Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

59509296 .. 59510538

Gene Structure 1243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40452

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGTCAACGAGACGATGGTTGAAGCTGCGACGCCGGGCAAGGTGCCCAAAGTGGTAGTTGTGGTGTGCTTGTTGAGAGGGAACAAGGTGTTGTTGGGACGGCGCCGCTCATCTCTTGGTGATTCCATGTCCCTTCCTGGGGGACACCTCGAGTTTGGTGAGAGCTTTGATGAGTGTGCAACAAGAGAAGTGAAGGAAGAAACTGGTTTAGACATTGACAAGTTACAGTGTCTGACAGTCACAAACAACCTGTTCTTAGACAAAGCCAAACCATACCATTATGTGGTGATTTCTATCCGAGCAGTCTTGGCAGATCATCAACAGCCTCAGAATATTGAGCCAGACTTCTGTGATGGTTGCGGTTGGTATGAGTGGAACATCCTCCCCAAGCCACTCTTTTCGCCCTTGGAAAAAGCAATTCAGGCTGGATTTAATCCTTTCCTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

149

Amino Acids

16.62

Weight (kDa)

5.36

Isoelectric Point (pI)

59.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	18 - 133	5.7e-18	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	43, 102
AccB7I	CCANNNNNTGG	1 cut(s)	283
AccBSI	CCGCTC	1 cut(s)	108
AciI	CCGC	2 cut(s)	106, 360
AcyI	GRCGYC	2 cut(s)	32, 103
AfiI	CCNNNNNNNGG	3 cut(s)	138, 139, 283
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	2 cut(s)	26, 165
AluI	AGCT	2 cut(s)	26, 165
Alw26I	GTCTC	1 cut(s)	5
AlwNI	CAGNNNCTG	1 cut(s)	232
Ama87I	CYCGRG	1 cut(s)	149
ApeKI	GCWGC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	131, 170, 298
AvaI	CYCGRG	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	48
BanI	GGYRCC	2 cut(s)	43, 102
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	2 cut(s)	10, 347
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	5
BfoI	RGCGCY	1 cut(s)	106
BisI	GCNGC	2 cut(s)	27, 106
BlsI	GCNGC	2 cut(s)	28, 107
Bme1390I	CCNGG	2 cut(s)	36, 138
BmeT110I	CYCGRG	1 cut(s)	149
BmiI	GGNNCC	2 cut(s)	45, 104
BmrFI	CCNGG	2 cut(s)	36, 138
BpuMI	CCSGG	1 cut(s)	36
BsaBI	GATNNNNATC	1 cut(s)	293
BsaHI	GRCGYC	2 cut(s)	32, 103
BsaJI	CCNNGG	2 cut(s)	137, 405
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 139, 283
Bse1I	ACTGG	1 cut(s)	208
Bse8I	GATNNNNATC	1 cut(s)	293
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	137, 405
BseGI	GGATG	1 cut(s)	378
BseJI	GATNNNNATC	1 cut(s)	293
BseLI	CCNNNNNNNGG	3 cut(s)	138, 139, 283
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	1 cut(s)	208
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	13
BshNI	GGYRCC	2 cut(s)	43, 102
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	3 cut(s)	111, 115, 156
BslI	CCNNNNNNNGG	3 cut(s)	138, 139, 283
BsmAI	GTCTC	1 cut(s)	5
BsmBI	CGTCTC	1 cut(s)	5
BsmFI	GGGAC	3 cut(s)	111, 115, 156
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	2 cut(s)	106, 360
BspCNI	CTCAG	1 cut(s)	340
BspLI	GGNNCC	2 cut(s)	45, 104
BspT107I	GGYRCC	2 cut(s)	43, 102
BsrBI	CCGCTC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	137, 405
BssMI	GATC	1 cut(s)	313
BssNI	GRCGYC	2 cut(s)	32, 103
BssT1I	CCWWGG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	2 cut(s)	228, 238
BstACI	GRCGYC	2 cut(s)	32, 103
BstDEI	CTNAG	2 cut(s)	256, 327
BstF5I	GGATG	1 cut(s)	378
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 422
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	2 cut(s)	34, 136
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	233
CaiI	CAGNNNCTG	1 cut(s)	232
CfoI	GCGC	1 cut(s)	105
CseI	GACGC	1 cut(s)	40
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	7 cut(s)	26, 165, 266, 325, 340, 391, 425
CviKI_1	RGCY	7 cut(s)	26, 165, 266, 325, 340, 391, 425
DdeI	CTNAG	2 cut(s)	256, 327
DinI	GGCGCC	1 cut(s)	104
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	405
Eco88I	CYCGRG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	405
EgeI	GGCGCC	1 cut(s)	104
EheI	GGCGCC	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	405
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	1 cut(s)	130
FaiI	YATR	4 cut(s)	128, 274, 282, 369
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FaqI	GGGAC	3 cut(s)	111, 115, 156
FatI	CATG	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	27, 106
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	2 cut(s)	27, 106
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	2 cut(s)	27, 106
HaeII	RGCGCY	1 cut(s)	106
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	2 cut(s)	32, 103
Hin1II	CATG	1 cut(s)	130
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	3 cut(s)	131, 170, 298
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	3 cut(s)	234, 299, 330
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	143, 187
HpyCH4III	ACNGT	2 cut(s)	228, 238
HpyCH4V	TGCA	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 422
HpyF3I	CTNAG	2 cut(s)	256, 327
Hsp92I	GRCGYC	2 cut(s)	32, 103
Hsp92II	CATG	1 cut(s)	130
HspAI	GCGC	1 cut(s)	103
KasI	GGCGCC	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	313
LpnPI	CCDG	8 cut(s)	48, 123, 150, 189, 263, 354, 407, 411
Lsp1109I	GCAGC	1 cut(s)	13
MaeIII	GTNAC	2 cut(s)	222, 238
MalI	GATC	1 cut(s)	315
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	1 cut(s)	313
MboII	GAAGA	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	417
Mly113I	GGCGCC	1 cut(s)	103
MnlI	CCTC	4 cut(s)	71, 158, 336, 392
MseI	TTAA	2 cut(s)	432, 448
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	2 cut(s)	36, 138
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	308, 422
NarI	GGCGCC	1 cut(s)	103
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	2 cut(s)	45, 104
NmuCI	GTSAC	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	28, 107
PluTI	GGCGCC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	2 cut(s)	45, 104
PspXI	VCTCGAGB	1 cut(s)	149
PstNI	CAGNNNCTG	1 cut(s)	232
SaqAI	TTAA	2 cut(s)	432, 448
SatI	GCNGC	2 cut(s)	27, 106
Sau3AI	GATC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	36, 138
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	6 cut(s)	28, 45, 90, 150, 167, 252
SfoI	GGCGCC	1 cut(s)	104
Sfr274I	CTCGAG	1 cut(s)	149
SlaI	CTCGAG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	417
SsiI	CCGC	2 cut(s)	106, 360
SspDI	GGCGCC	1 cut(s)	102
SspI	AATATT	1 cut(s)	334
StyD4I	CCNGG	2 cut(s)	34, 136
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	2 cut(s)	228, 238
TaqI	TCGA	1 cut(s)	150
TasI	AATT	1 cut(s)	417
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	2 cut(s)	432, 448
Tru9I	TTAA	2 cut(s)	432, 448
TscAI	CASTG	1 cut(s)	233
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	238
TspRI	CASTG	1 cut(s)	233
Van91I	CCANNNNNTGG	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.