Rorug04G0292400

Belongs to the Nudix hydrolase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
46606815 .. 46607595
781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0292400.1

Sequence Viewer

Length: 639 bp
ATGTTCACTGTTCCGCCGACTTCTCCTGATTGTGTTATCTTCGTTGTATCCGAAAGACGTGGAGTTGGATATTCTGGTGATTGGAGAACAATCTTCAACATAAATACTTTTAGTCTCAAAGATGGAAGATGGAGTACAATTCATACAACTGGTCCTAGTGCTGCTGATATTGGTGATTTGCGCGCTGCCTTCGATGCCGCAGTTAATCGGACTCGAAAGAACGATAATTACTTTCATAAATATAACCCTAGGTTTTACTGCTTGGTTGAGTCGACTGATGGGGAGCTGTTCTTAGCAATCAGGTCTACATGTTACAAGTATACTGCTATTAACCAAAGTTATTGGCAAGTTTATCGATTTGATCTGTCCGAATATGAATGGACTCGAATTAACAGCTTGGGAAATCAAGTATTGTTGATGAATGAGCAGGAATTTCGAGAGGATGGGTGTAAGCAGTGGTCGGCAATGGCAGTTCCAACAGTAGGAGAGGCTAGGAAATTTGCAAACATGATAGTTGTTCTTGAAGGGTATCGATGCTGGTGTTTTACCTGCAACACTGAAGGCAATTGGAGGTATCATGCAACTTTCCCCTTGGACAAGGAGAAAGGATACTACAGTTGGATTGAACGCCCAATGTGA

Protein Analysis

212

Amino Acids

24.78

Weight (kDa)

6.82

Isoelectric Point (pI)

