Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

2934165 .. 2934899

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g04330.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTCCTGGCGTCAGGTCAGGTGCGTTGCGTACAAGAACAGAAACAAAATGGAAAACGGGACTACAGCCGCCGCCGCGAAGCCTAGAGTAGCGGTGGTGGTGTTTTTGCTGAGAGGCAAAACGGTGCTGTTGGGACGCCGCCGCTCCTCCGTCGGCGACTCTACCTTCGCCCTTCCCGGCGGCCATCTCGAATTCGGAGAGAGCTTTGAGGAGTGTGCGGCGAGAGAACTGAAGGAAGAAACTGGGCTGGACATTGAGAAGGAGAAGATGGAGTTGCTGACGGTCACGAACAATTTGTTCTTAGAGCCGCCGAAGCCGTCGCATTACGTGACGGTTTTCATGCGCGGAGTGGCGGCGGATCCAGATCAGGAGCCCCAAAACCTGGAGCCAAACAAGTGCGATGGTTGGGAGTGGTACGAGTGGGACAACCTCCCAAATCCCCTCTTTTGGCCTCTGGAGAAAATGGTCAGGACCGGATTTAGTCCTTTTCCCAAAACAGTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

169

Amino Acids

19.16

Weight (kDa)

5.83

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccBSI	CCGCTC	1 cut(s)	144
AccII	CGCG	2 cut(s)	77, 345
AclWI	GGATC	2 cut(s)	353, 366
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	251
AcyI	GRCGYC	2 cut(s)	10, 136
AfaI	GTAC	2 cut(s)	32, 416
AfiI	CCNNNNNNNGG	2 cut(s)	382, 447
AjnI	CCWGG	2 cut(s)	5, 381
AluBI	AGCT	1 cut(s)	204
AluI	AGCT	1 cut(s)	204
AlwI	GGATC	2 cut(s)	353, 366
AoxI	GGCC	2 cut(s)	181, 449
ApoI	RAATTY	1 cut(s)	191
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	471
AsuC2I	CCSGG	1 cut(s)	177
AvaII	GGWCC	1 cut(s)	471
BamHI	GGATCC	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	375
BccI	CCATC	3 cut(s)	192, 262, 395
BceAI	ACGGC	1 cut(s)	301
BciT130I	CCWGG	2 cut(s)	7, 383
BcnI	CCSGG	1 cut(s)	177
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	63
BisI	GCNGC	9 cut(s)	69, 72, 75, 139, 142, 181, 219, 308, 354
BlsI	GCNGC	9 cut(s)	70, 73, 76, 140, 143, 182, 220, 309, 355
Bme1390I	CCNGG	3 cut(s)	7, 177, 383
Bme18I	GGWCC	1 cut(s)	471
BmgT120I	GGNCC	1 cut(s)	471
BmiI	GGNNCC	3 cut(s)	360, 372, 387
BmrFI	CCNGG	3 cut(s)	7, 177, 383
BmrI	ACTGGG	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	252
BpmI	CTGGAG	2 cut(s)	404, 476
BpuMI	CCSGG	1 cut(s)	177
BsaAI	YACGTR	1 cut(s)	328
BsaBI	GATNNNNATC	1 cut(s)	363
BsaHI	GRCGYC	2 cut(s)	10, 136
BsaWI	WCCGGW	1 cut(s)	473
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 447
Bse1I	ACTGG	1 cut(s)	247
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	7, 383
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	2 cut(s)	382, 447
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	2 cut(s)	136, 224
Bsh1236I	CGCG	2 cut(s)	77, 345
BshFI	GGCC	2 cut(s)	183, 451
BsiSI	CCGG	2 cut(s)	177, 474
BslFI	GGGAC	3 cut(s)	73, 147, 437
BslI	CCNNNNNNNGG	2 cut(s)	382, 447
BsmFI	GGGAC	3 cut(s)	73, 147, 437
BsnI	GGCC	2 cut(s)	183, 451
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	2 cut(s)	358, 364
BspANI	GGCC	2 cut(s)	183, 451
BspCNI	CTCAG	1 cut(s)	102
BspFNI	CGCG	2 cut(s)	77, 345
BspLI	GGNNCC	3 cut(s)	360, 372, 387
BspPI	GGATC	2 cut(s)	353, 366
BsrBI	CCGCTC	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	247
BssMI	GATC	2 cut(s)	358, 364
BssNI	GRCGYC	2 cut(s)	10, 136
Bst2UI	CCWGG	2 cut(s)	7, 383
Bst4CI	ACNGT	4 cut(s)	124, 283, 334, 499
BstACI	GRCGYC	2 cut(s)	10, 136
BstBAI	YACGTR	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	110, 301
BstFNI	CGCG	2 cut(s)	77, 345
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	2 cut(s)	361, 367
BstMBI	GATC	2 cut(s)	358, 364
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 313
BstNI	CCWGG	2 cut(s)	7, 383
BstSCI	CCNGG	3 cut(s)	5, 175, 381
BstSFI	CTRYAG	1 cut(s)	63
BstUI	CGCG	2 cut(s)	77, 345
BstX2I	RGATCY	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	2 cut(s)	183, 451
BtgZI	GCGATG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	504
CfoI	GCGC	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	471
