Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

57770626 .. 57776122

Gene Structure 5497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00377250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAAAATGAGGCGGTAGCAGCTGAGAGTACTGCAGTGCCTAAGGTGGCAGTGGTGGTCTGCCTGCTGAGGGGGAAAACAGTTCTGTTGGGACGACGTCGCTCCTTTCTTGGCAACTCAACCTTTTCTCTCCCTGGAGGTCACCTCGAGTTCGGTGAGAGCTTTGAGGAGTGTGCGACCAGAGAAGTGAAGGAAGAGACTGGTTTGGACATTGACAAGATAGAATTGCTAACAGTCACTAACAATCTGTTTGTAGACGAACCCAAACCATTGCAGTACGTTGCAATTTTCATGCGAGCAGTGCTGGCCTATCCTGATCAAGTTCCTCAGAATGTTGAGCCAGAAATGTGTGATGGATGGGATTGGTACGACTGGAAGAGCCTCCCAAAACCACTCTTTTGGCCTTTGGAGAAAGTGGTGCAAGGTGGGTTCAATCCGTTCCCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

149

Amino Acids

16.78

Weight (kDa)

4.67

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	15 - 137	7.8e-21	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	1 cut(s)	14
AcyI	GRCGYC	1 cut(s)	97
AfaI	GTAC	3 cut(s)	31, 278, 368
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	2 cut(s)	23, 162
AluI	AGCT	2 cut(s)	23, 162
Alw26I	GTCTC	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	2 cut(s)	306, 401
ApeKI	GCWGC	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	134, 167
AvaI	CYCGRG	1 cut(s)	146
AxyI	CCTNAGG	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	2 cut(s)	347, 351
BciT130I	CCWGG	1 cut(s)	135
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	33
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	135
BmeT110I	CYCGRG	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	129, 161
BpmI	CTGGAG	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	205, 377
Bse21I	CCTNAGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	362
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	269
BseMII	CTCAG	3 cut(s)	15, 59, 341
BseNI	ACTGG	2 cut(s)	205, 377
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	32
BshFI	GGCC	2 cut(s)	308, 403
BsiHKCI	CYCGRG	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	2 cut(s)	308, 403
BsoBI	CYCGRG	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	316
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	308, 403
BspCNI	CTCAG	3 cut(s)	16, 60, 340
BspMAI	CTGCAG	1 cut(s)	37
BspQI	GCTCTTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	205, 377
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	316
BssNI	GRCGYC	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	82, 235
Bst6I	CTCTTC	2 cut(s)	189, 371
BstACI	GRCGYC	1 cut(s)	97
BstC8I	GCNNGC	3 cut(s)	65, 297, 306
BstDEI	CTNAG	4 cut(s)	24, 42, 68, 327
BstEII	GGTNACC	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	362
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 301, 305
BstNI	CCWGG	1 cut(s)	135
BstPI	GGTNACC	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	32
BstXI	CCANNNNNNTGG	1 cut(s)	399
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	308, 403
BtsCI	GGATG	1 cut(s)	362
BtsI	GCAGTG	3 cut(s)	42, 57, 306
BtsIMutI	CAGTG	3 cut(s)	42, 57, 306
Cac8I	GCNNGC	3 cut(s)	65, 297, 306
Csp6I	GTAC	3 cut(s)	30, 277, 367
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	6 cut(s)	23, 162, 308, 340, 381, 403
CviKI_1	RGCY	6 cut(s)	23, 162, 308, 340, 381, 403
CviQI	GTAC	3 cut(s)	30, 277, 367
DdeI	CTNAG	4 cut(s)	24, 42, 68, 327
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
Eam1104I	CTCTTC	2 cut(s)	189, 371
EarI	CTCTTC	2 cut(s)	189, 371
Eco81I	CCTNAGG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	146
Eco91I	GGTNACC	1 cut(s)	140
EcoO65I	GGTNACC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	133
FaeI	CATG	1 cut(s)	295
FaiI	YATR	1 cut(s)	293
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	369
Fsp4HI	GCNGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	308, 403
Hin1I	GRCGYC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	295
HphI	GGTGA	2 cut(s)	134, 167
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	1 cut(s)	314
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	2 cut(s)	99, 102
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	2 cut(s)	82, 235
HpyCH4IV	ACGT	2 cut(s)	97, 279
HpyCH4V	TGCA	4 cut(s)	35, 274, 284, 421
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 301, 305
HpyF3I	CTNAG	4 cut(s)	24, 42, 68, 327
HpySE526I	ACGT	2 cut(s)	97, 279
Hsp92I	GRCGYC	1 cut(s)	97
Hsp92II	CATG	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	316
LguI	GCTCTTC	1 cut(s)	371
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	9 cut(s)	77, 120, 147, 186, 193, 290, 327, 354, 358
Lsp1109I	GCAGC	1 cut(s)	32
MaeII	ACGT	2 cut(s)	97, 279
MaeIII	GTNAC	2 cut(s)	140, 235
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	2 cut(s)	206, 388
MluCI	AATT	3 cut(s)	224, 285, 445
MnlI	CCTC	7 cut(s)	4, 63, 131, 155, 160, 336, 392
MseI	TTAA	1 cut(s)	448
MspA1I	CMGCKG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	3 cut(s)	20, 301, 305
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	1 cut(s)	295
NmuCI	GTSAC	2 cut(s)	140, 235
PaeR7I	CTCGAG	1 cut(s)	146
PciSI	GCTCTTC	1 cut(s)	371
PflFI	GACNNNGTC	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	133
PspEI	GGTNACC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	133
PspXI	VCTCGAGB	1 cut(s)	146
PstI	CTGCAG	1 cut(s)	37
PsyI	GACNNNGTC	1 cut(s)	96
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	3 cut(s)	31, 278, 368
RsaNI	GTAC	3 cut(s)	30, 277, 367
SapI	GCTCTTC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	448
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	316
ScaI	AGTACT	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	9 cut(s)	25, 48, 100, 125, 142, 147, 164, 282, 427
SfcI	CTRYAG	1 cut(s)	33
Sfr274I	CTCGAG	1 cut(s)	146
SlaI	CTCGAG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	3 cut(s)	224, 285, 445
SsiI	CCGC	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	133
TaaI	ACNGT	2 cut(s)	82, 235
TaiI	ACGT	2 cut(s)	100, 282
TaqI	TCGA	1 cut(s)	147
TasI	AATT	3 cut(s)	224, 285, 445
TatI	WGTACW	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	448
Tru9I	TTAA	1 cut(s)	448
TscAI	CASTG	3 cut(s)	42, 57, 306
TseFI	GTSAC	2 cut(s)	140, 235
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	2 cut(s)	140, 235
TspDTI	ATGAA	1 cut(s)	280
TspGWI	ACGGA	1 cut(s)	426
TspRI	CASTG	3 cut(s)	42, 57, 306
Tth111I	GACNNNGTC	1 cut(s)	96
XhoI	CTCGAG	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	98
ZrmI	AGTACT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.