Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

3428299 .. 3428672

Gene Structure 374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1048800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGTTAACGGAACAATACAGCGTCCCGTGCCGAAAGTGGCAGTGGTGGTGTGTTTGTTGAAAGGGAAGAAGGTGATGTTGGAGCGCCGCCGTTCCTCTCTTGGCGACTCCACCTTTTCCCCCCCTGGTGGCCACCTCGAATTCGGCAAGAGCTTTGAGGAGTGTGCAGCAAGAGAAGTGACGGAAGAACTGGGTTGGACATTGAGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

71

Amino Acids

7.79

Weight (kDa)

9.58

Isoelectric Point (pI)

78.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	12 - 67	6.1e-11	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	124
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	85
BalI	TGGCCA	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	88
BisI	GCNGC	2 cut(s)	88, 168
BlsI	GCNGC	2 cut(s)	89, 169
Bme1390I	CCNGG	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	126
BmrI	ACTGGG	1 cut(s)	200
BmuI	ACTGGG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	132
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
CfoI	GCGC	1 cut(s)	87
CseI	GACGC	1 cut(s)	11
CviJI	RGCY	2 cut(s)	132, 153
CviKI_1	RGCY	2 cut(s)	132, 153
EaeI	YGGCCR	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	124
FaqI	GGGAC	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	88, 168
Fsp4HI	GCNGC	2 cut(s)	88, 168
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	2 cut(s)	88, 168
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	132
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	87
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	107
HpaI	GTTAAC	1 cut(s)	7
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	7
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HspAI	GCGC	1 cut(s)	85
KspAI	GTTAAC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	3 cut(s)	111, 138, 176
Lsp1109I	GCAGC	1 cut(s)	179
MaeIII	GTNAC	1 cut(s)	178
MboII	GAAGA	2 cut(s)	79, 197
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	1 cut(s)	140
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	2 cut(s)	60, 176
MnlI	CCTC	3 cut(s)	106, 146, 151
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	6
Msp20I	TGGCCA	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	89, 169
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	2 cut(s)	88, 168
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	4 cut(s)	75, 116, 138, 155
SgeI	CNNG	9 cut(s)	38, 40, 113, 137, 138, 149, 160, 183, 203
Sse9I	AATT	1 cut(s)	140
SsiI	CCGC	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	124
TaqI	TCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	140
TauI	GCSGC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	178
TspGWI	ACGGA	2 cut(s)	24, 197
TspRI	CASTG	1 cut(s)	48
XapI	RAATTY	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.