Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

46590660 .. 46595702

Gene Structure 5043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0292300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2187 bp

ATGGCTCGGAAGGCTAATCAACAGAAGAATGGGGTTGATCGGCAGACGTCAAAGCAAAAGAAGAAGGCTTCGGAGTCACCAGCAGAAACGAAAGCAAGTGAGGTGAAAGTTTTCCCTGGAGAAGAAATCTCAAATGGTGACCAGCCAAGCAGTCCTCTTTCAGCAGGTGTGGGTAAAACCAATCATGCTGGAGATGAGAATAAAAGCAAGCAAAAACCTGGCAAGGTTTTGAGGAAAGAGAATCAAGGGACGGATCCAATGCCGGGTCAAGGGCAGTCGACGTCTTCAGGAAGTGATTCAGGAAATTGCAACGGAAATAATGAAGCTCCAAGCGTAAGAGAGCATAGTGGGCCGTTACCCCATAGTGAAATACGTCGCAAACATGCAAAAAGAAAATCAGGTTACTCACTGAATCGGCATGTAAAAAATCTGATGGCGAAGATAGAGTCTTCAGATAGCGTATTGGTTAGAAATTTGAGGGCATCAACATTGTCCTTCTTGAAAGTGGCTAATGAATGGCTGCAGAGGCACAAACCAATGATTCTGACTGTAACAAGTAAAGTACAGAATGGTCGTGATTATGTCCAAACAAAGGTTGATCAGGCATATCCTATAGTTAAGAAGTGGCTTACGCAGCTTTGGAGTGTGCTGTTTATTATATCAATGCTTTGGTTCAATTTTACCTTAAGGGGTATTGATTCCTTCGTACGCATGGGGACAACATCCTTGTTTTCAGTGATATGGTTCAGCATTCTCTCAGTAGTTTCTATGGTTGGGATGTTTAAATTCCTGATTGTCTTGGTCTCAGCAGCTTTAATTGGAGTTTTCATTGGGTTCATGCTTGCAATTTTATTGGTTGCTCTTTCTGGAGCTCTTTTCTTGTGGCTTTATGGAAGCTTTTGGACAACATTACTTGTAATCTTCTTTGGAGGTTTGGCATTCACTCTGAGCCATGAGCGGGTTGCACTGTTAATTGCAACTGTGTATTCCATGTATTGTGCCTGGACGTATGTTGGATGGCTGGGTGTGCTCTTGGGGTTAAATTTATCTTTTATCTCAAGTGAGTGTCTAATATATTTCTTAAAGAACAACGTAAATCAGAATACAAGACCTACCGGATCCCCTGAACAAACGTCTGGAATGCACGATCAACAAGGCTTCTTCAATGGTGAGCATGTGCATTCCTCATCCTCAGAAAATGGCCCATGGTTTTCTGCTGATCGTAGCCCTGGAGTGCCTTCAACCAGTGGGGCTGATTCTGAGTTAACTTCTGAAGATGAAATTGTTCGGCTGCTAAATTGTACTGACCACTATTCAGTGCTGGGATTCTCCCGCTATGAAGACGTAGATATTTCTTTACTGAAGCGAGAGTATAAGAAAAAGGCAATGTTGGTCCATCCTGATAAGAATATGGGAAATGAAAAGGCTGCTGAAGCTTTCAAGAAACTACAGAATGCATATGAGGTTTTACTTGATTCCTTGAAGCGAAAAGCATATGATGACGAATTAAGGAGCCAGGAACTGCTGAACATTTTCCGTAGGTTTAAAAGTGCTTCACAAAAGAATGGAGGAAACGGTTTCTTCCCCTCTGGATTTGGAAGCCCAGAGGCTGATGGTGAGGACCCATTTGGAGAGTCAAGGCAAATCGCCTGCAATAAGTGCAACAACTTTCATACCTGGTCACTCACCAGAAAATCAAAATCTAGAGCAAGATGGTGCCAGGATTGCAAAGATTTTCATCAAGCGAAAGATGGTGATGGATGGGTTGAACAATCTTCACAACCTTTCTTCTTTGGATTATTGCAGAAGGTAGATACTCCATCTGCATTTGTCTGTGCAGATAGCAAGATATATAATGCTAGCGAGTGGTATATTTGTCAGGGAATGAGATGTCCAGCCAACACACACAAACCTAGTTTTCATGTGAACACTAGTGTGACCTCTACGAAGCACAATTCTGGAAAGGGAACAAATTCAGGACAAAGAGGCGGGCGGATGCCAGCATCTGTTGAAGAGTGCATGACAGAGGAAGAATTTGTTGAGTGGCTACAAAATGCAATGCAAACAGGCATGTATGAGAATTTTAGTGCCGGCACCTCCACTGAGAGCCCTTCTGCCAAATCTGGAAATGGTACCAAGACTAGTGGCAGTGCTAACAAGAGAAAGAAAAAGGGAAAGAAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

