Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Forward (+)

29733197 .. 29734139

Gene Structure 943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G303000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGGAAACCAAACGGAAACGGAGGCGGCACCGGTGCCGAGAGTGGCGGTAGTGGTGTGCCTGATCAAAGGGAAAACGGTGCTGTTGGGACGGCGCCGTTCCTCCCTTGGCGACTCCACCTTTTCCCTCCCCGGTGGCCACCTCGAATTCGGTGAGAGCTTCGAGGAGTGTGCAGCAAGAGAAGTGAAGGAGGAAGCTGGTTTGGAGATTAAGAATATAGAGATGATGACGGTGAGAAACAACGTGTTCCTAGACGAGGCCAAGCCATGCCAGTACGTGGGGATTTTCGTGAGGGCAGTTTTGGCAGATGATGATCAAGTGCCCCAAAATGTGGAGCCAAACTTCTGTGACGGATGGGATTGGTACGAATGGGACGCTCTCCCTAAACCACTCTTTTGGCCTCTGGAGGATGCGATTCTGGCCGGATTTAATCCTTTTCATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

149

Amino Acids

16.53

Weight (kDa)

4.54

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	28, 34, 93
AccB7I	CCANNNNNTGG	2 cut(s)	277, 331
AciI	CCGC	2 cut(s)	26, 47
AcoI	YGGCCR	2 cut(s)	136, 420
AcsI	RAATTY	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	94
AfaI	GTAC	2 cut(s)	275, 365
AfiI	CCNNNNNNNGG	3 cut(s)	256, 277, 331
AflIII	ACRYGT	1 cut(s)	243
AgeI	ACCGGT	1 cut(s)	31
AluBI	AGCT	2 cut(s)	159, 197
AluI	AGCT	2 cut(s)	159, 197
AoxI	GGCC	4 cut(s)	136, 258, 398, 420
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	146
AsiGI	ACCGGT	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	96
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	164, 244
BaeGI	GKGCMC	1 cut(s)	324
BalI	TGGCCA	1 cut(s)	138
BanI	GGYRCC	3 cut(s)	28, 34, 93
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	1 cut(s)	348
BceAI	ACGGC	2 cut(s)	81, 107
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BclI	TGATCA	2 cut(s)	63, 313
BcnI	CCSGG	1 cut(s)	132
BfaI	CTAG	1 cut(s)	251
BfoI	RGCGCY	1 cut(s)	97
BisI	GCNGC	2 cut(s)	27, 174
BlsI	GCNGC	2 cut(s)	28, 175
Bme1390I	CCNGG	1 cut(s)	132
BmiI	GGNNCC	4 cut(s)	30, 36, 95, 336
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	400
BpmI	CTGGAG	1 cut(s)	425
BpuMI	CCSGG	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	312
BsaHI	GRCGYC	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	106, 130
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 277, 331
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	271
Bse8I	GATNNNNATC	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	106, 130
BseGI	GGATG	2 cut(s)	359, 415
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	3 cut(s)	256, 277, 331
BseNI	ACTGG	1 cut(s)	271
BseRI	GAGGAG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	324
BseXI	GCAGC	1 cut(s)	185
BsgI	GTGCAG	1 cut(s)	192
BshFI	GGCC	4 cut(s)	138, 260, 400, 422
BshNI	GGYRCC	3 cut(s)	28, 34, 93
BshTI	ACCGGT	1 cut(s)	31
BsiSI	CCGG	3 cut(s)	32, 132, 423
BslFI	GGGAC	2 cut(s)	102, 386
BslI	CCNNNNNNNGG	3 cut(s)	256, 277, 331
BsmFI	GGGAC	2 cut(s)	102, 386
BsnI	GGCC	4 cut(s)	138, 260, 400, 422
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	63, 313
BspACI	CCGC	2 cut(s)	26, 47
BspANI	GGCC	4 cut(s)	138, 260, 400, 422
BspLI	GGNNCC	4 cut(s)	30, 36, 95, 336
BspT107I	GGYRCC	3 cut(s)	28, 34, 93
BsrFI	RCCGGY	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	271
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	106, 130
BssMI	GATC	2 cut(s)	63, 313
BssNI	GRCGYC	1 cut(s)	94
BssT1I	CCWWGG	1 cut(s)	106
Bst4CI	ACNGT	2 cut(s)	79, 232
BstACI	GRCGYC	1 cut(s)	94
BstBAI	YACGTR	1 cut(s)	277
BstENI	CCTNNNNNAGG	1 cut(s)	254
BstF5I	GGATG	2 cut(s)	359, 415
BstH2I	RGCGCY	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	2 cut(s)	66, 316
BstMBI	GATC	2 cut(s)	63, 313
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 419
BstSCI	CCNGG	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	324
BstV1I	GCAGC	1 cut(s)	185
BstXI	CCANNNNNNTGG	1 cut(s)	396
BsuRI	GGCC	4 cut(s)	138, 260, 400, 422
BtsCI	GGATG	2 cut(s)	359, 415
CfoI	GCGC	1 cut(s)	96
Cfr10I	RCCGGY	1 cut(s)	31
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	2 cut(s)	274, 364
