Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Forward (+)

47285868 .. 47287658

Gene Structure 1791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0370600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGAAAGTTGACCAGCTTGCAGCATCTTCATGCTAAGGGTATTCGGCTGAAGTTGCCCAAATCAATTGCAAGGTTGAAAAGTCTACGGACGCTAGATCTGTGGGTTGTAATTAAAGGTGAAGGTGAAGAAGGATTGAGGTTAAGTGATTTGAGAGACATGGACGAGCTTCAGGGGACGCTTAGGATCGGATGGGTGGGCAAATTGAAAGATAGTGCTGCGAGTGATGCGGAGAAAGCCAAATTGGTGAACAAGAAACACCTTCTTCATTTGAGACTAGCGTTCTACAAGGGGGAGAGGGACCAGAGTACCATCGAGGAAGCAGTATTGAATGCCTTACAGCCAAATTCAAATCTTGAATCCTTAGAGATTGAAGGTTACGGTGGCAGCAACCTGTACCCCAATTGGACCTCCTCTTTAATTAACTTGAAAAGCCTGGCCTTCTCTTGGTGCTTTGTTTGTAACTATGTGCCTCTTTCGGTTTTGGGCTACTTGGGGTCCCTTGAGACACTCAGATTTACATTCATGTATGGAGTGAAAAAGGTTGGATTTGAGTACTCACTTGATCATCAAGTTATATTGTTCCCCAATCTGAAACAACTCGAGTTCTATGATTTGCCGAGGTGGGAAGAATGGGATCATGATGAGAATGATGCTACTTCATCGTCACCAACTTGTTTCATGCCACGCCTTTCTACTTTATCCATCGAGTACTGCCATAAGTTGCAGGTGAGGTGGCTGCCCAGAAACCGGCAACCCCGACCTCGATCGCTGCTCAGAAGAGGTCTGGAACGCCTCCGGCCTCCCTCCGGCCAGCCCCGCGCCGCCGTCGCCGCCTGGAACCACCTGCTACGTCGAGCGAAAGTGAAAGTGCGGACGTCTGCCTGTGATCGGGCCTGGAGTGGTCTGAGTAGTTGCTATGTGCTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

310

Amino Acids

35.5

Weight (kDa)