728

Amino Acids

80.8

Weight (kDa)

9.29

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	436 - 500	1.6e-17	DnaJ domain
Jiv90	PF14901	545 - 643	1.3e-36	Cleavage inducing molecular chaperone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	155
AatII	GACGTC	2 cut(s)	50, 284
Acc36I	ACCTGC	1 cut(s)	155
Acc65I	GGTACC	1 cut(s)	2132
AccB1I	GGYRCC	3 cut(s)	1716, 2093, 2132
AccBSI	CCGCTC	1 cut(s)	958
AccI	GTMKAC	1 cut(s)	278
AciI	CCGC	4 cut(s)	958, 1333, 1989, 1993
AclWI	GGATC	4 cut(s)	248, 261, 1113, 1126
AcsI	RAATTY	6 cut(s)	472, 785, 1042, 1972, 2033, 2080
AcuI	CTGAAG	5 cut(s)	270, 435, 1293, 1382, 1452
AcyI	GRCGYC	2 cut(s)	47, 281
AfaI	GTAC	4 cut(s)	564, 708, 1303, 2134
AfiI	CCNNNNNNNGG	4 cut(s)	263, 269, 592, 958
AflII	CTTAAG	1 cut(s)	685
AgsI	TTSAA	8 cut(s)	502, 676, 1165, 1242, 1441, 1483, 1769, 2012
AhlI	ACTAGT	2 cut(s)	1931, 2141
AjnI	CCWGG	7 cut(s)	115, 217, 1001, 1228, 1515, 1676, 1719
AleI	CACNNNNGTG	1 cut(s)	1934
AluBI	AGCT	6 cut(s)	326, 637, 812, 872, 897, 1436
AluI	AGCT	6 cut(s)	326, 637, 812, 872, 897, 1436
Alw21I	GWGCWC	2 cut(s)	874, 1032
Alw26I	GTCTC	1 cut(s)	808
AlwI	GGATC	4 cut(s)	248, 261, 1113, 1126
AlwNI	CAGNNNCTG	3 cut(s)	1522, 1610, 2006
AoxI	GGCC	2 cut(s)	350, 1201
ApeKI	GCWGC	5 cut(s)	520, 634, 809, 1291, 1427
ApoI	RAATTY	6 cut(s)	472, 785, 1042, 1972, 2033, 2080
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
Asp700I	GAANNNNTTC	5 cut(s)	110, 295, 1284, 1532, 1972
Asp718I	GGTACC	1 cut(s)	2132
AspS9I	GGNCC	4 cut(s)	350, 1202, 1393, 1621
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	7 cut(s)	69, 115, 149, 1181, 1628, 1678, 1766
AsuNHI	GCTAGC	1 cut(s)	1859
AvaII	GGWCC	2 cut(s)	1393, 1621
BamHI	GGATCC	2 cut(s)	253, 1118
BanI	GGYRCC	3 cut(s)	1716, 2093, 2132
BanII	GRGCYC	2 cut(s)	874, 2111
BbsI	GAAGAC	3 cut(s)	276, 441, 1347
Bbv12I	GWGCWC	2 cut(s)	874, 1032
BbvI	GCAGC	5 cut(s)	507, 646, 821, 1278, 1414
BccI	CCATC	9 cut(s)	427, 1011, 1404, 1607, 1707, 1745, 1751, 1755, 1828