CspAI	ACCGGT	1 cut(s)	31
CviAII	CATG	3 cut(s)	267, 440, 444
CviJI	RGCY	8 cut(s)	138, 159, 197, 260, 265, 337, 400, 422
CviKI_1	RGCY	8 cut(s)	138, 159, 197, 260, 265, 337, 400, 422
CviQI	GTAC	2 cut(s)	274, 364
DinI	GGCGCC	1 cut(s)	95
DpnI	GATC	2 cut(s)	65, 315
DpnII	GATC	2 cut(s)	63, 313
EaeI	YGGCCR	2 cut(s)	136, 420
Eco130I	CCWWGG	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	106
EcoT22I	ATGCAT	1 cut(s)	445
EgeI	GGCGCC	1 cut(s)	95
EheI	GGCGCC	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	3 cut(s)	270, 443, 447
FaiI	YATR	4 cut(s)	218, 268, 441, 445
FaqI	GGGAC	2 cut(s)	102, 386
FatI	CATG	3 cut(s)	266, 439, 443
FbaI	TGATCA	2 cut(s)	63, 313
Fnu4HI	GCNGC	2 cut(s)	27, 174
FokI	GGATG	2 cut(s)	366, 422
Fsp4HI	GCNGC	2 cut(s)	27, 174
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	2 cut(s)	27, 174
GsuI	CTGGAG	1 cut(s)	425
HaeII	RGCGCY	1 cut(s)	97
HaeIII	GGCC	4 cut(s)	138, 260, 400, 422
HapII	CCGG	3 cut(s)	32, 132, 423
HgaI	GACGC	1 cut(s)	383
HhaI	GCGC	1 cut(s)	96
Hin1I	GRCGYC	1 cut(s)	94
Hin1II	CATG	3 cut(s)	270, 443, 447
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	2 cut(s)	113, 415
HpaII	CCGG	3 cut(s)	32, 132, 423
HphI	GGTGA	2 cut(s)	164, 244
Hpy188III	TCNNGA	2 cut(s)	289, 404
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	2 cut(s)	79, 232
HpyCH4IV	ACGT	2 cut(s)	243, 276
HpyCH4V	TGCA	2 cut(s)	173, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 419
HpySE526I	ACGT	2 cut(s)	243, 276
Hsp92I	GRCGYC	1 cut(s)	94
Hsp92II	CATG	3 cut(s)	270, 443, 447
HspAI	GCGC	1 cut(s)	94
KasI	GGCGCC	1 cut(s)	93
Ksp22I	TGATCA	2 cut(s)	63, 313
Kzo9I	GATC	2 cut(s)	63, 313
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	8 cut(s)	45, 74, 145, 183, 284, 389, 404, 436
Lsp1109I	GCAGC	1 cut(s)	185
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	2 cut(s)	243, 276
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	2 cut(s)	65, 315
MboI	GATC	2 cut(s)	63, 313
MhlI	GDGCHC	1 cut(s)	324
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	1 cut(s)	146
MluNI	TGGCCA	1 cut(s)	138
Mly113I	GGCGCC	1 cut(s)	94
MlyI	GAGTC	1 cut(s)	107
Mox20I	TGGCCA	1 cut(s)	138
Mph1103I	ATGCAT	1 cut(s)	445
MscI	TGGCCA	1 cut(s)	138
MseI	TTAA	2 cut(s)	210, 429
Msp20I	TGGCCA	1 cut(s)	138
MspI	CCGG	3 cut(s)	32, 132, 423
MspR9I	CCNGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	302, 419
NarI	GGCGCC	1 cut(s)	94
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	63, 313
NlaIII	CATG	3 cut(s)	270, 443, 447
NlaIV	GGNNCC	4 cut(s)	30, 36, 95, 336
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	347
NsiI	ATGCAT	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	415
PflMI	CCANNNNNTGG	2 cut(s)	277, 331
PinAI	ACCGGT	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	28, 175
PleI	GAGTC	1 cut(s)	107
PluTI	GGCGCC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	107
Ppu21I	YACGTR	1 cut(s)	277
PspN4I	GGNNCC	4 cut(s)	30, 36, 95, 336
RsaI	GTAC	2 cut(s)	275, 365
RsaNI	GTAC	2 cut(s)	274, 364
SaqAI	TTAA	2 cut(s)	210, 429
SatI	GCNGC	2 cut(s)	27, 174
Sau3AI	GATC	2 cut(s)	63, 313
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	6 cut(s)	122, 144, 161, 199, 246, 279
SfaNI	GCATC	1 cut(s)	400
SfoI	GGCGCC	1 cut(s)	95
SgrAI	CRCCGGYG	1 cut(s)	31
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	2 cut(s)	26, 47
SspDI	GGCGCC	1 cut(s)	93
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	79, 232
TaiI	ACGT	2 cut(s)	246, 279
TaqI	TCGA	2 cut(s)	144, 162
TasI	AATT	1 cut(s)	146
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	2 cut(s)	210, 429
Tru9I	TTAA	2 cut(s)	210, 429
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	1 cut(s)	428
TspGWI	ACGGA	3 cut(s)	29, 35, 366
Van91I	CCANNNNNTGG	2 cut(s)	277, 331
XagI	CCTNNNNNAGG	1 cut(s)	254
XapI	RAATTY	1 cut(s)	146
XspI	CTAG	1 cut(s)	251
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.