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	450
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	417
XapI	RAATTY	1 cut(s)	143
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.