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	7 cut(s)	117, 219, 1003, 1230, 1517, 1678, 1721
BclI	TGATCA	1 cut(s)	598
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	808
BcuI	ACTAGT	2 cut(s)	1931, 2141
BfaI	CTAG	5 cut(s)	1704, 1860, 1914, 1932, 2142
BfmI	CTRYAG	3 cut(s)	521, 612, 1448
BfrI	CTTAAG	1 cut(s)	685
BfuAI	ACCTGC	1 cut(s)	155
BisI	GCNGC	5 cut(s)	521, 635, 810, 1292, 1428
BlsI	GCNGC	5 cut(s)	522, 636, 811, 1293, 1429
Bme1390I	CCNGG	8 cut(s)	117, 219, 264, 1003, 1230, 1517, 1678, 1721
Bme18I	GGWCC	2 cut(s)	1393, 1621
BmgT120I	GGNCC	4 cut(s)	350, 1202, 1393, 1621
BmiI	GGNNCC	7 cut(s)	255, 1120, 1514, 1623, 1718, 2095, 2134
BmrFI	CCNGG	8 cut(s)	117, 219, 264, 1003, 1230, 1517, 1678, 1721
BmsI	GCATC	3 cut(s)	491, 1986, 2012
BmtI	GCTAGC	1 cut(s)	1863
BpiI	GAAGAC	3 cut(s)	276, 441, 1347
BpmI	CTGGAG	4 cut(s)	138, 210, 888, 1251
BpuEI	CTTGAG	1 cut(s)	1042
BpuMI	CCSGG	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	1737
BsaHI	GRCGYC	2 cut(s)	47, 281
BsaI	GGTCTC	1 cut(s)	808
BsaJI	CCNNGG	3 cut(s)	115, 1205, 1228
BsaWI	WCCGGW	1 cut(s)	1115
Bsc4I	CCNNNNNNNGG	4 cut(s)	263, 269, 592, 958
Bse118I	RCCGGY	1 cut(s)	2090
Bse1I	ACTGG	1 cut(s)	1245
Bse3DI	GCAATG	2 cut(s)	1392, 2064
Bse8I	GATNNNNATC	1 cut(s)	1737
BseBI	CCWGG	7 cut(s)	117, 219, 1003, 1230, 1517, 1678, 1721
BseDI	CCNNGG	3 cut(s)	115, 1205, 1228
BseGI	GGATG	7 cut(s)	722, 783, 1022, 1187, 1396, 1766, 2001
BseJI	GATNNNNATC	1 cut(s)	1737
BseLI	CCNNNNNNNGG	4 cut(s)	263, 269, 592, 958
BseMI	GCAATG	2 cut(s)	1392, 2064
BseMII	CTCAG	6 cut(s)	771, 819, 938, 1206, 1251, 2094
BseNI	ACTGG	1 cut(s)	1245
BseXI	GCAGC	5 cut(s)	507, 646, 821, 1278, 1414
BseYI	CCCAGC	2 cut(s)	1021, 1321
BsgI	GTGCAG	1 cut(s)	1857
BshFI	GGCC	2 cut(s)	352, 1203
BshNI	GGYRCC	3 cut(s)	1716, 2093, 2132
BsiHKAI	GWGCWC	2 cut(s)	874, 1032
BsiSI	CCGG	3 cut(s)	263, 1116, 2091
BsiWI	CGTACG	1 cut(s)	706
BslFI	GGGAC	2 cut(s)	262, 730
BslI	CCNNNNNNNGG	4 cut(s)	263, 269, 592, 958
BsmAI	GTCTC	1 cut(s)	808
BsmFI	GGGAC	2 cut(s)	262, 730
BsmI	GAATGC	5 cut(s)	750, 938, 1146, 1180, 1459
BsnI	GGCC	2 cut(s)	352, 1203
Bso31I	GGTCTC	1 cut(s)	808
Bsp1286I	GDGCHC	3 cut(s)	874, 1032, 2111
Bsp143I	GATC	6 cut(s)	37, 253, 598, 1118, 1147, 1219
