Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Forward (+)

8171172 .. 8171745

Gene Structure 574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006530

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAAAACGGCGCGTCGTCTCGGGTTCCCAGAGTAGGTGTGGTGGTGTTTCTTCTCAGAGGGAAAACTGTGCTTCTAGGACGACGTCGTTCCTCCATCGGCGACTCCACCTTTGCTCTCCCCGGCGGCCACCTCGAGTTCGGTGAGGGTTTTGAGGAGTGTGCGGCGAGAGAATTGAAGGAAGAGACGGGTCTGGACCTCGACAAGATCGAATTTGTGACCGTGACGAACAACTTGTTCTTGGACGAACCCAAACCGGCGCATTACGTGACGATCTTTATGCGAGCGGTTCTGAAAGATCCCGATCAAGTTCCCCAGACTGTTGAGCCGGACAAGTGTGACGGTTGGGGTTGGTACGAGTGGGACGACCTCCCCAAACCACTGTTTTGGCCTTTGGAGAAGATGGTGCAGAGTGGGTTTAGTCCTTTTCCAATTCCGGATTCCAATTCAGGGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

153

Amino Acids

17.04

Weight (kDa)

4.76

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	10 - 135	2.1e-22	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	287
AccII	CGCG	1 cut(s)	14
AccIII	TCCGGA	1 cut(s)	436
AciI	CCGC	3 cut(s)	126, 164, 287
AclWI	GGATC	1 cut(s)	293
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	212
AcyI	GRCGYC	1 cut(s)	85
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	2 cut(s)	35, 450
AgsI	TTSAA	1 cut(s)	178
AjuI	GAANNNNNNNTTGG	2 cut(s)	424, 456
Alw26I	GTCTC	2 cut(s)	24, 179
AlwI	GGATC	1 cut(s)	293
Ama87I	CYCGRG	2 cut(s)	21, 134
Aor13HI	TCCGGA	1 cut(s)	436
AoxI	GGCC	2 cut(s)	127, 389
ApoI	RAATTY	1 cut(s)	212
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspLEI	GCGC	2 cut(s)	14, 262
AspS9I	GGNCC	1 cut(s)	196
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	155
AvaI	CYCGRG	2 cut(s)	21, 134
AvaII	GGWCC	1 cut(s)	196
BccI	CCATC	2 cut(s)	104, 397
BceAI	ACGGC	1 cut(s)	25
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	24, 179
BfaI	CTAG	1 cut(s)	77
BisI	GCNGC	2 cut(s)	127, 165
BlsI	GCNGC	2 cut(s)	128, 166
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	196
BmeT110I	CYCGRG	2 cut(s)	21, 134
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	268
BsaBI	GATNNNNATC	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	121
BsaWI	WCCGGW	1 cut(s)	436
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 450
Bse118I	RCCGGY	1 cut(s)	256
Bse8I	GATNNNNATC	1 cut(s)	303
BseAI	TCCGGA	1 cut(s)	436
BseDI	CCNNGG	1 cut(s)	121
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	35, 450
BseMII	CTCAG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	129, 391
BsiHKCI	CYCGRG	2 cut(s)	21, 134
BsiSI	CCGG	4 cut(s)	123, 257, 329, 437
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	35, 450
BsmAI	GTCTC	2 cut(s)	24, 179
BsmBI	CGTCTC	2 cut(s)	24, 179
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	129, 391
BsoBI	CYCGRG	2 cut(s)	21, 134
Bsp13I	TCCGGA	1 cut(s)	436
Bsp143I	GATC	4 cut(s)	207, 273, 298, 304
BspACI	CCGC	3 cut(s)	126, 164, 287
BspANI	GGCC	2 cut(s)	129, 391
BspCNI	CTCAG	1 cut(s)	69
BspEI	TCCGGA	1 cut(s)	436
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	1 cut(s)	293
BsrBI	CCGCTC	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	256
BssAI	RCCGGY	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	4 cut(s)	207, 273, 298, 304
BssNI	GRCGYC	1 cut(s)	85
Bst4CI	ACNGT	5 cut(s)	70, 223, 322, 344, 384
Bst6I	CTCTTC	1 cut(s)	177
BstACI	GRCGYC	1 cut(s)	85
BstBAI	YACGTR	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	56
BstFNI	CGCG	1 cut(s)	14
BstHHI	GCGC	2 cut(s)	14, 262
BstKTI	GATC	4 cut(s)	210, 276, 301, 307
BstMAI	GTCTC	2 cut(s)	24, 179
BstMBI	GATC	4 cut(s)	207, 273, 298, 304
BstSCI	CCNGG	1 cut(s)	121
BstUI	CGCG	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	298
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	129, 391
