Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

59565099 .. 59565585

Gene Structure 487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51228

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGGAAACGAGACAGTAGTAGTGGCTGAAACTTCGGGGTCGATAAAAGTGGCGGTGGTAGTATGCCTGTTGAGAGGCCAAAACGTGCTCTTGGGACGGCGCCGCTCCTCTCTGGGAGATTCCACCTTTTCCCTTCCCAGTGGCCACCTCGAGTTTGGAGAGAGCTTTGAGGAGTGTGCAGCATGGGAACTGAAGGAAGAAACTGATTTAGACATTGGCAAGATAGAATTGCTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

79

Amino Acids

8.57

Weight (kDa)

4.58

Isoelectric Point (pI)

59.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	16 - 78	1.4e-11	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	99
AccBSI	CCGCTC	1 cut(s)	105
AciI	CCGC	2 cut(s)	53, 103
AcoI	YGGCCR	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	212
AcyI	GRCGYC	1 cut(s)	100
AluBI	AGCT	1 cut(s)	165
AluI	AGCT	1 cut(s)	165
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	5
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	2 cut(s)	76, 142
ApeKI	GCWGC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	102
AvaI	CYCGRG	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	191
BceAI	ACGGC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	5
BfoI	RGCGCY	1 cut(s)	103
BisI	GCNGC	2 cut(s)	103, 180
BlsI	GCNGC	2 cut(s)	104, 181
BmeT110I	CYCGRG	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	101
BmrI	ACTGGG	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	138
BseRI	GAGGAG	2 cut(s)	97, 185
BseXI	GCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	78, 144
BshNI	GGYRCC	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	90
BsiHKCI	CYCGRG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	108
BsnI	GGCC	2 cut(s)	78, 144
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	90
BspACI	CCGC	2 cut(s)	53, 103
BspANI	GGCC	2 cut(s)	78, 144
BspLI	GGNNCC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	99
BsrBI	CCGCTC	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	138
BssNI	GRCGYC	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	16
BstACI	GRCGYC	1 cut(s)	100
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	102
BstMAI	GTCTC	1 cut(s)	5
BstV1I	GCAGC	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	78, 144
BtsIMutI	CAGTG	1 cut(s)	145
CfoI	GCGC	1 cut(s)	102
CviAII	CATG	1 cut(s)	183
CviJI	RGCY	4 cut(s)	26, 78, 144, 165
CviKI_1	RGCY	4 cut(s)	26, 78, 144, 165
DinI	GGCGCC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	212
Eco88I	CYCGRG	1 cut(s)	149
EgeI	GGCGCC	1 cut(s)	101
EheI	GGCGCC	1 cut(s)	101
FaeI	CATG	1 cut(s)	186
FaiI	YATR	2 cut(s)	64, 184
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	1 cut(s)	182
Fnu4HI	GCNGC	2 cut(s)	103, 180
Fsp4HI	GCNGC	2 cut(s)	103, 180
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	2 cut(s)	103, 180
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	2 cut(s)	78, 144
HhaI	GCGC	1 cut(s)	102
Hin1I	GRCGYC	1 cut(s)	100
Hin1II	CATG	1 cut(s)	186
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HinfI	GANTC	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	143, 187
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	179
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	100
Hsp92II	CATG	1 cut(s)	186
HspAI	GCGC	1 cut(s)	100
KasI	GGCGCC	1 cut(s)	99
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	3 cut(s)	80, 98, 151
Lsp1109I	GCAGC	1 cut(s)	191
MaeII	ACGT	1 cut(s)	84
MbiI	CCGCTC	1 cut(s)	105
MboII	GAAGA	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	90
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	1 cut(s)	227
MluNI	TGGCCA	1 cut(s)	144
Mly113I	GGCGCC	1 cut(s)	100
MnlI	CCTC	4 cut(s)	68, 118, 158, 163
Mox20I	TGGCCA	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	144
Msp20I	TGGCCA	1 cut(s)	144
NarI	GGCGCC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	186
NlaIV	GGNNCC	1 cut(s)	101
PaeR7I	CTCGAG	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	104, 181
PluTI	GGCGCC	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	101
PspXI	VCTCGAGB	1 cut(s)	149
SatI	GCNGC	2 cut(s)	103, 180
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	4 cut(s)	87, 128, 150, 167
SfoI	GGCGCC	1 cut(s)	101
Sfr274I	CTCGAG	1 cut(s)	149
SlaI	CTCGAG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	2 cut(s)	53, 103
SspDI	GGCGCC	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	2 cut(s)	41, 150
TasI	AATT	1 cut(s)	227
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	119
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	179
TspRI	CASTG	1 cut(s)	145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XhoI	CTCGAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.