Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

2923219 .. 2923925

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g04320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTTGAGCAAACACAAAACATGCAAAACGGGATTGCGGCGCCGAGAGTGGTGGTTGTGGTGTGCCTGTTGAAAGGGAAGAAGGTGCTCTTAGGACGCCGTCGTTCCTCCATTGGTGACTCCAAGTTTTCCCTCGCTAGCGGTCACCTGGAGTTCGGTGAGAGCTTTGAGGAGTGTGCAGCAAGAGAGCTGAAGGAAGAAACTGACTTGGACATTAAAAATATAGAATTGCTGACGGTCACAAACCATGTGTTTCGAGAGGAAGCGAAGCCGTGCCACTACGTGGCGATTGTCACCAGAGCAGTGTTAGCAGATGAAGATCAAGAACCTCGTAATATGGAGCCAAACATGTGTGATGGTTGGGATTGGTACGAGTGGGATAATCTCCCTGAGCCACTCTTTCGGCCTTTGGAGAAGGCGGTGCAGGCCGGATTTAATCCTTTCCGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

151

Amino Acids

17.12

Weight (kDa)

5.03

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccB7I	CCANNNNNTGG	1 cut(s)	283
AciI	CCGC	3 cut(s)	38, 141, 419
AcuI	CTGAAG	1 cut(s)	212
AcyI	GRCGYC	2 cut(s)	41, 97
AdeI	CACNNNGTG	1 cut(s)	283
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	283
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	2 cut(s)	165, 190
AluI	AGCT	2 cut(s)	165, 190
Alw21I	GWGCWC	1 cut(s)	90
AoxI	GGCC	2 cut(s)	404, 426
ApeKI	GCWGC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	43
AsuHPI	GGTGA	4 cut(s)	128, 137, 170, 286
AsuNHI	GCTAGC	1 cut(s)	137
BanI	GGYRCC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	2 cut(s)	84, 256
BciT130I	CCWGG	1 cut(s)	149
BfaI	CTAG	1 cut(s)	138
BfoI	RGCGCY	1 cut(s)	44
BisI	GCNGC	2 cut(s)	39, 180
BlsI	GCNGC	2 cut(s)	40, 181
Bme1390I	CCNGG	1 cut(s)	149
BmiI	GGNNCC	2 cut(s)	42, 342
BmrFI	CCNGG	1 cut(s)	149
BmtI	GCTAGC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	170
Bpu10I	CCTNAGC	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	283
BsaBI	GATNNNNATC	1 cut(s)	318
BsaHI	GRCGYC	2 cut(s)	41, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse8I	GATNNNNATC	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	149
BseJI	GATNNNNATC	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMII	CTCAG	1 cut(s)	381
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	191
BsgI	GTGCAG	2 cut(s)	198, 443
BshFI	GGCC	2 cut(s)	406, 428
BshNI	GGYRCC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	283
BsnI	GGCC	2 cut(s)	406, 428
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	3 cut(s)	38, 141, 419
BspANI	GGCC	2 cut(s)	406, 428
BspCNI	CTCAG	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	42, 342
BspOI	GCTAGC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	40
BssMI	GATC	1 cut(s)	319
BssNI	GRCGYC	2 cut(s)	41, 97
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	238
BstACI	GRCGYC	2 cut(s)	41, 97
BstBAI	YACGTR	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	139, 426
BstDEI	CTNAG	2 cut(s)	91, 390
BstEII	GGTNACC	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 425
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	2 cut(s)	25, 352
BstPI	GGTNACC	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	406, 428
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	2 cut(s)	139, 426
CfoI	GCGC	1 cut(s)	43
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	4 cut(s)	22, 248, 349, 450
CviJI	RGCY	7 cut(s)	165, 190, 271, 343, 394, 406, 428
CviKI_1	RGCY	7 cut(s)	165, 190, 271, 343, 394, 406, 428
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	2 cut(s)	91, 390
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
DraIII	CACNNNGTG	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	212
Eco91I	GGTNACC	1 cut(s)	143
EcoO65I	GGTNACC	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	147
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
FaeI	CATG	4 cut(s)	25, 251, 352, 453
FaiI	YATR	6 cut(s)	23, 224, 249, 338, 350, 451
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	4 cut(s)	21, 247, 348, 449
Fnu4HI	GCNGC	2 cut(s)	39, 180
Fsp4HI	GCNGC	2 cut(s)	39, 180
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	2 cut(s)	39, 180
GsuI	CTGGAG	1 cut(s)	170
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	406, 428
HapII	CCGG	1 cut(s)	429
HgaI	GACGC	1 cut(s)	105
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	2 cut(s)	41, 97
Hin1II	CATG	4 cut(s)	25, 251, 352, 453
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	4 cut(s)	128, 137, 170, 286
Hpy188III	TCNNGA	2 cut(s)	257, 323
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	3 cut(s)	76, 187, 409
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	3 cut(s)	25, 179, 424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 425
HpyF3I	CTNAG	2 cut(s)	91, 390
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	2 cut(s)	41, 97
Hsp92II	CATG	4 cut(s)	25, 251, 352, 453
HspAI	GCGC	1 cut(s)	41
KasI	GGCGCC	1 cut(s)	40
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	7 cut(s)	80, 134, 161, 310, 402, 410, 442
Lsp1109I	GCAGC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	4 cut(s)	116, 143, 238, 292
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	3 cut(s)	91, 209, 329
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	1 cut(s)	227
Mly113I	GGCGCC	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	5 cut(s)	118, 143, 163, 253, 339
MseI	TTAA	2 cut(s)	216, 435
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	308, 425
NarI	GGCGCC	1 cut(s)	41
NdeII	GATC	1 cut(s)	319
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	4 cut(s)	25, 251, 352, 453
NlaIV	GGNNCC	2 cut(s)	42, 342
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	4 cut(s)	116, 143, 238, 292
NspI	RCATGY	2 cut(s)	25, 352
PciI	ACATGT	1 cut(s)	348
PflFI	GACNNNGTC	1 cut(s)	99
PflMI	CCANNNNNTGG	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	40, 181
PleI	GAGTC	1 cut(s)	113
PluTI	GGCGCC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	113
Ppu21I	YACGTR	1 cut(s)	283
PscI	ACATGT	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	147
PspEI	GGTNACC	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	42, 342
PsyI	GACNNNGTC	1 cut(s)	99
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SaqAI	TTAA	2 cut(s)	216, 435
SatI	GCNGC	2 cut(s)	39, 180
Sau3AI	GATC	1 cut(s)	319
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	6 cut(s)	87, 150, 167, 192, 285, 331
SfoI	GGCGCC	1 cut(s)	42
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	3 cut(s)	38, 141, 419
SspDI	GGCGCC	1 cut(s)	40
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	1 cut(s)	256
TasI	AATT	1 cut(s)	227
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	216, 435
Tru9I	TTAA	2 cut(s)	216, 435
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	4 cut(s)	116, 143, 238, 292
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	4 cut(s)	116, 143, 238, 292
TspDTI	ATGAA	1 cut(s)	330
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	1 cut(s)	309
Tth111I	GACNNNGTC	1 cut(s)	99
Van91I	CCANNNNNTGG	1 cut(s)	283
XceI	RCATGY	2 cut(s)	25, 352
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.