Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Forward (+)

8222965 .. 8223759

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006536

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAAAATGAGGCGGTAGCAGCTGAGACTGCAGTGCCTAAGGTGGCAGTGGTGGTCTGCCTGCCGAGGGGGAAAACAGTTCTGTTGGGACGACGTCGCTCCTCGCTTGGCAACTCAACCTTTTCTTTCCTGGAGGTCACCTCGAGTGAGAGCTTTGAGGAGTGTGCGACCAGAGAAGTGAAGGAAGAGACTGACGAGCCCAAACCATTGCAGTACGTTGCAATTTTCATGCGAGCAGTGCTGGCCTATCCTGATCAAGTTCCTCAGAATGTTGAGCCAGAAATGTGTGATGGATGGGATTGGTACGACTGGAAGAGCCTCCCAAAACCACTCTTTTGGCCTTTGGAGAAAGTGGTGCAAGGTGGGTTCAATCCGTTCCCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

129

Amino Acids

14.47

Weight (kDa)

4.7

Isoelectric Point (pI)

54.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	14 - 114	2.3e-08	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	97
AciI	CCGC	1 cut(s)	14
AcyI	GRCGYC	1 cut(s)	94
AfaI	GTAC	2 cut(s)	215, 305
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	2 cut(s)	23, 153
AluI	AGCT	2 cut(s)	23, 153
Alw26I	GTCTC	2 cut(s)	20, 182
Ama87I	CYCGRG	1 cut(s)	142
AoxI	GGCC	2 cut(s)	243, 338
ApeKI	GCWGC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	130
AvaI	CYCGRG	1 cut(s)	142
AxyI	CCTNAGG	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	2 cut(s)	284, 288
BciT130I	CCWGG	1 cut(s)	131
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	2 cut(s)	20, 182
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	131
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpmI	CTGGAG	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	314
Bse21I	CCTNAGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	299
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	15, 278
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	2 cut(s)	91, 173
BseXI	GCAGC	1 cut(s)	32
BshFI	GGCC	2 cut(s)	245, 340
BsiHKCI	CYCGRG	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	2 cut(s)	20, 182
BsmFI	GGGAC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	245, 340
BsoBI	CYCGRG	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	245, 340
BspCNI	CTCAG	2 cut(s)	16, 277
BspMAI	CTGCAG	1 cut(s)	34
BspQI	GCTCTTC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	253
BssNI	GRCGYC	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	2 cut(s)	180, 308
BstACI	GRCGYC	1 cut(s)	94
BstC8I	GCNNGC	3 cut(s)	62, 234, 243
BstDEI	CTNAG	3 cut(s)	24, 39, 264
BstEII	GGTNACC	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	299
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	2 cut(s)	20, 182
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 29, 238, 242
BstNI	CCWGG	1 cut(s)	131
BstPI	GGTNACC	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	32
BstXI	CCANNNNNNTGG	1 cut(s)	336
Bsu36I	CCTNAGG	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	245, 340
BtsCI	GGATG	1 cut(s)	299
BtsI	GCAGTG	3 cut(s)	39, 54, 243
BtsIMutI	CAGTG	3 cut(s)	39, 54, 243
Cac8I	GCNNGC	3 cut(s)	62, 234, 243
Csp6I	GTAC	2 cut(s)	214, 304
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	7 cut(s)	23, 153, 199, 245, 277, 318, 340
CviKI_1	RGCY	7 cut(s)	23, 153, 199, 245, 277, 318, 340
CviQI	GTAC	2 cut(s)	214, 304
DdeI	CTNAG	3 cut(s)	24, 39, 264
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	180, 308
EarI	CTCTTC	2 cut(s)	180, 308
Eco24I	GRGCYC	1 cut(s)	201
Eco81I	CCTNAGG	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	142
Eco91I	GGTNACC	1 cut(s)	136
EcoO65I	GGTNACC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	201
FaeI	CATG	1 cut(s)	232
FaiI	YATR	1 cut(s)	230
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	1 cut(s)	228
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	306
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	245, 340
Hin1I	GRCGYC	1 cut(s)	94
Hin1II	CATG	1 cut(s)	232
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	267
Hpy188III	TCNNGA	1 cut(s)	251
Hpy99I	CGWCG	2 cut(s)	96, 99
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	2 cut(s)	94, 216
HpyCH4V	TGCA	4 cut(s)	32, 211, 221, 358
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 29, 238, 242
HpyF3I	CTNAG	3 cut(s)	24, 39, 264
HpySE526I	ACGT	2 cut(s)	94, 216
Hsp92I	GRCGYC	1 cut(s)	94
Hsp92II	CATG	1 cut(s)	232
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	253
LguI	GCTCTTC	1 cut(s)	308
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	8 cut(s)	74, 116, 143, 184, 227, 264, 291, 295
Lsp1109I	GCAGC	1 cut(s)	32
MaeII	ACGT	2 cut(s)	94, 216
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	2 cut(s)	197, 325
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	2 cut(s)	222, 382
MnlI	CCTC	8 cut(s)	4, 60, 112, 127, 151, 151, 273, 329
MseI	TTAA	1 cut(s)	385
MspA1I	CMGCKG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	20, 29, 238, 242
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	1 cut(s)	232
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	136
PaeR7I	CTCGAG	1 cut(s)	142
PciSI	GCTCTTC	1 cut(s)	308
PflFI	GACNNNGTC	1 cut(s)	93
PfoI	TCCNGGA	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	129
PspEI	GGTNACC	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	129
PspXI	VCTCGAGB	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	34
PsyI	GACNNNGTC	1 cut(s)	93
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	2 cut(s)	215, 305
RsaNI	GTAC	2 cut(s)	214, 304
SapI	GCTCTTC	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	385
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	9 cut(s)	25, 45, 97, 122, 138, 143, 155, 219, 364
SfcI	CTRYAG	1 cut(s)	30
Sfr274I	CTCGAG	1 cut(s)	142
SlaI	CTCGAG	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	2 cut(s)	222, 382
SsiI	CCGC	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	2 cut(s)	97, 219
TaqI	TCGA	1 cut(s)	143
TasI	AATT	2 cut(s)	222, 382
Tru1I	TTAA	1 cut(s)	385
Tru9I	TTAA	1 cut(s)	385
TscAI	CASTG	3 cut(s)	39, 54, 243
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	217
TspGWI	ACGGA	1 cut(s)	363
TspRI	CASTG	3 cut(s)	39, 54, 243
Tth111I	GACNNNGTC	1 cut(s)	93
XhoI	CTCGAG	1 cut(s)	142
ZraI	GACGTC	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.