Rorug02G0370100

Nudix hydrolase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
47235948 .. 47237982
2035 bp
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UTR
Exon/CDS
Intron
Rorug02G0370100.1

Sequence Viewer

Length: 345 bp
ATGACAAAACCTGAAGAAGCTTACTGCTTTAGTTTTACAATAGTAAAAAGATTCACCAATTTAGTCCATAATCTCCTTAAAAGCAGCTCCAGATCTCCATGGAATATTGGAAAGGTGGAAGCCTGGAATCTCATTGGATGTGACATCTTTGCTGTAGGCCAAATTGAAAAACTTCAACTCAAGTCATCAATCACTTCTATTGTTCGTAATACTCCAGCTTTTGAAGAGCAGCTGAAGATTTTCGCCGCATTGAAATACAATGCTCCAACTCCTGAAGAGGACAACTCAGAAGAGGAGATGATCCTCGAAGAAATATTGAATGCCTTCTACCATATCCAAACCTGA

Protein Analysis

114

Amino Acids

13.07

Weight (kDa)

5.16

Isoelectric Point (pI)

74.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000600)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68760
fragaria_vesca FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 246
AclWI GGATC 1 cut(s) 295
AcuI CTGAAG 3 cut(s) 33, 254, 294
AgsI TTSAA 5 cut(s) 167, 176, 224, 253, 319
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 4 cut(s) 20, 87, 218, 232
AluI AGCT 4 cut(s) 20, 87, 218, 232
AlwI GGATC 1 cut(s) 295
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 84, 229
Asp700I GAANNNNTTC 3 cut(s) 171, 239, 323
AsuHPI GGTGA 1 cut(s) 46
BbvI GCAGC 2 cut(s) 96, 241
BciT130I CCWGG 1 cut(s) 124
BfmI CTRYAG 1 cut(s) 153
BglII AGATCT 1 cut(s) 92
BisI GCNGC 3 cut(s) 85, 230, 246
BlsI GCNGC 3 cut(s) 86, 231, 247
Bme1390I CCNGG 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 124
BplI GAGNNNNNCTC 2 cut(s) 269, 301
BpmI CTGGAG 2 cut(s) 73, 198
BpuEI CTTGAG 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 98
BseGI GGATG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 2 cut(s) 96, 241
BshFI GGCC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 92, 300
Bsp19I CCATGG 1 cut(s) 98
BspACI CCGC 1 cut(s) 246
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 299
BspPI GGATC 1 cut(s) 295
BspQI GCTCTTC 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 2 cut(s) 92, 300
BssT1I CCWWGG 1 cut(s) 98
Bst2UI CCWGG 1 cut(s) 124
Bst6I CTCTTC 3 cut(s) 219, 270, 285
BstDEI CTNAG 1 cut(s) 286
BstDSI CCRYGG 1 cut(s) 98
BstF5I GGATG 1 cut(s) 143
BstKTI GATC 2 cut(s) 95, 303
BstMBI GATC 2 cut(s) 92, 300
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 96, 241
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BsuRI GGCC 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 98
BtsCI GGATG 1 cut(s) 143
CviAII CATG 1 cut(s) 99
CviJI RGCY 6 cut(s) 20, 87, 122, 159, 218, 232
CviKI_1 RGCY 6 cut(s) 20, 87, 122, 159, 218, 232
DdeI CTNAG 1 cut(s) 286
DpnI GATC 2 cut(s) 94, 302
DpnII GATC 2 cut(s) 92, 300
Eam1104I CTCTTC 3 cut(s) 219, 270, 285
EarI CTCTTC 3 cut(s) 219, 270, 285
Eco130I CCWWGG 1 cut(s) 98
Eco57I CTGAAG 3 cut(s) 33, 254, 294
EcoRII CCWGG 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 1 cut(s) 102
FaiI YATR 3 cut(s) 69, 100, 333
FatI CATG 1 cut(s) 98
Fnu4HI GCNGC 3 cut(s) 85, 230, 246
FokI GGATG 1 cut(s) 150
Fsp4HI GCNGC 3 cut(s) 85, 230, 246
GluI GCNGC 3 cut(s) 85, 230, 246
GsuI CTGGAG 2 cut(s) 73, 198
HaeIII GGCC 1 cut(s) 159
Hin1II CATG 1 cut(s) 102
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 2 cut(s) 51, 127
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 2 cut(s) 90, 272
HpyAV CCTTC 1 cut(s) 334
HpyF3I CTNAG 1 cut(s) 286
Hsp92II CATG 1 cut(s) 102
Kzo9I GATC 2 cut(s) 92, 300
LguI GCTCTTC 1 cut(s) 219
LmnI GCTCC 2 cut(s) 92, 268
LpnPI CCDG 6 cut(s) 24, 103, 109, 136, 228, 285
Lsp1109I GCAGC 2 cut(s) 96, 241
MaeIII GTNAC 1 cut(s) 140
MalI GATC 2 cut(s) 94, 302
MboI GATC 2 cut(s) 92, 300
MboII GAAGA 6 cut(s) 26, 236, 247, 287, 302, 320
MflI RGATCY 1 cut(s) 92
MluCI AATT 2 cut(s) 58, 162
MmeI TCCRAC 1 cut(s) 290
MnlI CCTC 3 cut(s) 271, 286, 314
MroXI GAANNNNTTC 3 cut(s) 171, 239, 323
MseI TTAA 1 cut(s) 78
MspA1I CMGCKG 1 cut(s) 232
MspR9I CCNGG 1 cut(s) 124
Mva1269I GAATGC 1 cut(s) 325
MvaI CCWGG 1 cut(s) 124
NcoI CCATGG 1 cut(s) 98
NdeII GATC 2 cut(s) 92, 300
NlaIII CATG 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 140
PciSI GCTCTTC 1 cut(s) 219
PctI GAATGC 1 cut(s) 325
PdmI GAANNNNTTC 3 cut(s) 171, 239, 323
PfeI GAWTC 2 cut(s) 51, 127
PkrI GCNGC 3 cut(s) 86, 231, 247
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 232
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 3 cut(s) 85, 230, 246
Sau3AI GATC 2 cut(s) 92, 300
ScrFI CCNGG 1 cut(s) 124
SetI ASST 7 cut(s) 13, 22, 89, 117, 220, 234, 344
SfcI CTRYAG 1 cut(s) 153
SgeI CNNG 9 cut(s) 23, 102, 111, 135, 136, 193, 227, 284, 317
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 2 cut(s) 58, 162
SsiI CCGC 1 cut(s) 246
SspI AATATT 2 cut(s) 106, 315
StyD4I CCNGG 1 cut(s) 122
StyI CCWWGG 1 cut(s) 98
TaqI TCGA 1 cut(s) 306
TasI AATT 2 cut(s) 58, 162
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 2 cut(s) 51, 127
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 2 cut(s) 84, 229
Tsp45I GTSAC 1 cut(s) 140
XmnI GAANNNNTTC 3 cut(s) 171, 239, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.