Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

28989106 .. 28990422

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCGGACGAGACGGTGGTTGAAGCTGCTGCGAGGATACCCAAAGTGGTAGTAGTGGTGTGCTTGTTGAGAGGATACAAGGTGTTGTTGGGCCGGCGCCGCTCCTCTCTCGGTGATTCTATGTTTTCCCTCCCCGGAGGTCACCTCGAGTATGGTGAGAGCTTTGAGGAGTGCGCAATAAGAGAAGTGAAGGAAGAAACTGGTTTAGACATTGATCAGTTAGAGTTTATAAACGTCACAAACAACTTGTTCTCTGAGGAAGGCAAACCATACCATTACGTGGTAGTTTCTATGCGAGCAGTCTTGGCAGATCATCAACATGCCCAGAATGTTGAGCCAGACTTCTGCGATGGTTGGGGATGGTATGAGTGGAACAACCTCCCCAAGCCACTGTTTTCGCCCTTGGAAAAAGCAGTTCAGGCTGGATTTAATCCTTTCCCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

149

Amino Acids

16.67

Weight (kDa)

4.85

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	16 - 132	2.3e-20	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	230
Acc16I	TGCGCA	1 cut(s)	175
AccB1I	GGYRCC	1 cut(s)	96
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccBSI	CCGCTC	1 cut(s)	102
AciI	CCGC	2 cut(s)	5, 100
AcyI	GRCGYC	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	23
AluBI	AGCT	2 cut(s)	26, 162
AluI	AGCT	2 cut(s)	26, 162
Alw26I	GTCTC	1 cut(s)	5
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	2 cut(s)	26, 29
AspLEI	GCGC	2 cut(s)	99, 176
AspS9I	GGNCC	1 cut(s)	91
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	3 cut(s)	125, 134, 167
AvaI	CYCGRG	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	13, 16
BccI	CCATC	2 cut(s)	344, 354
BciVI	GTATCC	2 cut(s)	30, 68
BclI	TGATCA	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	5
BfoI	RGCGCY	1 cut(s)	100
BfuI	GTATCC	2 cut(s)	30, 68
BisI	GCNGC	3 cut(s)	27, 30, 100
BlsI	GCNGC	3 cut(s)	28, 31, 101
Bme1390I	CCNGG	1 cut(s)	135
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	129, 161
BpuMI	CCSGG	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	280
BsaHI	GRCGYC	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	133, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	205
BseDI	CCNNGG	2 cut(s)	133, 402
BseGI	GGATG	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	2 cut(s)	94, 182
BseXI	GCAGC	2 cut(s)	13, 16
BshFI	GGCC	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	94, 135
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	5
BsmBI	CGTCTC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	93
BsoBI	CYCGRG	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	214, 310
BspACI	CCGC	2 cut(s)	5, 100
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	96
BsrBI	CCGCTC	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	205
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	133, 402
BssMI	GATC	2 cut(s)	214, 310
BssNI	GRCGYC	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	402
Bst4CI	ACNGT	2 cut(s)	16, 393
BstACI	GRCGYC	1 cut(s)	97
BstBAI	YACGTR	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	95, 297
BstDEI	CTNAG	1 cut(s)	255
BstEII	GGTNACC	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	365
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	2 cut(s)	99, 176
BstKTI	GATC	2 cut(s)	217, 313
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	2 cut(s)	214, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 305, 419
BstNSI	RCATGY	1 cut(s)	323
BstPI	GGTNACC	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	13, 16
BsuI	GTATCC	2 cut(s)	30, 68
BsuRI	GGCC	1 cut(s)	93
BtgZI	GCGATG	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	365
BtsIMutI	CAGTG	1 cut(s)	389
Cac8I	GCNNGC	2 cut(s)	95, 297
CfoI	GCGC	2 cut(s)	99, 176
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	91
CviAII	CATG	1 cut(s)	320
CviJI	RGCY	6 cut(s)	26, 93, 162, 337, 388, 422
CviKI_1	RGCY	6 cut(s)	26, 93, 162, 337, 388, 422
