Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

31475640 .. 31476501

Gene Structure 862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTCAACGAGGCGGTAGTTGAAGCTGCGATGCCGGGCAAGGTGCCCAAAGTGGTAGTTGTGGTGTGTTTGTTGAGAGGGAACAAGGTGTTGTTGGGACGGCGCCGCTCATCTCTTGGTGATTCCACATTTTCCCTTCCTGGGGGACACCTCGAGTTTGGTGAGAGCTTTGAGGAGTGTGCAACAAGAGAAGTGAAGGAAGAAACTGGTTTAGACATTGATAAGTTTGAGTTTCTAACAGTCACAAACAACCTGTTCTTGGACAAAGGCGAACCATACCAGTACGTGGTGATTTCTATGCGAGCAGTCTTGGCAGATCATCAACAGCCTCAGAATATTGAGCCAGAATTCTGTGATGGTTGGGGTTGGTATGAGTGGGACAACCTCCCCAAGCCACTCTTTTCGCCCTTGGAAAAAGCAGTTCAGGCTGGATTTAATCCTTTCCCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

150

Amino Acids

16.87

Weight (kDa)

4.76

Isoelectric Point (pI)

54.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	18 - 135	2.6e-19	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	43, 102
AccB7I	CCANNNNNTGG	1 cut(s)	286
AccBSI	CCGCTC	1 cut(s)	108
AciI	CCGC	2 cut(s)	14, 106
AcsI	RAATTY	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	103
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	4 cut(s)	141, 142, 259, 286
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	2 cut(s)	26, 168
AluI	AGCT	2 cut(s)	26, 168
Ama87I	CYCGRG	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	131, 173, 301
AvaI	CYCGRG	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	48
BanI	GGYRCC	2 cut(s)	43, 102
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	106
BisI	GCNGC	2 cut(s)	27, 106
BlsI	GCNGC	2 cut(s)	28, 107
Bme1390I	CCNGG	2 cut(s)	36, 141
BmeT110I	CYCGRG	1 cut(s)	152
BmiI	GGNNCC	2 cut(s)	45, 104
BmrFI	CCNGG	2 cut(s)	36, 141
BmsI	GCATC	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	36
BsaAI	YACGTR	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	140, 408
Bsc4I	CCNNNNNNNGG	4 cut(s)	141, 142, 259, 286
Bse1I	ACTGG	2 cut(s)	211, 280
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	140, 408
BseLI	CCNNNNNNNGG	4 cut(s)	141, 142, 259, 286
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	2 cut(s)	211, 280
BseRI	GAGGAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	13
BshNI	GGYRCC	2 cut(s)	43, 102
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	3 cut(s)	111, 159, 392
BslI	CCNNNNNNNGG	4 cut(s)	141, 142, 259, 286
BsmFI	GGGAC	3 cut(s)	111, 159, 392
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	316
BspACI	CCGC	2 cut(s)	14, 106
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	45, 104
BspT107I	GGYRCC	2 cut(s)	43, 102
BsrBI	CCGCTC	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	211, 280
BssECI	CCNNGG	2 cut(s)	140, 408
BssMI	GATC	1 cut(s)	316
BssNI	GRCGYC	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	241
BstACI	GRCGYC	1 cut(s)	103
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 425
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	2 cut(s)	34, 139
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	13
BtgZI	GCGATG	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	283
CviJI	RGCY	6 cut(s)	26, 168, 328, 343, 394, 428
CviKI_1	RGCY	6 cut(s)	26, 168, 328, 343, 394, 428
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	330
DinI	GGCGCC	1 cut(s)	104
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	408
Eco88I	CYCGRG	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	408
EgeI	GGCGCC	1 cut(s)	104
EheI	GGCGCC	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	408
FaiI	YATR	3 cut(s)	277, 299, 372
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FaqI	GGGAC	3 cut(s)	111, 159, 392
Fnu4HI	GCNGC	2 cut(s)	27, 106
Fsp4HI	GCNGC	2 cut(s)	27, 106
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	2 cut(s)	27, 106
HaeII	RGCGCY	1 cut(s)	106
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	3 cut(s)	131, 173, 301
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	333
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	2 cut(s)	146, 190
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 425
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	103
HspAI	GCGC	1 cut(s)	103
KasI	GGCGCC	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	316
LpnPI	CCDG	9 cut(s)	48, 126, 153, 192, 266, 293, 357, 410, 414
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	1 cut(s)	21
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	318
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	1 cut(s)	316
MboII	GAAGA	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	347
Mly113I	GGCGCC	1 cut(s)	103
MnlI	CCTC	6 cut(s)	4, 71, 161, 166, 339, 395
MseI	TTAA	2 cut(s)	435, 451
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	2 cut(s)	36, 141
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	311, 425
NarI	GGCGCC	1 cut(s)	103
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	1 cut(s)	316
NlaIV	GGNNCC	2 cut(s)	45, 104
NmuCI	GTSAC	1 cut(s)	241
PaeR7I	CTCGAG	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	28, 107
PluTI	GGCGCC	1 cut(s)	106
Ppu21I	YACGTR	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	45, 104
PspXI	VCTCGAGB	1 cut(s)	152
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	435, 451
SatI	GCNGC	2 cut(s)	27, 106
Sau3AI	GATC	1 cut(s)	316
ScrFI	CCNGG	2 cut(s)	36, 141
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	8 cut(s)	28, 45, 90, 153, 170, 255, 288, 387
SfaNI	GCATC	1 cut(s)	21
SfoI	GGCGCC	1 cut(s)	104
Sfr274I	CTCGAG	1 cut(s)	152
SlaI	CTCGAG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	1 cut(s)	347
SsiI	CCGC	2 cut(s)	14, 106
SspDI	GGCGCC	1 cut(s)	102
SspI	AATATT	1 cut(s)	337
StyD4I	CCNGG	2 cut(s)	34, 139
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	347
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	2 cut(s)	435, 451
Tru9I	TTAA	2 cut(s)	435, 451
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	241
Van91I	CCANNNNNTGG	1 cut(s)	286
XapI	RAATTY	1 cut(s)	347
XhoI	CTCGAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.