Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Forward (+)

18235212 .. 18236375

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTCAACGTTGAAGTTGCGGCGCCCAAAGTGGTGGTGGTGGTGTGCTTGCTGAGAGGGAATAGGGTGTTGTTGGGACGGCGCCGCTCATCTCTTGGTGATTCCAAATTTTCCCTCCCTGGTGGACACCTCGAGTTCGGTGAGAGCTTTGAGGAGTGTGCAACAAGAGAGATGAAAGAAGAAACTGGTTTAGACATTGATAACTTGGAGTTTCTAACACTGACAAACAACCTGTTCATTGACGAAACCAAACCACACCACTACGTGGTGATTTGTATGCGAGCAGTCTTGGCAGATCATCATCAACAGCCCCAGAATATTGAGCCAGACTTCTGTGATGGTTGGGGATGGTATGAGTGGGACAACCTTCCCAAGCCACTCTTTTCTCCCTTGGAAAAAGCAGTTCGAGCTGGATTTAATCCTTTCCCCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

145

Amino Acids

16.37

Weight (kDa)

5.17

Isoelectric Point (pI)

56.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	11 - 130	5.5e-21	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	22, 81
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccBSI	CCGCTC	1 cut(s)	87
AciI	CCGC	2 cut(s)	20, 85
AclI	AACGTT	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	107
AcyI	GRCGYC	2 cut(s)	23, 82
AdeI	CACNNNGTG	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	2 cut(s)	147, 410
AluI	AGCT	2 cut(s)	147, 410
Ama87I	CYCGRG	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	107
AspLEI	GCGC	2 cut(s)	25, 84
AsuHPI	GGTGA	3 cut(s)	110, 152, 280
AvaI	CYCGRG	1 cut(s)	131
BanI	GGYRCC	2 cut(s)	22, 81
BccI	CCATC	2 cut(s)	332, 342
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	120
BfoI	RGCGCY	2 cut(s)	26, 85
BisI	GCNGC	2 cut(s)	21, 85
BlsI	GCNGC	2 cut(s)	22, 86
Bme1390I	CCNGG	1 cut(s)	120
BmeT110I	CYCGRG	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	24, 83
BmrFI	CCNGG	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	265
BsaBI	GATNNNNATC	1 cut(s)	300
BsaHI	GRCGYC	2 cut(s)	23, 82
BsaJI	CCNNGG	2 cut(s)	118, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	2 cut(s)	118, 390
BseGI	GGATG	1 cut(s)	353
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	167
BshNI	GGYRCC	2 cut(s)	22, 81
BsiHKCI	CYCGRG	1 cut(s)	131
BslFI	GGGAC	2 cut(s)	90, 374
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmFI	GGGAC	2 cut(s)	90, 374
BsoBI	CYCGRG	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	295
BspACI	CCGC	2 cut(s)	20, 85
BspCNI	CTCAG	1 cut(s)	45
BspLI	GGNNCC	2 cut(s)	24, 83
BspT107I	GGYRCC	2 cut(s)	22, 81
BsrBI	CCGCTC	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	118, 390
BssMI	GATC	1 cut(s)	295
BssNI	GRCGYC	2 cut(s)	23, 82
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	120
BstACI	GRCGYC	2 cut(s)	23, 82
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	50, 282
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	353
BstH2I	RGCGCY	2 cut(s)	26, 85
BstHHI	GCGC	2 cut(s)	25, 84
BstKTI	GATC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 407
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	218
Cac8I	GCNNGC	2 cut(s)	50, 282
CfoI	GCGC	2 cut(s)	25, 84
CviJI	RGCY	5 cut(s)	147, 310, 325, 376, 410
CviKI_1	RGCY	5 cut(s)	147, 310, 325, 376, 410
DdeI	CTNAG	1 cut(s)	53
DinI	GGCGCC	2 cut(s)	24, 83
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
DraIII	CACNNNGTG	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	390
EgeI	GGCGCC	2 cut(s)	24, 83
EheI	GGCGCC	2 cut(s)	24, 83
ErhI	CCWWGG	1 cut(s)	390
FaiI	YATR	2 cut(s)	278, 354
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	2 cut(s)	90, 374
Fnu4HI	GCNGC	2 cut(s)	21, 85
FokI	GGATG	1 cut(s)	360
Fsp4HI	GCNGC	2 cut(s)	21, 85
GlaI	GCGC	2 cut(s)	24, 83
GluI	GCNGC	2 cut(s)	21, 85
HaeII	RGCGCY	2 cut(s)	26, 85
HhaI	GCGC	2 cut(s)	25, 84
Hin1I	GRCGYC	2 cut(s)	23, 82
Hin6I	GCGC	2 cut(s)	23, 82
HinP1I	GCGC	2 cut(s)	23, 82
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	101
HphI	GGTGA	3 cut(s)	110, 152, 280
Hpy166II	GTNNAC	2 cut(s)	7, 125
Hpy8I	GTNNAC	2 cut(s)	7, 125
HpyAV	CCTTC	1 cut(s)	377
HpyCH4IV	ACGT	2 cut(s)	9, 264
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 407
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	2 cut(s)	9, 264
Hsp92I	GRCGYC	2 cut(s)	23, 82
HspAI	GCGC	2 cut(s)	23, 82
KasI	GGCGCC	2 cut(s)	22, 81
Kzo9I	GATC	1 cut(s)	295
LpnPI	CCDG	7 cut(s)	105, 132, 171, 245, 326, 339, 396
MaeII	ACGT	2 cut(s)	9, 264
MalI	GATC	1 cut(s)	297
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	1 cut(s)	295
MboII	GAAGA	1 cut(s)	191
MluCI	AATT	1 cut(s)	107
Mly113I	GGCGCC	2 cut(s)	23, 82
MnlI	CCTC	4 cut(s)	50, 125, 140, 145
MseI	TTAA	1 cut(s)	417
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	290, 407
NarI	GGCGCC	2 cut(s)	23, 82
NdeII	GATC	1 cut(s)	295
NlaIV	GGNNCC	2 cut(s)	24, 83
PaeR7I	CTCGAG	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	2 cut(s)	22, 86
PluTI	GGCGCC	2 cut(s)	26, 85
Ppu21I	YACGTR	1 cut(s)	265
Psp1406I	AACGTT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	24, 83
PspXI	VCTCGAGB	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	2 cut(s)	21, 85
Sau3AI	GATC	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	120
SetI	ASST	7 cut(s)	12, 132, 149, 234, 267, 369, 412
SfoI	GGCGCC	2 cut(s)	24, 83
Sfr274I	CTCGAG	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	2 cut(s)	20, 85
SspDI	GGCGCC	2 cut(s)	22, 81
SspI	AATATT	1 cut(s)	319
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	390
TaiI	ACGT	2 cut(s)	12, 267
TaqI	TCGA	2 cut(s)	132, 406
TasI	AATT	1 cut(s)	107
TauI	GCSGC	2 cut(s)	23, 87
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	225
TspDTI	ATGAA	2 cut(s)	188, 226
TspRI	CASTG	1 cut(s)	225
Van91I	CCANNNNNTGG	1 cut(s)	265
XapI	RAATTY	1 cut(s)	107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XhoI	CTCGAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.