DdeI	CTNAG	1 cut(s)	255
DinI	GGCGCC	1 cut(s)	98
DpnI	GATC	2 cut(s)	216, 312
DpnII	GATC	2 cut(s)	214, 310
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	146
Eco91I	GGTNACC	1 cut(s)	140
EcoO65I	GGTNACC	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	402
EgeI	GGCGCC	1 cut(s)	98
EheI	GGCGCC	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	402
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	1 cut(s)	323
FaiI	YATR	7 cut(s)	122, 153, 230, 271, 293, 321, 366
FatI	CATG	1 cut(s)	319
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	3 cut(s)	27, 30, 100
FokI	GGATG	1 cut(s)	372
Fsp4HI	GCNGC	3 cut(s)	27, 30, 100
FspI	TGCGCA	1 cut(s)	175
GlaI	GCGC	2 cut(s)	98, 175
GluI	GCNGC	3 cut(s)	27, 30, 100
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	2 cut(s)	94, 135
HhaI	GCGC	2 cut(s)	99, 176
Hin1I	GRCGYC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	323
Hin6I	GCGC	2 cut(s)	97, 174
HinP1I	GCGC	2 cut(s)	97, 174
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	2 cut(s)	94, 135
HphI	GGTGA	3 cut(s)	125, 134, 167
Hpy188I	TCNGA	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	184, 254
HpyCH4III	ACNGT	2 cut(s)	16, 393
HpyCH4IV	ACGT	2 cut(s)	234, 279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 305, 419
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	2 cut(s)	234, 279
Hsp92I	GRCGYC	1 cut(s)	97
Hsp92II	CATG	1 cut(s)	323
HspAI	GCGC	2 cut(s)	97, 174
KasI	GGCGCC	1 cut(s)	96
KroI	GCCGGC	1 cut(s)	93
KroNI	GCCGGC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	214, 310
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	7 cut(s)	107, 148, 186, 338, 351, 404, 408
Lsp1109I	GCAGC	2 cut(s)	13, 16
MaeII	ACGT	2 cut(s)	234, 279
MaeIII	GTNAC	2 cut(s)	140, 235
MalI	GATC	2 cut(s)	216, 312
MbiI	CCGCTC	1 cut(s)	102
MboI	GATC	2 cut(s)	214, 310
MboII	GAAGA	1 cut(s)	206
Mly113I	GGCGCC	1 cut(s)	97
MnlI	CCTC	9 cut(s)	27, 65, 115, 131, 140, 155, 160, 250, 389
MroNI	GCCGGC	1 cut(s)	93
MseI	TTAA	2 cut(s)	429, 445
MslI	CAYNNNNRTG	1 cut(s)	318
MspI	CCGG	2 cut(s)	94, 135
MspR9I	CCNGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	3 cut(s)	99, 305, 419
NaeI	GCCGGC	1 cut(s)	95
NarI	GGCGCC	1 cut(s)	97
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	214, 310
NgoMIV	GCCGGC	1 cut(s)	93
NlaIII	CATG	1 cut(s)	323
NlaIV	GGNNCC	1 cut(s)	98
NmuCI	GTSAC	2 cut(s)	140, 235
NsbI	TGCGCA	1 cut(s)	175
NspI	RCATGY	1 cut(s)	323
PaeR7I	CTCGAG	1 cut(s)	146
PdiI	GCCGGC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	116
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	3 cut(s)	28, 31, 101
PluTI	GGCGCC	1 cut(s)	100
Ppu21I	YACGTR	1 cut(s)	280
PsiI	TTATAA	1 cut(s)	230
PspEI	GGTNACC	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	91
PspXI	VCTCGAGB	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	429, 445
SatI	GCNGC	3 cut(s)	27, 30, 100
Sau3AI	GATC	2 cut(s)	214, 310
Sau96I	GGNCC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	8 cut(s)	28, 84, 142, 147, 164, 237, 282, 381
SfoI	GGCGCC	1 cut(s)	98
Sfr274I	CTCGAG	1 cut(s)	146
SlaI	CTCGAG	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SsiI	CCGC	2 cut(s)	5, 100
SspDI	GGCGCC	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	2 cut(s)	16, 393
TaiI	ACGT	2 cut(s)	237, 282
TaqI	TCGA	1 cut(s)	147
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	2 cut(s)	429, 445
Tru9I	TTAA	2 cut(s)	429, 445
TscAI	CASTG	1 cut(s)	396
TseFI	GTSAC	2 cut(s)	140, 235
TseI	GCWGC	2 cut(s)	26, 29
Tsp45I	GTSAC	2 cut(s)	140, 235
TspRI	CASTG	1 cut(s)	396
Van91I	CCANNNNNTGG	1 cut(s)	280
XceI	RCATGY	1 cut(s)	323
XhoI	CTCGAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.