Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

57843829 .. 57844715

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00377340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGATACGAGACAGTAGTAGTGGCTGAAACTGCGGGGTCGATAAAAGTGGCGGTGGTAGTGTGCCTGTTGAGAGGCCAAAACGTGCTCTTGGGACAGCGCCGCTCCTCTCTCGGAGATTCCACCTTTTCACTCCCCAGTGGCCACCTTGAATGTGGCGAGAGCTTTCAGGAGTGTGCAGCAAGGGAATTGAAGGAACAAACTGGTTTAGACATTGACAAGATAGAGTTGCTAACTGTGACCAATAATCTGTTCCTAGACGAAGCCAAACCATCGCAGTACGTGGCTGTTTTCATGAGAGCAGTGCTGGCAGATCCTCGTCAAGAGCCCCAGAATATTGAACCAGAATTCTGTGATGGTTGGGGATGGTATGAATGGGACAATCTCCCGAAGCCACTTTTCTGGCCTTTGGAGAAAGTGGTGCAGGATGGATTTAACCCTTTTCCAACATTAGACAGCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

154

Amino Acids

17.21

Weight (kDa)

4.42

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	16 - 141	9.6e-19	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	105
AciI	CCGC	3 cut(s)	35, 53, 103
AclWI	GGATC	1 cut(s)	308
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	347
AfaI	GTAC	1 cut(s)	281
AgsI	TTSAA	3 cut(s)	152, 193, 341
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	2 cut(s)	165, 459
AluI	AGCT	2 cut(s)	165, 459
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	3 cut(s)	76, 142, 404
ApeKI	GCWGC	2 cut(s)	179, 459
ApoI	RAATTY	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	102
BalI	TGGCCA	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	191, 446
BccI	CCATC	4 cut(s)	280, 350, 360, 422
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	2 cut(s)	257, 463
BfoI	RGCGCY	1 cut(s)	103
BisI	GCNGC	3 cut(s)	103, 180, 460
BlsI	GCNGC	3 cut(s)	104, 181, 461
BmrI	ACTGGG	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	283
Bse1I	ACTGG	2 cut(s)	138, 208
BseGI	GGATG	2 cut(s)	371, 433
BseNI	ACTGG	2 cut(s)	138, 208
BseRI	GAGGAG	1 cut(s)	97
BseXI	GCAGC	2 cut(s)	191, 446
BsgI	GTGCAG	2 cut(s)	198, 443
BshFI	GGCC	3 cut(s)	78, 144, 406
BsiHKAI	GWGCWC	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	108, 392
BsmAI	GTCTC	1 cut(s)	5
BsmFI	GGGAC	2 cut(s)	108, 392
BsnI	GGCC	3 cut(s)	78, 144, 406
Bsp1286I	GDGCHC	2 cut(s)	90, 330
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	3 cut(s)	35, 53, 103
BspANI	GGCC	3 cut(s)	78, 144, 406
BspHI	TCATGA	1 cut(s)	294
BspPI	GGATC	1 cut(s)	308
BsrBI	CCGCTC	1 cut(s)	105
BsrI	ACTGG	2 cut(s)	138, 208
BssMI	GATC	1 cut(s)	313
Bst4CI	ACNGT	2 cut(s)	16, 238
BstBAI	YACGTR	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	309
BstF5I	GGATG	2 cut(s)	371, 433
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 308
BstV1I	GCAGC	2 cut(s)	191, 446
BstX2I	RGATCY	1 cut(s)	313
BstXI	CCANNNNNNTGG	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	3 cut(s)	78, 144, 406
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	371, 433
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	145, 309
Cac8I	GCNNGC	1 cut(s)	309
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	1 cut(s)	295
CviQI	GTAC	1 cut(s)	280
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	330
EcoRI	GAATTC	1 cut(s)	347
EcoT38I	GRGCYC	1 cut(s)	330
FaeI	CATG	1 cut(s)	298
FaiI	YATR	2 cut(s)	296, 372
FaqI	GGGAC	2 cut(s)	108, 392
FatI	CATG	1 cut(s)	294
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	3 cut(s)	103, 180, 460
FokI	GGATG	2 cut(s)	378, 440
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	3 cut(s)	103, 180, 460
FspBI	CTAG	2 cut(s)	257, 463
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	3 cut(s)	103, 180, 460
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	3 cut(s)	78, 144, 406
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HinfI	GANTC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	4 cut(s)	170, 295, 323, 388
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	2 cut(s)	16, 238
HpyCH4IV	ACGT	2 cut(s)	84, 282
HpyCH4V	TGCA	2 cut(s)	179, 424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 308
HpySE526I	ACGT	2 cut(s)	84, 282
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	9 cut(s)	80, 151, 155, 189, 293, 344, 357, 388, 410
Lsp1109I	GCAGC	2 cut(s)	191, 446
MaeI	CTAG	2 cut(s)	257, 463
MaeII	ACGT	2 cut(s)	84, 282
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	315
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	1 cut(s)	313
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	2 cut(s)	90, 330
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	2 cut(s)	188, 347
MluNI	TGGCCA	1 cut(s)	144
MnlI	CCTC	3 cut(s)	68, 118, 327
Mox20I	TGGCCA	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	1 cut(s)	435
Msp20I	TGGCCA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	459
MwoI	GCNNNNNNNGC	2 cut(s)	32, 308
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	238
PagI	TCATGA	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	104, 181, 461
Ppu21I	YACGTR	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	459
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	3 cut(s)	103, 180, 460
Sau3AI	GATC	1 cut(s)	313
SduI	GDGCHC	2 cut(s)	90, 330
SetI	ASST	6 cut(s)	87, 128, 150, 167, 285, 461
Sse9I	AATT	2 cut(s)	188, 347
SsiI	CCGC	3 cut(s)	35, 53, 103
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	2 cut(s)	257, 463
TaaI	ACNGT	2 cut(s)	16, 238
TaiI	ACGT	2 cut(s)	87, 285
TaqI	TCGA	1 cut(s)	41
TasI	AATT	2 cut(s)	188, 347
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	2 cut(s)	145, 309
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	2 cut(s)	179, 459
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	283, 387
TspRI	CASTG	2 cut(s)	145, 309
XapI	RAATTY	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XspI	CTAG	2 cut(s)	257, 463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.