Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

51539189 .. 51551322

Gene Structure 12134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG355500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCTGCTGCCACACAAACATGCTAAGCCGCCCCCATATTGCCCAACAACCTGGGAATACAAGCACTACTCATTTCCCTTACTTCTACCTCGGCTAAAGGCCTCCGAAGCGACTACGAGAGAGAGCTTTGAGGAGTGTGCAGCAAGGGAACTGAAGGAAGAAACTGGTTTAGACATTGGAAAGATAGAATTGCTAACTGTGACCAACAACCTGTTCCTAGACGAAGCCAAACCATCGCAGTACGTGGCTGTTTTCATGAGAGCAGTGCTGGCAGATCCTCGTCAAGAGCCCCAGAATATTGAGCCAGAATTCTGTGATGGTTGGGGATGGTATGAGTGGGACAATCTTCCGAAGCCACTCTTCTGGCCTTTGGAGAAAGTGGTTCAGGATGGATTTAACCCTTTTCCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

137

Amino Acids

15.95

Weight (kDa)

4.96

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	40 - 128	1.5e-10	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	50
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	1 cut(s)	126
AluI	AGCT	1 cut(s)	126
AlwI	GGATC	1 cut(s)	269
AoxI	GGCC	2 cut(s)	99, 365
ApeKI	GCWGC	3 cut(s)	4, 7, 140
ApoI	RAATTY	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	4 cut(s)	241, 311, 321, 383
BciT130I	CCWGG	1 cut(s)	52
BfaI	CTAG	1 cut(s)	218
BisI	GCNGC	4 cut(s)	5, 8, 29, 141
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	4 cut(s)	6, 9, 30, 142
Bme1390I	CCNGG	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	52
Bpu1102I	GCTNAGC	1 cut(s)	24
BsaAI	YACGTR	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	51, 89
Bse1I	ACTGG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	2 cut(s)	51, 89
BseGI	GGATG	2 cut(s)	332, 394
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	101, 367
BslFI	GGGAC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	2 cut(s)	101, 367
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	1 cut(s)	274
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	2 cut(s)	101, 367
BspHI	TCATGA	1 cut(s)	255
BspPI	GGATC	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	51, 89
BssMI	GATC	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	365
BstBAI	YACGTR	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	332, 394
BstKTI	GATC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 269
BstNI	CCWGG	1 cut(s)	52
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	274
BstXI	CCANNNNNNTGG	2 cut(s)	51, 363
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	2 cut(s)	101, 367
BtgZI	GCGATG	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	332, 394
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	270
CciI	TCATGA	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	3 cut(s)	20, 256, 411
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
Eco147I	AGGCCT	1 cut(s)	101
Eco24I	GRGCYC	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	291
FaeI	CATG	3 cut(s)	23, 259, 414
FaiI	YATR	5 cut(s)	21, 37, 257, 333, 412
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	3 cut(s)	19, 255, 410
Fnu4HI	GCNGC	4 cut(s)	5, 8, 29, 141
FokI	GGATG	2 cut(s)	339, 401
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	4 cut(s)	5, 8, 29, 141
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	4 cut(s)	5, 8, 29, 141
HaeIII	GGCC	2 cut(s)	101, 367
Hin1II	CATG	3 cut(s)	23, 259, 414
Hpy188I	TCNGA	2 cut(s)	106, 351
Hpy188III	TCNNGA	3 cut(s)	256, 284, 386
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 269
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	23, 259, 414
Kzo9I	GATC	1 cut(s)	274
LpnPI	CCDG	9 cut(s)	37, 64, 150, 224, 254, 305, 318, 349, 371
Lsp1109I	GCAGC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	218
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	3 cut(s)	170, 338, 352
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	2 cut(s)	188, 308
MnlI	CCTC	4 cut(s)	99, 112, 124, 288
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	107, 269
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	3 cut(s)	23, 259, 414
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	23
PagI	TCATGA	1 cut(s)	255
PceI	AGGCCT	1 cut(s)	101
PkrI	GCNGC	4 cut(s)	6, 9, 30, 142
Ppu21I	YACGTR	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	4 cut(s)	5, 8, 29, 141
Sau3AI	GATC	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	5 cut(s)	53, 91, 128, 213, 246
SmiMI	CAYNNNNRTG	1 cut(s)	18
Sse9I	AATT	2 cut(s)	188, 308
SseBI	AGGCCT	1 cut(s)	101
SsiI	CCGC	1 cut(s)	29
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	1 cut(s)	218
StuI	AGGCCT	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	50
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	246
TasI	AATT	2 cut(s)	188, 308
TauI	GCSGC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	3 cut(s)	4, 7, 140
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	244
TspRI	CASTG	1 cut(s)	270
XapI	RAATTY	1 cut(s)	308
XceI	RCATGY	1 cut(s)	23
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.