Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

59520245 .. 59520862

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40453

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGAAACGAGACAGTAGTAGTAGCTGAAACTGCGGGGTCGATAAAAGTGGCGGTGGTAGTGTGCCTGTTGAGAGGCCAAAACGTGCTCTTGGGACGACGCCGCTCCTCTCTCGGAGATTCCACCTTTTCCCTTCCCAGTGGCCACCTTGAGTTTGGTAGCGAGAGCTTTGAGGAGTGTGCAGCAAGGGAACTGAAGGAAGAAACTGGTTTAGACATTGGCAAGATAGAATTGCTAACTGTGACCAACAACCTGTTCCTAGACGAAGCCAAACCATCGCAGTACGTGGCTGTTTTCATGAGAGCAGTGCTGGCAGATCCTCGTCAAGAGCCCCAGAATATTGAGCCAGAATTCTGTGATGGTTGGGGATGGTATGAGTGGGACAATCTTCCGAAGCCACTCTTCTGGCCTTTGGAGAAAGTGGTCCAGGATGGATTTAACCCTTTTCCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

151

Amino Acids

16.85

Weight (kDa)

4.54

Isoelectric Point (pI)

53.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	16 - 142	9.1e-18	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	105
AciI	CCGC	3 cut(s)	35, 53, 103
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	215
AcyI	GRCGYC	1 cut(s)	100
AfaI	GTAC	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	426
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	2 cut(s)	26, 168
AluI	AGCT	2 cut(s)	26, 168
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	3 cut(s)	76, 142, 407
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	424
BalI	TGGCCA	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	4 cut(s)	283, 353, 363, 425
BciT130I	CCWGG	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	260
BisI	GCNGC	2 cut(s)	103, 183
BlsI	GCNGC	2 cut(s)	104, 184
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	424
BmrFI	CCNGG	1 cut(s)	428
BmrI	ACTGGG	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	170
BsaAI	YACGTR	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	138, 211
BseBI	CCWGG	1 cut(s)	428
BseGI	GGATG	2 cut(s)	374, 436
BseNI	ACTGG	2 cut(s)	138, 211
BseRI	GAGGAG	2 cut(s)	97, 188
BseXI	GCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	201
BshFI	GGCC	3 cut(s)	78, 144, 409
BsiHKAI	GWGCWC	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	108, 395
BsmAI	GTCTC	1 cut(s)	5
BsmFI	GGGAC	2 cut(s)	108, 395
BsnI	GGCC	3 cut(s)	78, 144, 409
Bsp1286I	GDGCHC	2 cut(s)	90, 333
Bsp143I	GATC	1 cut(s)	316
BspACI	CCGC	3 cut(s)	35, 53, 103
BspANI	GGCC	3 cut(s)	78, 144, 409
BspHI	TCATGA	1 cut(s)	297
BspPI	GGATC	1 cut(s)	311
BsrBI	CCGCTC	1 cut(s)	105
BsrI	ACTGG	2 cut(s)	138, 211
BssMI	GATC	1 cut(s)	316
BssNI	GRCGYC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	2 cut(s)	16, 241
Bst6I	CTCTTC	1 cut(s)	407
BstACI	GRCGYC	1 cut(s)	100
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	312
BstF5I	GGATG	2 cut(s)	374, 436
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 311
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	316
BstXI	CCANNNNNNTGG	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	316
BsuRI	GGCC	3 cut(s)	78, 144, 409
BtgZI	GCGATG	1 cut(s)	261
BtsCI	GGATG	2 cut(s)	374, 436
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	2 cut(s)	145, 312
Cac8I	GCNNGC	1 cut(s)	312
CciI	TCATGA	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	424
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	2 cut(s)	298, 453
CviQI	GTAC	1 cut(s)	283
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
EaeI	YGGCCR	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Eco24I	GRGCYC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	333
FaeI	CATG	2 cut(s)	301, 456
FaiI	YATR	3 cut(s)	299, 375, 454
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	2 cut(s)	108, 395
FatI	CATG	2 cut(s)	297, 452
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	2 cut(s)	103, 183
FokI	GGATG	2 cut(s)	381, 443
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	2 cut(s)	103, 183
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	2 cut(s)	103, 183
HaeIII	GGCC	3 cut(s)	78, 144, 409
HgaI	GACGC	1 cut(s)	108
Hin1I	GRCGYC	1 cut(s)	100
Hin1II	CATG	2 cut(s)	301, 456
HinfI	GANTC	1 cut(s)	119
Hpy188I	TCNGA	2 cut(s)	116, 393
Hpy188III	TCNNGA	2 cut(s)	298, 326
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	2 cut(s)	143, 190
HpyCH4III	ACNGT	2 cut(s)	16, 241
HpyCH4IV	ACGT	2 cut(s)	84, 285
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 311
HpySE526I	ACGT	2 cut(s)	84, 285
Hsp92I	GRCGYC	1 cut(s)	100
Hsp92II	CATG	2 cut(s)	301, 456
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	1 cut(s)	194
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	2 cut(s)	84, 285
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	318
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	1 cut(s)	316
MboII	GAAGA	3 cut(s)	212, 380, 394
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	2 cut(s)	90, 333
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	2 cut(s)	230, 350
MluNI	TGGCCA	1 cut(s)	144
MnlI	CCTC	4 cut(s)	68, 118, 166, 330
Mox20I	TGGCCA	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	1 cut(s)	438
Msp20I	TGGCCA	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	428
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	2 cut(s)	32, 311
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	2 cut(s)	301, 456
NmuCI	GTSAC	1 cut(s)	241
PagI	TCATGA	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	426
PkrI	GCNGC	2 cut(s)	104, 184
Ppu21I	YACGTR	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	316
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	2 cut(s)	103, 183
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	1 cut(s)	424
ScrFI	CCNGG	1 cut(s)	428
SduI	GDGCHC	2 cut(s)	90, 333
SetI	ASST	7 cut(s)	28, 87, 128, 150, 170, 255, 288
SinI	GGWCC	1 cut(s)	424
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	230, 350
SsiI	CCGC	3 cut(s)	35, 53, 103
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	426
TaaI	ACNGT	2 cut(s)	16, 241
TaiI	ACGT	2 cut(s)	87, 288
TaqI	TCGA	1 cut(s)	41
TasI	AATT	2 cut(s)	230, 350
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	2 cut(s)	145, 312
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	286
TspRI	CASTG	2 cut(s)	145, 312
VpaK11BI	GGWCC	1 cut(s)	424
XapI	RAATTY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.