Bsp19I	CCATGG	1 cut(s)	1205
BspACI	CCGC	4 cut(s)	958, 1333, 1989, 1993
BspANI	GGCC	2 cut(s)	352, 1203
BspCNI	CTCAG	6 cut(s)	770, 818, 939, 1205, 1252, 2095
BspLI	GGNNCC	7 cut(s)	255, 1120, 1514, 1623, 1718, 2095, 2134
BspMAI	CTGCAG	1 cut(s)	525
BspMI	ACCTGC	1 cut(s)	155
BspOI	GCTAGC	1 cut(s)	1863
BspPI	GGATC	4 cut(s)	248, 261, 1113, 1126
BspT107I	GGYRCC	3 cut(s)	1716, 2093, 2132
BspTI	CTTAAG	1 cut(s)	685
BspTNI	GGTCTC	1 cut(s)	808
BsrBI	CCGCTC	1 cut(s)	958
BsrDI	GCAATG	2 cut(s)	1392, 2064
BsrFI	RCCGGY	1 cut(s)	2090
BsrI	ACTGG	1 cut(s)	1245
BssAI	RCCGGY	1 cut(s)	2090
BssECI	CCNNGG	3 cut(s)	115, 1205, 1228
BssMI	GATC	6 cut(s)	37, 253, 598, 1118, 1147, 1219
BssNI	GRCGYC	2 cut(s)	47, 281
BssT1I	CCWWGG	1 cut(s)	1205
Bst2UI	CCWGG	7 cut(s)	117, 219, 1003, 1230, 1517, 1678, 1721
Bst4CI	ACNGT	4 cut(s)	550, 969, 982, 1577
Bst6I	CTCTTC	1 cut(s)	2007
BstACI	GRCGYC	2 cut(s)	47, 281
BstAFI	CTTAAG	1 cut(s)	685
BstAPI	GCANNNNNTGC	1 cut(s)	1659
BstC8I	GCNNGC	7 cut(s)	209, 843, 1651, 1861, 1991, 2001, 2092
BstDEI	CTNAG	6 cut(s)	757, 805, 947, 1192, 1260, 2103
BstDSI	CCRYGG	1 cut(s)	1205
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	7 cut(s)	722, 783, 1022, 1187, 1396, 1766, 2001
BstKTI	GATC	6 cut(s)	40, 256, 601, 1121, 1150, 1222
BstMAI	GTCTC	1 cut(s)	808
BstMBI	GATC	6 cut(s)	37, 253, 598, 1118, 1147, 1219
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 349, 526, 634, 1027, 1433, 1659, 1725
BstNI	CCWGG	7 cut(s)	117, 219, 1003, 1230, 1517, 1678, 1721
BstNSI	RCATGY	4 cut(s)	386, 422, 1178, 2074
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	8 cut(s)	115, 217, 262, 1001, 1228, 1515, 1676, 1719
BstSFI	CTRYAG	3 cut(s)	521, 612, 1448
BstV1I	GCAGC	5 cut(s)	507, 646, 821, 1278, 1414
BstV2I	GAAGAC	3 cut(s)	276, 441, 1347
BstX2I	RGATCY	2 cut(s)	253, 1118
BstYI	RGATCY	2 cut(s)	253, 1118
BsuRI	GGCC	2 cut(s)	352, 1203
BtgI	CCRYGG	1 cut(s)	1205
BtsCI	GGATG	7 cut(s)	722, 783, 1022, 1187, 1396, 1766, 2001
BtsI	GCAGTG	1 cut(s)	2155
BtsIMutI	CAGTG	7 cut(s)	407, 741, 965, 1252, 1323, 2100, 2155
BveI	ACCTGC	1 cut(s)	155
Cac8I	GCNNGC	7 cut(s)	209, 843, 1651, 1861, 1991, 2001, 2092
CaiI	CAGNNNCTG	3 cut(s)	1522, 1610, 2006
Cfr10I	RCCGGY	1 cut(s)	2090
Cfr13I	GGNCC	4 cut(s)	350, 1202, 1393, 1621
