Rmu_sc0001455.1_g000026

Nudix hydrolase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001455.1
Physical Location & Seq
Reverse (-)
116919 .. 117690
772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001455.1_g000026.1.cds

Sequence Viewer

Length: 453 bp
atggttaacgagacggatgttgaagctatgatgccgggcaaggtgcccaaagtggtagttgtggtatgcttgttgagagggaacaaggtgttgttgggacgacgtcgctcatctcttggtgattccaccttttcccttcctgggggacacctcgagtttggtgagagctttgaggagtgtgcaacaagagaagtgaaggaagaaactggtttagacattgataagttagagtttctgacaatcacaaacaacctattcttagacaaagacaaaccataccattacctagtgatttctatgcgagcagtcttggcagatcatcaacagcctcagaatattgagccagacttttgtgatggttggggttggtatgagtgggacaacctccccaagccactcttttcacccttggaaaaagcagttcaggctggatttaatcctttccctttttaa

Protein Analysis

150

Amino Acids

17.02

Weight (kDa)

4.84

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000600)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68760
fragaria_vesca FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 43
AcyI GRCGYC 1 cut(s) 103
AfiI CCNNNNNNNGG 2 cut(s) 141, 142
AgsI TTSAA 1 cut(s) 23
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 2 cut(s) 26, 168
AluI AGCT 2 cut(s) 26, 168
Alw26I GTCTC 1 cut(s) 5
Ama87I CYCGRG 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 3 cut(s) 131, 173, 396
AvaI CYCGRG 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 48
BanI GGYRCC 1 cut(s) 43
BccI CCATC 1 cut(s) 350
BciT130I CCWGG 1 cut(s) 141
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 1 cut(s) 287
Bme1390I CCNGG 2 cut(s) 36, 141
BmeT110I CYCGRG 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 2 cut(s) 36, 141
BmsI GCATC 1 cut(s) 21
BpuMI CCSGG 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 103
BsaJI CCNNGG 2 cut(s) 140, 408
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 142
Bse1I ACTGG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 140, 408
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 2 cut(s) 141, 142
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 1 cut(s) 188
BseSI GKGCMC 1 cut(s) 48
BshNI GGYRCC 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 35
BslFI GGGAC 3 cut(s) 111, 159, 392
BslI CCNNNNNNNGG 2 cut(s) 141, 142
BsmAI GTCTC 1 cut(s) 5
BsmBI CGTCTC 1 cut(s) 5
BsmFI GGGAC 3 cut(s) 111, 159, 392
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 1 cut(s) 316
BspCNI CTCAG 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 43
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 2 cut(s) 140, 408
BssMI GATC 1 cut(s) 316
BssNI GRCGYC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 141
BstACI GRCGYC 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 2 cut(s) 259, 330
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 2 cut(s) 311, 425
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 2 cut(s) 34, 139
BstSLI GKGCMC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 303
CviJI RGCY 6 cut(s) 26, 168, 328, 343, 394, 428
CviKI_1 RGCY 6 cut(s) 26, 168, 328, 343, 394, 428
DdeI CTNAG 2 cut(s) 259, 330
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 408
Eco88I CYCGRG 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 408
Esp3I CGTCTC 1 cut(s) 5
FaiI YATR 5 cut(s) 29, 67, 277, 299, 372
FalI AAGNNNNNCTT 2 cut(s) 383, 415
FaqI GGGAC 3 cut(s) 111, 159, 392
FokI GGATG 1 cut(s) 29
FspBI CTAG 1 cut(s) 287
HapII CCGG 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 1 cut(s) 122
HpaI GTTAAC 1 cut(s) 7
HpaII CCGG 1 cut(s) 35
HphI GGTGA 3 cut(s) 131, 173, 396
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 2 cut(s) 237, 333
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 2 cut(s) 105, 108
HpyAV CCTTC 2 cut(s) 146, 190
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 425
HpyF3I CTNAG 2 cut(s) 259, 330
HpySE526I ACGT 1 cut(s) 103
Hsp92I GRCGYC 1 cut(s) 103
KspAI GTTAAC 1 cut(s) 7
Kzo9I GATC 1 cut(s) 316
LpnPI CCDG 7 cut(s) 48, 126, 153, 192, 357, 410, 414
LweI GCATC 1 cut(s) 21
MaeI CTAG 1 cut(s) 287
MaeII ACGT 1 cut(s) 103
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 48
MnlI CCTC 5 cut(s) 71, 161, 166, 339, 395
MseI TTAA 3 cut(s) 6, 435, 451
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 2 cut(s) 36, 141
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 2 cut(s) 311, 425
NciI CCSGG 1 cut(s) 36
NdeII GATC 1 cut(s) 316
NlaIV GGNNCC 1 cut(s) 45
PaeR7I CTCGAG 1 cut(s) 152
PfeI GAWTC 1 cut(s) 122
PflFI GACNNNGTC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 45
PspXI VCTCGAGB 1 cut(s) 152
PsyI GACNNNGTC 1 cut(s) 102
SaqAI TTAA 3 cut(s) 6, 435, 451
Sau3AI GATC 1 cut(s) 316
ScrFI CCNGG 2 cut(s) 36, 141
SduI GDGCHC 1 cut(s) 48
SfaNI GCATC 1 cut(s) 21
Sfr274I CTCGAG 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SspI AATATT 1 cut(s) 337
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 2 cut(s) 34, 139
StyI CCWWGG 1 cut(s) 408
TaiI ACGT 1 cut(s) 106
TaqI TCGA 1 cut(s) 153
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 3 cut(s) 6, 435, 451
Tru9I TTAA 3 cut(s) 6, 435, 451
TspGWI ACGGA 1 cut(s) 29
Tth111I GACNNNGTC 1 cut(s) 102
XhoI CTCGAG 1 cut(s) 152
XspI CTAG 1 cut(s) 287
ZraI GACGTC 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.