Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

51551813 .. 51552151

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG355600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTGGGGTTTTTCTCGAGTAGGTGAGGGTTTTGAGGAGTGTGCGGCGAGAGAATTGAAGGAAGAGACTGGTCTGGACCTCGACAAGATCGAATTTGTGACCGTGACGAACAACTTGTTCTTGAACGAACCCAAACCGGCGCATTATGTGACGATCTTTATGCGAGCGGTTCTGAAAGATCCCGATCAAGTTCCCCAAACTGTTGAGCCGGACAAGTGTGACGGTTGGGGTTGGTACGAGTGGGACGACCTCCCCAAGCCACTGTTTTGGCCTTTGGAGAAGATGGTGCAGAGTGGGTTTAGTCCTTTTCCAATTCCGGATTCCAATTCAGGGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

112

Amino Acids

12.88

Weight (kDa)

4.37

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	4 - 95	4.3e-13	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	167
AccIII	TCCGGA	1 cut(s)	316
AciI	CCGC	2 cut(s)	44, 167
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	92
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	330
AgsI	TTSAA	2 cut(s)	58, 124
AjuI	GAANNNNNNNTTGG	2 cut(s)	304, 336
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	15
Aor13HI	TCCGGA	1 cut(s)	316
AoxI	GGCC	1 cut(s)	269
ApoI	RAATTY	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	76
BccI	CCATC	1 cut(s)	277
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BcoDI	GTCTC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	76
BsaBI	GATNNNNATC	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	183
BseAI	TCCGGA	1 cut(s)	316
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	50
BsgI	GTGCAG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	271
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	3 cut(s)	137, 209, 317
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	271
BsoBI	CYCGRG	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	316
Bsp143I	GATC	4 cut(s)	87, 153, 178, 184
BspACI	CCGC	2 cut(s)	44, 167
BspANI	GGCC	1 cut(s)	271
BspEI	TCCGGA	1 cut(s)	316
BspPI	GGATC	1 cut(s)	173
BsrBI	CCGCTC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	73
BssAI	RCCGGY	1 cut(s)	136
BssMI	GATC	4 cut(s)	87, 153, 178, 184
Bst4CI	ACNGT	4 cut(s)	103, 202, 224, 264
Bst6I	CTCTTC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	4 cut(s)	90, 156, 181, 187
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	4 cut(s)	87, 153, 178, 184
BstX2I	RGATCY	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	165
CfoI	GCGC	1 cut(s)	142
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	235
CviJI	RGCY	3 cut(s)	208, 259, 271
CviKI_1	RGCY	3 cut(s)	208, 259, 271
CviQI	GTAC	1 cut(s)	235
DpnI	GATC	4 cut(s)	89, 155, 180, 186
DpnII	GATC	4 cut(s)	87, 153, 178, 184
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	15
FaiI	YATR	2 cut(s)	147, 161
FaqI	GGGAC	1 cut(s)	257
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	3 cut(s)	137, 209, 317
HhaI	GCGC	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	3 cut(s)	137, 209, 317
HphI	GGTGA	1 cut(s)	35
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	5 cut(s)	15, 74, 121, 182, 317
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	4 cut(s)	103, 202, 224, 264
HpyCH4V	TGCA	1 cut(s)	289
HspAI	GCGC	1 cut(s)	140
Kpn2I	TCCGGA	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	87, 153, 178, 184
LpnPI	CCDG	6 cut(s)	54, 59, 150, 222, 315, 330
MaeIII	GTNAC	4 cut(s)	97, 103, 148, 218
MalI	GATC	4 cut(s)	89, 155, 180, 186
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	4 cut(s)	87, 153, 178, 184
MboII	GAAGA	2 cut(s)	74, 292
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	4 cut(s)	53, 92, 312, 325
MnlI	CCTC	4 cut(s)	19, 28, 89, 260
MroI	TCCGGA	1 cut(s)	316
MspI	CCGG	3 cut(s)	137, 209, 317
NdeII	GATC	4 cut(s)	87, 153, 178, 184
NmuCI	GTSAC	4 cut(s)	97, 103, 148, 218
PaeR7I	CTCGAG	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 243
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	4 cut(s)	87, 153, 178, 184
Sau96I	GGNCC	1 cut(s)	76
SetI	ASST	3 cut(s)	25, 81, 252
Sfr274I	CTCGAG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	76
SlaI	CTCGAG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	4 cut(s)	53, 92, 312, 325
SsiI	CCGC	2 cut(s)	44, 167
TaaI	ACNGT	4 cut(s)	103, 202, 224, 264
TaqI	TCGA	3 cut(s)	16, 81, 90
TasI	AATT	4 cut(s)	53, 92, 312, 325
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	320
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	4 cut(s)	97, 103, 148, 218
Tsp45I	GTSAC	4 cut(s)	97, 103, 148, 218
TspRI	CASTG	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	92
XhoI	CTCGAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.