Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Forward (+)

29720835 .. 29722003

Gene Structure 1169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G302800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAAAACGGTACGACGATCGCCGCGGTGCCGAGAGTGGCTGTGGTGGTGTTTCTGTTGAGAGGGAAAGCGGTGCTGTTGGGACGGCGGCGATCCTCTGTGGGCGATTCCACCTTTGCCCTCCCTGGTGGCCACCTCGAGTTCGGAGAGAGCTTTGAGGAGTGTGCGGCGAGAGAATTGAAGGAAGAAACTGGTATGGACTTTGACAAGAAGAAGATGGAGTTGCTGACGGTCACAAACAATGTGTTCTCAGAGCAGCCGAAGCCGTCTCATTACGTGACGGTTTTCATGCGTGGAGTTTTGGCAGATGGCGATGATCAATTGCCCCAAAATCTTGAGCCCACCAAGTGTGACGGTTGGGATTGGTACGATTGGGCCAACCTCCCCGAACCCCTCTTTTGGCCTTTGGAGAAGATGGTGAAGAGTGGCTTTAACCCTTTTCCCAATTCACCACAAGAAGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

156

Amino Acids

17.45

Weight (kDa)

4.77

Isoelectric Point (pI)

60.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	28
AccII	CGCG	1 cut(s)	26
AciI	CCGC	5 cut(s)	24, 26, 71, 88, 167
AclWI	GGATC	1 cut(s)	87
AcoI	YGGCCR	1 cut(s)	130
AdeI	CACNNNGTG	1 cut(s)	348
AfaI	GTAC	2 cut(s)	13, 368
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	87
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	3 cut(s)	130, 375, 401
ApeKI	GCWGC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	375
AsuHPI	GGTGA	2 cut(s)	430, 441
AvaI	CYCGRG	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	3 cut(s)	211, 302, 409
BceAI	ACGGC	2 cut(s)	101, 250
BciT130I	CCWGG	1 cut(s)	126
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	273
BisI	GCNGC	4 cut(s)	24, 89, 168, 257
BlsI	GCNGC	4 cut(s)	25, 90, 169, 258
Bme1390I	CCNGG	1 cut(s)	126
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	375
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	24, 124
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse1I	ACTGG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	24, 124
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	268
Bsh1236I	CGCG	1 cut(s)	26
Bsh1285I	CGRYCG	1 cut(s)	21
BshFI	GGCC	3 cut(s)	132, 377, 403
BshNI	GGYRCC	1 cut(s)	28
BsiEI	CGRYCG	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmAI	GTCTC	1 cut(s)	273
BsmBI	CGTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	3 cut(s)	132, 377, 403
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	3 cut(s)	18, 92, 316
BspACI	CCGC	5 cut(s)	24, 26, 71, 88, 167
BspANI	GGCC	3 cut(s)	132, 377, 403
BspCNI	CTCAG	1 cut(s)	263
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	24, 124
BssMI	GATC	3 cut(s)	18, 92, 316
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	4 cut(s)	11, 232, 283, 356
Bst6I	CTCTTC	1 cut(s)	416
BstBAI	YACGTR	1 cut(s)	277
BstDEI	CTNAG	1 cut(s)	250
BstDSI	CCRYGG	1 cut(s)	24
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	3 cut(s)	21, 95, 319
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	3 cut(s)	18, 92, 316
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	268
BsuRI	GGCC	3 cut(s)	132, 377, 403
BtgI	CCRYGG	1 cut(s)	24
BtgZI	GCGATG	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	375
Cfr42I	CCGCGG	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	12, 367
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	9 cut(s)	41, 132, 153, 259, 265, 340, 377, 403, 429
CviKI_1	RGCY	9 cut(s)	41, 132, 153, 259, 265, 340, 377, 403, 429
CviQI	GTAC	2 cut(s)	12, 367
DdeI	CTNAG	1 cut(s)	250
DpnI	GATC	3 cut(s)	20, 94, 318
DpnII	GATC	3 cut(s)	18, 92, 316
DraIII	CACNNNGTG	1 cut(s)	348
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	273
FaeI	CATG	1 cut(s)	292
FaiI	YATR	2 cut(s)	197, 290
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	4 cut(s)	24, 89, 168, 257
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	4 cut(s)	24, 89, 168, 257
GluI	GCNGC	4 cut(s)	24, 89, 168, 257
HaeIII	GGCC	3 cut(s)	132, 377, 403
Hin1II	CATG	1 cut(s)	292
HinfI	GANTC	1 cut(s)	107
HphI	GGTGA	2 cut(s)	430, 441
Hpy188I	TCNGA	2 cut(s)	146, 253
Hpy188III	TCNNGA	1 cut(s)	335
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	4 cut(s)	11, 232, 283, 356
HpyCH4IV	ACGT	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	1 cut(s)	250
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	1 cut(s)	292
Ksp22I	TGATCA	1 cut(s)	316
KspI	CCGCGG	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	18, 92, 316
LpnPI	CCDG	3 cut(s)	111, 138, 177
Lsp1109I	GCAGC	1 cut(s)	268
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	3 cut(s)	232, 277, 350
MalI	GATC	3 cut(s)	20, 94, 318
MboI	GATC	3 cut(s)	18, 92, 316
MboII	GAAGA	5 cut(s)	197, 223, 226, 424, 433
MfeI	CAATTG	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	342
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	3 cut(s)	176, 320, 445
MluNI	TGGCCA	1 cut(s)	132
MnlI	CCTC	7 cut(s)	56, 106, 131, 146, 151, 392, 404
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	432
Msp20I	TGGCCA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	126
MunI	CAATTG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeII	GATC	3 cut(s)	18, 92, 316
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	30
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	3 cut(s)	232, 277, 350
PaeR7I	CTCGAG	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	4 cut(s)	25, 90, 169, 258
Ple19I	CGATCG	1 cut(s)	21
Ppu21I	YACGTR	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	375
PspXI	VCTCGAGB	1 cut(s)	137
PvuI	CGATCG	1 cut(s)	21
RsaI	GTAC	2 cut(s)	13, 368
RsaNI	GTAC	2 cut(s)	12, 367
SacII	CCGCGG	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	4 cut(s)	24, 89, 168, 257
Sau3AI	GATC	3 cut(s)	18, 92, 316
Sau96I	GGNCC	1 cut(s)	375
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	5 cut(s)	116, 138, 155, 279, 384
Sfr274I	CTCGAG	1 cut(s)	137
Sfr303I	CCGCGG	1 cut(s)	27
SgrBI	CCGCGG	1 cut(s)	27
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	2 cut(s)	137, 335
SmoI	CTYRAG	2 cut(s)	137, 335
Sse9I	AATT	3 cut(s)	176, 320, 445
SsiI	CCGC	5 cut(s)	24, 26, 71, 88, 167
StyD4I	CCNGG	1 cut(s)	124
TaaI	ACNGT	4 cut(s)	11, 232, 283, 356
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	1 cut(s)	138
TasI	AATT	3 cut(s)	176, 320, 445
TauI	GCSGC	3 cut(s)	26, 91, 170
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TseFI	GTSAC	3 cut(s)	232, 277, 350
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	3 cut(s)	232, 277, 350
TspDTI	ATGAA	1 cut(s)	277
XhoI	CTCGAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.