CsiI	ACCWGGT	1 cut(s)	1676
Csp6I	GTAC	4 cut(s)	563, 707, 1302, 2133
CspCI	CAANNNNNGTGG	2 cut(s)	2125, 2160
CviQI	GTAC	4 cut(s)	563, 707, 1302, 2133
DdeI	CTNAG	6 cut(s)	757, 805, 947, 1192, 1260, 2103
DpnI	GATC	6 cut(s)	39, 255, 600, 1120, 1149, 1221
DpnII	GATC	6 cut(s)	37, 253, 598, 1118, 1147, 1219
DraI	TTTAAA	2 cut(s)	784, 1546
Eam1104I	CTCTTC	1 cut(s)	2007
EarI	CTCTTC	1 cut(s)	2007
EciI	GGCGGA	1 cut(s)	2008
Ecl136II	GAGCTC	1 cut(s)	872
Eco130I	CCWWGG	1 cut(s)	1205
Eco24I	GRGCYC	2 cut(s)	874, 2111
Eco31I	GGTCTC	1 cut(s)	808
Eco47I	GGWCC	2 cut(s)	1393, 1621
Eco53kI	GAGCTC	1 cut(s)	872
Eco57I	CTGAAG	5 cut(s)	270, 435, 1293, 1382, 1452
Eco91I	GGTNACC	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	872
EcoO109I	RGGNCCY	1 cut(s)	1621
EcoO65I	GGTNACC	1 cut(s)	137
EcoRII	CCWGG	7 cut(s)	115, 217, 1001, 1228, 1515, 1676, 1719
EcoT14I	CCWWGG	1 cut(s)	1205
EcoT22I	ATGCAT	1 cut(s)	1459
EcoT38I	GRGCYC	2 cut(s)	874, 2111
ErhI	CCWWGG	1 cut(s)	1205
FaqI	GGGAC	2 cut(s)	262, 730
FauI	CCCGC	3 cut(s)	951, 1340, 1982
FauNDI	CATATG	2 cut(s)	1459, 1495
FbaI	TGATCA	1 cut(s)	598
FblI	GTMKAC	1 cut(s)	278
Fnu4HI	GCNGC	5 cut(s)	521, 635, 810, 1292, 1428
FokI	GGATG	7 cut(s)	709, 790, 1029, 1174, 1383, 1773, 2008
FriOI	GRGCYC	2 cut(s)	874, 2111
Fsp4HI	GCNGC	5 cut(s)	521, 635, 810, 1292, 1428
FspBI	CTAG	5 cut(s)	1704, 1860, 1914, 1932, 2142
GluI	GCNGC	5 cut(s)	521, 635, 810, 1292, 1428
GsaI	CCCAGC	2 cut(s)	1025, 1325
GsuI	CTGGAG	4 cut(s)	138, 210, 888, 1251
HaeIII	GGCC	2 cut(s)	352, 1203
HapII	CCGG	3 cut(s)	263, 1116, 2091
Hin1I	GRCGYC	2 cut(s)	47, 281
HincII	GTYRAC	2 cut(s)	279, 1266
HindII	GTYRAC	2 cut(s)	279, 1266
HindIII	AAGCTT	2 cut(s)	895, 1434
HpaI	GTTAAC	1 cut(s)	1266
HpaII	CCGG	3 cut(s)	263, 1116, 2091
HphI	GGTGA	7 cut(s)	69, 115, 149, 1181, 1628, 1678, 1766
Hpy166II	GTNNAC	3 cut(s)	279, 1266, 1927
Hpy8I	GTNNAC	3 cut(s)	279, 1266, 1927
Hpy99I	CGWCG	2 cut(s)	283, 378
HpyAV	CCTTC	7 cut(s)	4, 58, 505, 712, 1248, 1801, 2121
HpyCH4III	ACNGT	4 cut(s)	550, 969, 982, 1577
HpyCH4IV	ACGT	7 cut(s)	47, 281, 373, 1007, 1092, 1133, 1344
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 349, 526, 634, 1027, 1433, 1659, 1725
HpyF3I	CTNAG	6 cut(s)	757, 805, 947, 1192, 1260, 2103
