Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

62433819 .. 62439904

Gene Structure 6086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG370100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCAATGCTTTCCAGCAGCGGTGGTGGTACCAACTTCTTCGGCTGCGTTAATTTGATGAAGAAGTCCATAGATCAAAAGAATGGGAAACGCGAGACAGTAGTAGTGGCTGAAACTGTGGGGTCGATAAAAGTGGCGGTGGTAGTGTGCCTGTTGAGAGGCCAAAACGTGCTCTTGGGACGGCGCCGCTCCTCTCTCGGAGATTCCACCTTTTCACTCCCCAGTGGCCACCTTGAATTTGGCGAGAGCTTTCAGGAGTGTGCAGCAAGGGAATTGAAGGAAGAAACTGGTTTAGACATTGACAAGATAGAGTTGCTAACTGTGACCAATAACCTGTTCCTAGACGAAGCCAAACCATCGCAGTACGTGGCTGTTTTCATGAGAGCAGTGCTGGCAGATCCTCGTCAAGAGCCCCAAAATATTGAACCAGAATTCTGTGATGGTTGGGGATGGTATGAATGGGACAATCTCCCGAAGCCACTTTTCTGGCCTTTGGAGAAAGTGGTGCAGGATGGATTTAACCCTTTTCCAACATTAGACAGCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

182

Amino Acids

20.25

Weight (kDa)