32.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 6 - 142 9.4e-08 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000600)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68760
fragaria_vesca FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 557
AccI GTMKAC 3 cut(s) 272, 305, 320
AccII CGCG 1 cut(s) 183
AciI CCGC 2 cut(s) 14, 198
AcsI RAATTY 2 cut(s) 431, 497
AcuI CTGAAG 1 cut(s) 579
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 482
AflIII ACRYGT 1 cut(s) 308
AgsI TTSAA 3 cut(s) 97, 524, 626
AjiI CACGTC 1 cut(s) 59
AluBI AGCT 2 cut(s) 286, 396
AluI AGCT 2 cut(s) 286, 396
Alw26I GTCTC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 161, 185
ApoI RAATTY 2 cut(s) 431, 497
AspA2I CCTAGG 1 cut(s) 248
AspLEI GCGC 2 cut(s) 183, 185
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 89, 185
AvaII GGWCC 1 cut(s) 152
AvrII CCTAGG 1 cut(s) 248
BaeI ACNNNNGTAYC 2 cut(s) 601, 634
BarI GAAGNNNNNNTAC 2 cut(s) 118, 150
BbvI GCAGC 2 cut(s) 148, 172
BccI CCATC 4 cut(s) 116, 123, 272, 437
BcgI CGANNNNNNTGC 4 cut(s) 335, 369, 416, 450
BciVI GTATCC 2 cut(s) 58, 602
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 3 cut(s) 156, 249, 492
BfmI CTRYAG 1 cut(s) 613
BfuAI ACCTGC 1 cut(s) 557
BfuI GTATCC 2 cut(s) 58, 602
BisI GCNGC 3 cut(s) 162, 186, 198
BlnI CCTAGG 1 cut(s) 248
BlsI GCNGC 3 cut(s) 163, 187, 199
Bme18I GGWCC 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 152
BmsI GCATC 2 cut(s) 184, 524
Bsa29I ATCGAT 2 cut(s) 355, 532
BsaJI CCNNGG 2 cut(s) 248, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 482
Bse1I ACTGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 471
BseCI ATCGAT 2 cut(s) 355, 532
BseDI CCNNGG 2 cut(s) 248, 591
BseGI GGATG 1 cut(s) 448
BseLI CCNNNNNNNGG 1 cut(s) 482
BseMI GCAATG 1 cut(s) 471
BseNI ACTGG 1 cut(s) 154
BsePI GCGCGC 1 cut(s) 181
BseXI GCAGC 2 cut(s) 148, 172
Bsh1236I CGCG 1 cut(s) 183
BshVI ATCGAT 2 cut(s) 355, 532
BslI CCNNNNNNNGG 1 cut(s) 482
BsmAI GTCTC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 361
BspACI CCGC 2 cut(s) 14, 198
BspDI ATCGAT 2 cut(s) 355, 532
BspFNI CGCG 1 cut(s) 183
BspMI ACCTGC 1 cut(s) 557
BsrDI GCAATG 1 cut(s) 471
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 2 cut(s) 248, 591
BssHII GCGCGC 1 cut(s) 181
BssMI GATC 1 cut(s) 361
BssNAI GTATAC 1 cut(s) 321
BssT1I CCWWGG 2 cut(s) 248, 591
Bst1107I GTATAC 1 cut(s) 321
Bst4CI ACNGT 3 cut(s) 10, 481, 617
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 292
BstF5I GGATG 1 cut(s) 448
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 2 cut(s) 183, 185
BstKTI GATC 1 cut(s) 364
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 312
BstSFI CTRYAG 1 cut(s) 613
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 148, 172
BstZ17I GTATAC 1 cut(s) 321
Bsu15I ATCGAT 2 cut(s) 355, 532
BsuI GTATCC 2 cut(s) 58, 602
BsuTUI ATCGAT 2 cut(s) 355, 532
BtrI CACGTC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 448
BtsI GCAGTG 1 cut(s) 461
BtsIMutI CAGTG 3 cut(s) 6, 461, 555
BveI ACCTGC 1 cut(s) 557
Cac8I GCNNGC 1 cut(s) 183
CfoI GCGC 2 cut(s) 183, 185
Cfr13I GGNCC 1 cut(s) 152
ClaI ATCGAT 2 cut(s) 355, 532
Csp6I GTAC 1 cut(s) 135
CviAII CATG 3 cut(s) 309, 508, 578
CviJI RGCY 3 cut(s) 286, 396, 491
CviKI_1 RGCY 3 cut(s) 286, 396, 491
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 1 cut(s) 292
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 248, 591
Eco47I GGWCC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 579
EcoT14I CCWWGG 2 cut(s) 248, 591
ErhI CCWWGG 2 cut(s) 248, 591
FaeI CATG 3 cut(s) 312, 511, 581
FaiI YATR 9 cut(s) 101, 144, 237, 243, 310, 321, 375, 509, 579
FatI CATG 3 cut(s) 308, 507, 577
FblI GTMKAC 3 cut(s) 272, 305, 320
Fnu4HI GCNGC 3 cut(s) 162, 186, 198
FokI GGATG 1 cut(s) 455
Fsp4HI GCNGC 3 cut(s) 162, 186, 198
FspBI CTAG 3 cut(s) 156, 249, 492
GlaI GCGC 2 cut(s) 182, 184
GluI GCNGC 3 cut(s) 162, 186, 198
HhaI GCGC 2 cut(s) 183, 185
Hin1II CATG 3 cut(s) 312, 511, 581
Hin6I GCGC 2 cut(s) 181, 183
HinP1I GCGC 2 cut(s) 181, 183
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 3 cut(s) 211, 269, 382
HphI GGTGA 2 cut(s) 89, 185
Hpy166II GTNNAC 4 cut(s) 6, 273, 306, 321
Hpy188I TCNGA 3 cut(s) 52, 210, 370
Hpy188III TCNNGA 3 cut(s) 26, 437, 521
Hpy8I GTNNAC 4 cut(s) 6, 273, 306, 321
HpyAV CCTTC 3 cut(s) 199, 518, 554
HpyCH4III ACNGT 3 cut(s) 10, 481, 617
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 503, 552, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 292
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 3 cut(s) 312, 511, 581
HspAI GCGC 2 cut(s) 181, 183
Kzo9I GATC 1 cut(s) 361
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 7 cut(s) 39, 60, 135, 286, 413, 523, 562
Lsp1109I GCAGC 2 cut(s) 148, 172
LweI GCATC 2 cut(s) 184, 524
MaeI CTAG 3 cut(s) 156, 249, 492
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 311
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 3 cut(s) 31, 85, 138
MfeI CAATTG 1 cut(s) 565
MluCI AATT 6 cut(s) 138, 226, 387, 431, 497, 565
MlyI GAGTC 3 cut(s) 205, 278, 376
MmeI TCCRAC 3 cut(s) 46, 500, 599
MnlI CCTC 3 cut(s) 433, 481, 564
MseI TTAA 3 cut(s) 204, 330, 390
MunI CAATTG 1 cut(s) 565
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 1 cut(s) 361
NlaIII CATG 3 cut(s) 312, 511, 581
NspI RCATGY 1 cut(s) 312
PauI GCGCGC 1 cut(s) 181
PciI ACATGT 1 cut(s) 308
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PkrI GCNGC 3 cut(s) 163, 187, 199
PleI GAGTC 3 cut(s) 205, 277, 376
PpsI GAGTC 3 cut(s) 205, 277, 376
PscI ACATGT 1 cut(s) 308
PspPI GGNCC 1 cut(s) 152
PsrI GAACNNNNNNTAC 2 cut(s) 212, 244
PteI GCGCGC 1 cut(s) 181
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SalI GTCGAC 1 cut(s) 271
SaqAI TTAA 3 cut(s) 204, 330, 390
SatI GCNGC 3 cut(s) 162, 186, 198
Sau3AI GATC 1 cut(s) 361
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 3 cut(s) 205, 278, 376
SetI ASST 7 cut(s) 61, 254, 288, 305, 398, 551, 575
SfaNI GCATC 2 cut(s) 184, 524
SfcI CTRYAG 1 cut(s) 613
SinI GGWCC 1 cut(s) 152
Sse9I AATT 6 cut(s) 138, 226, 387, 431, 497, 565
SsiI CCGC 2 cut(s) 14, 198
SspMI CTAG 3 cut(s) 156, 249, 492
StyI CCWWGG 2 cut(s) 248, 591
TaaI ACNGT 3 cut(s) 10, 481, 617
TaiI ACGT 1 cut(s) 61
TaqI TCGA 7 cut(s) 192, 214, 272, 355, 385, 436, 532
TasI AATT 6 cut(s) 138, 226, 387, 431, 497, 565
TatI WGTACW 1 cut(s) 134
TauI GCSGC 1 cut(s) 200
Tru1I TTAA 3 cut(s) 204, 330, 390
Tru9I TTAA 3 cut(s) 204, 330, 390
TscAI CASTG 3 cut(s) 13, 461, 562
TseI GCWGC 2 cut(s) 161, 185
TspDTI ATGAA 4 cut(s) 131, 224, 390, 434
TspRI CASTG 3 cut(s) 13, 461, 562
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 2 cut(s) 431, 497
XceI RCATGY 1 cut(s) 312
XmaJI CCTAGG 1 cut(s) 248
XmiI GTMKAC 3 cut(s) 272, 305, 320
XspI CTAG 3 cut(s) 156, 249, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.