Rorug02G0370400

Nudix hydrolase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
47280177 .. 47280842
666 bp
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UTR
Exon/CDS
Intron
Rorug02G0370400.1

Sequence Viewer

Length: 174 bp
ATGGAAGAAGTTAAAAGACTTTGCGGGGTCTGTTGCAAATGGTGCTTTAAAATGGCTGAGAGACAACCTCTAGTCCGGTATCAGTCAACTAAAATATTGGCACTAATTTTTCTTCCTCCCAGGCTCCCTTCAGGATTAATGGTCTGGAATGAGCCTTACGGTCATTTACTCTGA

Protein Analysis

57

Amino Acids

6.69

Weight (kDa)

9.13

Isoelectric Point (pI)

57.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000600)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68760
fragaria_vesca FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 114
AjnI CCWGG 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 55
AseI ATTAAT 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 52, 84
BsaJI CCNNGG 1 cut(s) 119
BsaWI WCCGGW 1 cut(s) 75
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 55
BspACI CCGC 1 cut(s) 24
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 161
BstAPI GCANNNNNTGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 57
BstMAI GTCTC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 119
CviJI RGCY 3 cut(s) 56, 124, 154
CviKI_1 RGCY 3 cut(s) 56, 124, 154
DdeI CTNAG 1 cut(s) 57
DraI TTTAAA 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 119
FauI CCCGC 1 cut(s) 17
FspBI CTAG 1 cut(s) 71
HapII CCGG 1 cut(s) 76
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HpaII CCGG 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 1 cut(s) 173
Hpy188III TCNNGA 2 cut(s) 132, 145
Hpy8I GTNNAC 1 cut(s) 87
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 1 cut(s) 57
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 5 cut(s) 89, 106, 117, 130, 133
MaeI CTAG 1 cut(s) 71
MboII GAAGA 2 cut(s) 17, 104
MluCI AATT 1 cut(s) 105
MnlI CCTC 2 cut(s) 78, 126
MseI TTAA 3 cut(s) 12, 48, 137
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 42
NlaIV GGNNCC 1 cut(s) 125
PshBI ATTAAT 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 125
SaqAI TTAA 3 cut(s) 12, 48, 137
ScrFI CCNGG 1 cut(s) 121
SetI ASST 1 cut(s) 70
SgeI CNNG 7 cut(s) 37, 83, 88, 132, 133, 144, 157
Sse9I AATT 1 cut(s) 105
SsiI CCGC 1 cut(s) 24
SspI AATATT 1 cut(s) 96
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 119
TaaI ACNGT 1 cut(s) 161
TasI AATT 1 cut(s) 105
Tru1I TTAA 3 cut(s) 12, 48, 137
Tru9I TTAA 3 cut(s) 12, 48, 137
VspI ATTAAT 1 cut(s) 137
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.