4.81

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	44 - 169	2.2e-19	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	29
AccB1I	GGYRCC	2 cut(s)	29, 183
AccBSI	CCGCTC	1 cut(s)	189
AccII	CGCG	1 cut(s)	93
AciI	CCGC	3 cut(s)	21, 137, 187
AclWI	GGATC	1 cut(s)	392
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	2 cut(s)	236, 431
AcyI	GRCGYC	1 cut(s)	184
AfaI	GTAC	2 cut(s)	31, 365
AgsI	TTSAA	3 cut(s)	236, 277, 425
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
AluBI	AGCT	2 cut(s)	249, 543
AluI	AGCT	2 cut(s)	249, 543
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	392
AoxI	GGCC	3 cut(s)	160, 226, 488
ApeKI	GCWGC	4 cut(s)	18, 45, 263, 543
ApoI	RAATTY	2 cut(s)	236, 431
Asp718I	GGTACC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	186
BalI	TGGCCA	1 cut(s)	228
BanI	GGYRCC	2 cut(s)	29, 183
BanII	GRGCYC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	4 cut(s)	30, 32, 275, 530
BccI	CCATC	4 cut(s)	364, 434, 444, 506
BceAI	ACGGC	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	2 cut(s)	341, 547
BfoI	RGCGCY	1 cut(s)	187
BisI	GCNGC	5 cut(s)	19, 46, 187, 264, 544
BlsI	GCNGC	5 cut(s)	20, 47, 188, 265, 545
BmiI	GGNNCC	2 cut(s)	31, 185
BmrI	ACTGGG	1 cut(s)	216
BmuI	ACTGGG	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	367
BsaHI	GRCGYC	1 cut(s)	184
Bse1I	ACTGG	2 cut(s)	222, 292
Bse3DI	GCAATG	1 cut(s)	12
BseGI	GGATG	2 cut(s)	455, 517
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	222, 292
BseRI	GAGGAG	1 cut(s)	181
BseXI	GCAGC	4 cut(s)	30, 32, 275, 530
BsgI	GTGCAG	2 cut(s)	282, 527
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	3 cut(s)	162, 228, 490
BshNI	GGYRCC	2 cut(s)	29, 183
BsiHKAI	GWGCWC	1 cut(s)	174
BslFI	GGGAC	2 cut(s)	192, 476
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	2 cut(s)	192, 476
BsnI	GGCC	3 cut(s)	162, 228, 490
Bsp1286I	GDGCHC	2 cut(s)	174, 414
Bsp143I	GATC	2 cut(s)	73, 397
BspACI	CCGC	3 cut(s)	21, 137, 187
BspANI	GGCC	3 cut(s)	162, 228, 490
BspFNI	CGCG	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	2 cut(s)	31, 185
BspPI	GGATC	1 cut(s)	392
BspT107I	GGYRCC	2 cut(s)	29, 183
BsrBI	CCGCTC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	222, 292
BssMI	GATC	2 cut(s)	73, 397
BssNI	GRCGYC	1 cut(s)	184
Bst4CI	ACNGT	3 cut(s)	100, 118, 322
BstACI	GRCGYC	1 cut(s)	184
BstBAI	YACGTR	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	393
BstF5I	GGATG	2 cut(s)	455, 517
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	2 cut(s)	76, 400
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	2 cut(s)	73, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	4 cut(s)	30, 32, 275, 530
BstX2I	RGATCY	1 cut(s)	397
BstXI	CCANNNNNNTGG	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	397
BsuRI	GGCC	3 cut(s)	162, 228, 490
BtgZI	GCGATG	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	455, 517
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	229, 393
Cac8I	GCNNGC	1 cut(s)	393
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	30, 364
CviAII	CATG	1 cut(s)	379
CviQI	GTAC	2 cut(s)	30, 364
DinI	GGCGCC	1 cut(s)	185
DpnI	GATC	2 cut(s)	75, 399
DpnII	GATC	2 cut(s)	73, 397
EaeI	YGGCCR	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	414
EcoRI	GAATTC	1 cut(s)	431
EcoT38I	GRGCYC	1 cut(s)	414
EgeI	GGCGCC	1 cut(s)	185
EheI	GGCGCC	1 cut(s)	185
FaeI	CATG	1 cut(s)	382
FaiI	YATR	3 cut(s)	71, 380, 456
FaqI	GGGAC	2 cut(s)	192, 476
FatI	CATG	1 cut(s)	378
Fnu4HI	GCNGC	5 cut(s)	19, 46, 187, 264, 544
FokI	GGATG	2 cut(s)	462, 524
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	5 cut(s)	19, 46, 187, 264, 544
FspBI	CTAG	2 cut(s)	341, 547
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	5 cut(s)	19, 46, 187, 264, 544
HaeII	RGCGCY	1 cut(s)	187
HaeIII	GGCC	3 cut(s)	162, 228, 490
HhaI	GCGC	1 cut(s)	186
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	200
Hpy188III	TCNNGA	4 cut(s)	254, 379, 407, 472
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	3 cut(s)	100, 118, 322
HpyCH4IV	ACGT	2 cut(s)	168, 366
HpyCH4V	TGCA	2 cut(s)	263, 508
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpySE526I	ACGT	2 cut(s)	168, 366
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	1 cut(s)	184
KasI	GGCGCC	1 cut(s)	183
KpnI	GGTACC	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	73, 397
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	4 cut(s)	30, 32, 275, 530
MaeI	CTAG	2 cut(s)	341, 547
MaeII	ACGT	2 cut(s)	168, 366
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	2 cut(s)	75, 399
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	2 cut(s)	73, 397
MboII	GAAGA	3 cut(s)	31, 73, 293
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	2 cut(s)	174, 414
MlsI	TGGCCA	1 cut(s)	228
MluCI	AATT	4 cut(s)	52, 236, 272, 431
MluNI	TGGCCA	1 cut(s)	228
Mly113I	GGCGCC	1 cut(s)	184
MnlI	CCTC	3 cut(s)	152, 202, 411
Mox20I	TGGCCA	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	228
MseI	TTAA	2 cut(s)	51, 519
Msp20I	TGGCCA	1 cut(s)	228
MspA1I	CMGCKG	2 cut(s)	21, 543
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	392
NarI	GGCGCC	1 cut(s)	184
NdeII	GATC	2 cut(s)	73, 397
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	2 cut(s)	31, 185
NmuCI	GTSAC	1 cut(s)	322
PagI	TCATGA	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	5 cut(s)	20, 47, 188, 265, 545
PluTI	GGCGCC	1 cut(s)	187
Ppu21I	YACGTR	1 cut(s)	367
PspN4I	GGNNCC	2 cut(s)	31, 185
PsuI	RGATCY	1 cut(s)	397
PvuII	CAGCTG	1 cut(s)	543
RsaI	GTAC	2 cut(s)	31, 365
RsaNI	GTAC	2 cut(s)	30, 364
SaqAI	TTAA	2 cut(s)	51, 519
SatI	GCNGC	5 cut(s)	19, 46, 187, 264, 544
Sau3AI	GATC	2 cut(s)	73, 397
SduI	GDGCHC	2 cut(s)	174, 414
SetI	ASST	7 cut(s)	171, 212, 234, 251, 336, 369, 545
SfoI	GGCGCC	1 cut(s)	185
Sse9I	AATT	4 cut(s)	52, 236, 272, 431
SsiI	CCGC	3 cut(s)	21, 137, 187
SspDI	GGCGCC	1 cut(s)	183
SspI	AATATT	1 cut(s)	421
SspMI	CTAG	2 cut(s)	341, 547
TaaI	ACNGT	3 cut(s)	100, 118, 322
TaiI	ACGT	2 cut(s)	171, 369
TaqI	TCGA	1 cut(s)	125
TasI	AATT	4 cut(s)	52, 236, 272, 431
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	51, 519
Tru9I	TTAA	2 cut(s)	51, 519
TscAI	CASTG	2 cut(s)	229, 393
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	4 cut(s)	18, 45, 263, 543
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	3 cut(s)	74, 367, 471
TspRI	CASTG	2 cut(s)	229, 393
XapI	RAATTY	2 cut(s)	236, 431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XspI	CTAG	2 cut(s)	341, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.