BtsIMutI	CAGTG	1 cut(s)	380
Cac8I	GCNNGC	1 cut(s)	285
CfoI	GCGC	2 cut(s)	14, 262
Cfr10I	RCCGGY	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	196
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	1 cut(s)	355
CviJI	RGCY	3 cut(s)	129, 328, 391
CviKI_1	RGCY	3 cut(s)	129, 328, 391
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	4 cut(s)	209, 275, 300, 306
DpnII	GATC	4 cut(s)	207, 273, 298, 304
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	196
Eco88I	CYCGRG	2 cut(s)	21, 134
Esp3I	CGTCTC	2 cut(s)	24, 179
FaiI	YATR	1 cut(s)	281
FaqI	GGGAC	1 cut(s)	377
Fnu4HI	GCNGC	2 cut(s)	127, 165
Fsp4HI	GCNGC	2 cut(s)	127, 165
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	2 cut(s)	13, 261
GluI	GCNGC	2 cut(s)	127, 165
HaeIII	GGCC	2 cut(s)	129, 391
HapII	CCGG	4 cut(s)	123, 257, 329, 437
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	2 cut(s)	14, 262
Hin1I	GRCGYC	1 cut(s)	85
Hin6I	GCGC	2 cut(s)	12, 260
HinP1I	GCGC	2 cut(s)	12, 260
HinfI	GANTC	2 cut(s)	104, 440
HpaII	CCGG	4 cut(s)	123, 257, 329, 437
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	2 cut(s)	59, 294
Hpy188III	TCNNGA	3 cut(s)	194, 302, 437
Hpy99I	CGWCG	3 cut(s)	19, 87, 90
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	5 cut(s)	70, 223, 322, 344, 384
HpyCH4IV	ACGT	2 cut(s)	85, 267
HpyCH4V	TGCA	1 cut(s)	409
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	2 cut(s)	85, 267
Hsp92I	GRCGYC	1 cut(s)	85
HspAI	GCGC	2 cut(s)	12, 260
Kpn2I	TCCGGA	1 cut(s)	436
Kzo9I	GATC	4 cut(s)	207, 273, 298, 304
LpnPI	CCDG	8 cut(s)	43, 136, 179, 270, 329, 342, 435, 450
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	2 cut(s)	85, 267
MaeIII	GTNAC	4 cut(s)	217, 223, 268, 338
MalI	GATC	4 cut(s)	209, 275, 300, 306
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	4 cut(s)	207, 273, 298, 304
MboII	GAAGA	3 cut(s)	44, 194, 412
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	4 cut(s)	173, 212, 432, 445
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	7 cut(s)	53, 103, 139, 143, 148, 209, 380
MroI	TCCGGA	1 cut(s)	436
MspI	CCGG	4 cut(s)	123, 257, 329, 437
MspR9I	CCNGG	1 cut(s)	123
MvnI	CGCG	1 cut(s)	14
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	4 cut(s)	207, 273, 298, 304
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	4 cut(s)	217, 223, 268, 338
PaeR7I	CTCGAG	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 363
PfeI	GAWTC	1 cut(s)	440
PflFI	GACNNNGTC	1 cut(s)	84
PkrI	GCNGC	2 cut(s)	128, 166
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	196
PspXI	VCTCGAGB	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	298
PsyI	GACNNNGTC	1 cut(s)	84
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SatI	GCNGC	2 cut(s)	127, 165
Sau3AI	GATC	4 cut(s)	207, 273, 298, 304
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	7 cut(s)	40, 88, 113, 135, 201, 270, 372
Sfr274I	CTCGAG	1 cut(s)	134
SinI	GGWCC	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	4 cut(s)	173, 212, 432, 445
SsiI	CCGC	3 cut(s)	126, 164, 287
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	5 cut(s)	70, 223, 322, 344, 384
TaiI	ACGT	2 cut(s)	88, 270
TaqI	TCGA	3 cut(s)	135, 201, 210
TasI	AATT	4 cut(s)	173, 212, 432, 445
TauI	GCSGC	2 cut(s)	129, 167
TfiI	GAWTC	1 cut(s)	440
TscAI	CASTG	1 cut(s)	387
TseFI	GTSAC	4 cut(s)	217, 223, 268, 338
Tsp45I	GTSAC	4 cut(s)	217, 223, 268, 338
TspRI	CASTG	1 cut(s)	387
Tth111I	GACNNNGTC	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	1 cut(s)	212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	134
XspI	CTAG	1 cut(s)	77
ZraI	GACGTC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.