HpySE526I	ACGT	7 cut(s)	47, 281, 373, 1007, 1092, 1133, 1344
Hsp92I	GRCGYC	2 cut(s)	47, 281
KpnI	GGTACC	1 cut(s)	2136
KroI	GCCGGC	1 cut(s)	2090
KroNI	GCCGGC	1 cut(s)	2092
Ksp22I	TGATCA	1 cut(s)	598
KspAI	GTTAAC	1 cut(s)	1266
Kzo9I	GATC	6 cut(s)	37, 253, 598, 1118, 1147, 1219
LmnI	GCTCC	3 cut(s)	331, 869, 1512
Lsp1109I	GCAGC	5 cut(s)	507, 646, 821, 1278, 1414
LweI	GCATC	3 cut(s)	491, 1986, 2012
MabI	ACCWGGT	1 cut(s)	1676
MaeI	CTAG	5 cut(s)	1704, 1860, 1914, 1932, 2142
MaeII	ACGT	7 cut(s)	47, 281, 373, 1007, 1092, 1133, 1344
MaeIII	GTNAC	7 cut(s)	75, 137, 354, 401, 550, 1680, 1936
MalI	GATC	6 cut(s)	39, 255, 600, 1120, 1149, 1221
MbiI	CCGCTC	1 cut(s)	958
MboI	GATC	6 cut(s)	37, 253, 598, 1118, 1147, 1219
MflI	RGATCY	2 cut(s)	253, 1118
MhlI	GDGCHC	3 cut(s)	874, 1032, 2111
MlyI	GAGTC	3 cut(s)	83, 455, 1643
MmeI	TCCRAC	1 cut(s)	994
Mph1103I	ATGCAT	1 cut(s)	1459
MroNI	GCCGGC	1 cut(s)	2090
MroXI	GAANNNNTTC	5 cut(s)	110, 295, 1284, 1532, 1972
MslI	CAYNNNNRTG	1 cut(s)	1934
MspCI	CTTAAG	1 cut(s)	685
MspI	CCGG	3 cut(s)	263, 1116, 2091
MspR9I	CCNGG	8 cut(s)	117, 219, 264, 1003, 1230, 1517, 1678, 1721
Mva1269I	GAATGC	5 cut(s)	750, 938, 1146, 1180, 1459
MvaI	CCWGG	7 cut(s)	117, 219, 1003, 1230, 1517, 1678, 1721
MwoI	GCNNNNNNNGC	8 cut(s)	11, 349, 526, 634, 1027, 1433, 1659, 1725
NaeI	GCCGGC	1 cut(s)	2092
NciI	CCSGG	1 cut(s)	264
NcoI	CCATGG	1 cut(s)	1205
NdeI	CATATG	2 cut(s)	1459, 1495
NdeII	GATC	6 cut(s)	37, 253, 598, 1118, 1147, 1219
NgoMIV	GCCGGC	1 cut(s)	2090
NheI	GCTAGC	1 cut(s)	1859
NlaIV	GGNNCC	7 cut(s)	255, 1120, 1514, 1623, 1718, 2095, 2134
NmuCI	GTSAC	4 cut(s)	75, 137, 1680, 1936
NsiI	ATGCAT	1 cut(s)	1459
NspI	RCATGY	4 cut(s)	386, 422, 1178, 2074
OliI	CACNNNNGTG	1 cut(s)	1934
PaqCI	CACCTGC	1 cut(s)	155
PctI	GAATGC	5 cut(s)	750, 938, 1146, 1180, 1459
PdiI	GCCGGC	1 cut(s)	2092
PdmI	GAANNNNTTC	5 cut(s)	110, 295, 1284, 1532, 1972
PfeI	GAWTC	8 cut(s)	241, 296, 412, 541, 698, 1256, 1326, 1475
Pfl23II	CGTACG	1 cut(s)	706
PkrI	GCNGC	5 cut(s)	522, 636, 811, 1293, 1429
PleI	GAGTC	3 cut(s)	82, 454, 1642
PpsI	GAGTC	3 cut(s)	82, 454, 1642
PpuMI	RGGWCCY	1 cut(s)	1621
Psp124BI	GAGCTC	1 cut(s)	874
Psp5II	RGGWCCY	1 cut(s)	1621
Psp6I	CCWGG	7 cut(s)	115, 217, 1001, 1228, 1515, 1676, 1719