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	31, 415
CviAII	CATG	1 cut(s)	340
CviQI	GTAC	2 cut(s)	31, 415
DdeI	CTNAG	2 cut(s)	110, 301
DpnI	GATC	2 cut(s)	360, 366
DpnII	GATC	2 cut(s)	358, 364
EaeI	YGGCCR	1 cut(s)	181
EciI	GGCGGA	1 cut(s)	371
Eco24I	GRGCYC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	471
Eco57I	CTGAAG	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	191
EcoRII	CCWGG	2 cut(s)	5, 381
EcoT38I	GRGCYC	1 cut(s)	375
FaeI	CATG	1 cut(s)	343
FaiI	YATR	1 cut(s)	341
FaqI	GGGAC	3 cut(s)	73, 147, 437
FatI	CATG	1 cut(s)	339
Fnu4HI	GCNGC	9 cut(s)	69, 72, 75, 139, 142, 181, 219, 308, 354
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	9 cut(s)	69, 72, 75, 139, 142, 181, 219, 308, 354
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	9 cut(s)	69, 72, 75, 139, 142, 181, 219, 308, 354
GsuI	CTGGAG	2 cut(s)	404, 476
HaeIII	GGCC	2 cut(s)	183, 451
HapII	CCGG	2 cut(s)	177, 474
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	1 cut(s)	345
Hin1I	GRCGYC	2 cut(s)	10, 136
Hin1II	CATG	1 cut(s)	343
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	2 cut(s)	177, 474
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	6 cut(s)	188, 286, 362, 368, 455, 469
Hpy99I	CGWCG	2 cut(s)	155, 322
HpyAV	CCTTC	4 cut(s)	175, 182, 226, 253
HpyCH4III	ACNGT	4 cut(s)	124, 283, 334, 499
HpyCH4IV	ACGT	1 cut(s)	327
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 313
HpyF3I	CTNAG	2 cut(s)	110, 301
HpySE526I	ACGT	1 cut(s)	327
Hsp92I	GRCGYC	2 cut(s)	10, 136
Hsp92II	CATG	1 cut(s)	343
HspAI	GCGC	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	358, 364
LmnI	GCTCC	3 cut(s)	149, 370, 385
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	283, 328
MalI	GATC	2 cut(s)	360, 366
MbiI	CCGCTC	1 cut(s)	144
MboI	GATC	2 cut(s)	358, 364
MboII	GAAGA	2 cut(s)	248, 277
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	2 cut(s)	191, 292
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	6 cut(s)	107, 157, 202, 440, 452, 462
MspI	CCGG	2 cut(s)	177, 474
MspR9I	CCNGG	3 cut(s)	7, 177, 383
MvaI	CCWGG	2 cut(s)	7, 383
MvnI	CGCG	2 cut(s)	77, 345
MwoI	GCNNNNNNNGC	2 cut(s)	74, 313
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	358, 364
NlaIII	CATG	1 cut(s)	343
NlaIV	GGNNCC	3 cut(s)	360, 372, 387
NmuCI	GTSAC	2 cut(s)	283, 328
PflMI	CCANNNNNTGG	1 cut(s)	382
PkrI	GCNGC	9 cut(s)	70, 73, 76, 140, 143, 182, 220, 309, 355
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
Ppu21I	YACGTR	1 cut(s)	328
Psp6I	CCWGG	2 cut(s)	5, 381
PspGI	CCWGG	2 cut(s)	5, 381
PspN4I	GGNNCC	3 cut(s)	360, 372, 387
PspPI	GGNCC	1 cut(s)	471
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	2 cut(s)	32, 416
RsaNI	GTAC	2 cut(s)	31, 415
SatI	GCNGC	9 cut(s)	69, 72, 75, 139, 142, 181, 219, 308, 354
Sau3AI	GATC	2 cut(s)	358, 364
Sau96I	GGNCC	1 cut(s)	471
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	3 cut(s)	7, 177, 383
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	7 cut(s)	18, 23, 167, 206, 330, 384, 432
SfcI	CTRYAG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	471
Sse9I	AATT	2 cut(s)	191, 292
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	3 cut(s)	5, 175, 381
TaaI	ACNGT	4 cut(s)	124, 283, 334, 499
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	1 cut(s)	189
TasI	AATT	2 cut(s)	191, 292
TauI	GCSGC	9 cut(s)	71, 74, 77, 141, 144, 183, 221, 310, 356
TscAI	CASTG	1 cut(s)	504
TseFI	GTSAC	2 cut(s)	283, 328
Tsp45I	GTSAC	2 cut(s)	283, 328
TspDTI	ATGAA	1 cut(s)	328
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	1 cut(s)	504
Van91I	CCANNNNNTGG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	471
XapI	RAATTY	1 cut(s)	191
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.