PspEI	GGTNACC	1 cut(s)	137
PspFI	CCCAGC	2 cut(s)	1021, 1321
PspGI	CCWGG	7 cut(s)	115, 217, 1001, 1228, 1515, 1676, 1719
PspLI	CGTACG	1 cut(s)	706
PspN4I	GGNNCC	7 cut(s)	255, 1120, 1514, 1623, 1718, 2095, 2134
PspPI	GGNCC	4 cut(s)	350, 1202, 1393, 1621
PspPPI	RGGWCCY	1 cut(s)	1621
PstI	CTGCAG	1 cut(s)	525
PstNI	CAGNNNCTG	3 cut(s)	1522, 1610, 2006
PsuI	RGATCY	2 cut(s)	253, 1118
RsaI	GTAC	4 cut(s)	564, 708, 1303, 2134
RsaNI	GTAC	4 cut(s)	563, 707, 1302, 2133
RseI	CAYNNNNRTG	1 cut(s)	1934
SacI	GAGCTC	1 cut(s)	874
SalI	GTCGAC	1 cut(s)	277
SatI	GCNGC	5 cut(s)	521, 635, 810, 1292, 1428
Sau3AI	GATC	6 cut(s)	37, 253, 598, 1118, 1147, 1219
Sau96I	GGNCC	4 cut(s)	350, 1202, 1393, 1621
SchI	GAGTC	3 cut(s)	83, 455, 1643
ScrFI	CCNGG	8 cut(s)	117, 219, 264, 1003, 1230, 1517, 1678, 1721
SduI	GDGCHC	3 cut(s)	874, 1032, 2111
SexAI	ACCWGGT	1 cut(s)	1676
SfaNI	GCATC	3 cut(s)	491, 1986, 2012
SfcI	CTRYAG	3 cut(s)	521, 612, 1448
SinI	GGWCC	2 cut(s)	1393, 1621
SmiMI	CAYNNNNRTG	1 cut(s)	1934
SmlI	CTYRAG	2 cut(s)	685, 1057
SmoI	CTYRAG	2 cut(s)	685, 1057
SpeI	ACTAGT	2 cut(s)	1931, 2141
SsiI	CCGC	4 cut(s)	958, 1333, 1989, 1993
SspMI	CTAG	5 cut(s)	1704, 1860, 1914, 1932, 2142
SstI	GAGCTC	1 cut(s)	874
StyD4I	CCNGG	8 cut(s)	115, 217, 262, 1001, 1228, 1515, 1676, 1719
StyI	CCWWGG	1 cut(s)	1205
TaaI	ACNGT	4 cut(s)	550, 969, 982, 1577
TaiI	ACGT	7 cut(s)	50, 284, 376, 1010, 1095, 1136, 1347
TaqI	TCGA	1 cut(s)	278
TatI	WGTACW	2 cut(s)	562, 1301
TfiI	GAWTC	8 cut(s)	241, 296, 412, 541, 698, 1256, 1326, 1475
TscAI	CASTG	7 cut(s)	414, 741, 972, 1252, 1323, 2107, 2155
TseFI	GTSAC	4 cut(s)	75, 137, 1680, 1936
TseI	GCWGC	5 cut(s)	520, 634, 809, 1291, 1427
Tsp45I	GTSAC	4 cut(s)	75, 137, 1680, 1936
TspGWI	ACGGA	3 cut(s)	266, 327, 1526
TspRI	CASTG	7 cut(s)	414, 741, 972, 1252, 1323, 2107, 2155
Vha464I	CTTAAG	1 cut(s)	685
VpaK11BI	GGWCC	2 cut(s)	1393, 1621
XapI	RAATTY	6 cut(s)	472, 785, 1042, 1972, 2033, 2080
XbaI	TCTAGA	1 cut(s)	1703
XceI	RCATGY	4 cut(s)	386, 422, 1178, 2074
XmiI	GTMKAC	1 cut(s)	278
XmnI	GAANNNNTTC	5 cut(s)	110, 295, 1284, 1532, 1972
XspI	CTAG	5 cut(s)	1704, 1860, 1914, 1932, 2142
ZraI	GACGTC	2 cut(s)	48, 282
Zsp2I	ATGCAT	1 cut(s)	1459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.