9.44

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	2 - 237	9.1e-14	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	48 - 174	2.8e-27	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	718, 855
AatII	GACGTC	1 cut(s)	881
Acc36I	ACCTGC	2 cut(s)	718, 855
AccI	GTMKAC	1 cut(s)	85
AccII	CGCG	1 cut(s)	822
AciI	CCGC	5 cut(s)	230, 820, 825, 834, 874
AclWI	GGATC	2 cut(s)	194, 645
AcoI	YGGCCR	1 cut(s)	811
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	2 cut(s)	71, 155
AcyI	GRCGYC	1 cut(s)	878
AfaI	GTAC	4 cut(s)	310, 398, 557, 713
AfiI	CCNNNNNNNGG	4 cut(s)	447, 750, 809, 891
AgsI	TTSAA	8 cut(s)	79, 208, 331, 351, 359, 374, 430, 929
AjnI	CCWGG	3 cut(s)	435, 836, 896
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	2 cut(s)	18, 169
AluI	AGCT	2 cut(s)	18, 169
Alw26I	GTCTC	3 cut(s)	150, 268, 500
AlwI	GGATC	2 cut(s)	194, 645
Ama87I	CYCGRG	1 cut(s)	602
AoxI	GGCC	4 cut(s)	438, 800, 811, 894
ApeKI	GCWGC	5 cut(s)	22, 218, 387, 739, 772
ApoI	RAATTY	1 cut(s)	346
AspLEI	GCGC	1 cut(s)	824
AspS9I	GGNCC	4 cut(s)	301, 408, 498, 894
AsuHPI	GGTGA	5 cut(s)	131, 137, 259, 660, 742
AvaI	CYCGRG	1 cut(s)	602
AvaII	GGWCC	3 cut(s)	301, 408, 498
BaeI	ACNNNNGTAYC	2 cut(s)	292, 325
BbvI	GCAGC	5 cut(s)	34, 205, 399, 726, 759
BccI	CCATC	3 cut(s)	186, 320, 713
BceAI	ACGGC	1 cut(s)	812
BciT130I	CCWGG	3 cut(s)	437, 838, 898
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	3 cut(s)	150, 268, 500
BfaI	CTAG	2 cut(s)	95, 278
BfuAI	ACCTGC	2 cut(s)	718, 855
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	7 cut(s)	23, 219, 388, 740, 773, 825, 834
BlsI	GCNGC	7 cut(s)	24, 220, 389, 741, 774, 826, 835
BmcAI	AGTACT	2 cut(s)	557, 713
Bme1390I	CCNGG	3 cut(s)	437, 838, 898
Bme18I	GGWCC	3 cut(s)	301, 408, 498
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	4 cut(s)	301, 408, 498, 894
BmiI	GGNNCC	4 cut(s)	302, 499, 500, 842
BmrFI	CCNGG	3 cut(s)	437, 838, 898
BmsI	GCATC	3 cut(s)	34, 217, 643
BpmI	CTGGAG	1 cut(s)	919
Bpu10I	CCTNAGC	2 cut(s)	36, 182
BpuEI	CTTGAG	1 cut(s)	524
BsaHI	GRCGYC	1 cut(s)	878
BsaJI	CCNNGG	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	4 cut(s)	447, 750, 809, 891
Bse118I	RCCGGY	1 cut(s)	750
BseBI	CCWGG	3 cut(s)	437, 838, 898
BseDI	CCNNGG	1 cut(s)	620
BseGI	GGATG	1 cut(s)	197
BseLI	CCNNNNNNNGG	4 cut(s)	447, 750, 809, 891
BseMII	CTCAG	3 cut(s)	526, 790, 899
BseRI	GAGGAG	1 cut(s)	403
BseXI	GCAGC	5 cut(s)	34, 205, 399, 726, 759
Bsh1236I	CGCG	1 cut(s)	822
Bsh1285I	CGRYCG	1 cut(s)	770
BshFI	GGCC	4 cut(s)	440, 802, 813, 896
BsiEI	CGRYCG	1 cut(s)	770
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	3 cut(s)	751, 799, 810
BslFI	GGGAC	3 cut(s)	190, 314, 484
BslI	CCNNNNNNNGG	4 cut(s)	447, 750, 809, 891
BsmAI	GTCTC	3 cut(s)	150, 268, 500
BsmFI	GGGAC	3 cut(s)	190, 314, 484
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	4 cut(s)	440, 802, 813, 896
BsoBI	CYCGRG	1 cut(s)	602
Bsp143I	GATC	6 cut(s)	97, 186, 565, 637, 767, 889
BspACI	CCGC	5 cut(s)	230, 820, 825, 834, 874
BspANI	GGCC	4 cut(s)	440, 802, 813, 896
BspCNI	CTCAG	3 cut(s)	525, 789, 900
BspFNI	CGCG	1 cut(s)	822
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	4 cut(s)	302, 499, 500, 842
BspMI	ACCTGC	2 cut(s)	718, 855
BspPI	GGATC	2 cut(s)	194, 645
BsrFI	RCCGGY	1 cut(s)	750
BssAI	RCCGGY	1 cut(s)	750
BssECI	CCNNGG	1 cut(s)	620
BssMI	GATC	6 cut(s)	97, 186, 565, 637, 767, 889
BssNI	GRCGYC	1 cut(s)	878
Bst2UI	CCWGG	3 cut(s)	437, 838, 898
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	1 cut(s)	775
BstACI	GRCGYC	1 cut(s)	878
BstC8I	GCNNGC	2 cut(s)	20, 815
BstDEI	CTNAG	6 cut(s)	36, 182, 364, 512, 776, 908
BstF5I	GGATG	1 cut(s)	197
BstFNI	CGCG	1 cut(s)	822
BstHHI	GCGC	1 cut(s)	824
BstKTI	GATC	6 cut(s)	100, 189, 568, 640, 770, 892
BstMAI	GTCTC	3 cut(s)	150, 268, 500
BstMBI	GATC	6 cut(s)	97, 186, 565, 637, 767, 889
BstMCI	CGRYCG	1 cut(s)	770
BstMWI	GCNNNNNNNGC	6 cut(s)	55, 227, 236, 819, 830, 833
BstNI	CCWGG	3 cut(s)	437, 838, 898
BstSCI	CCNGG	3 cut(s)	435, 836, 896
BstUI	CGCG	1 cut(s)	822
BstV1I	GCAGC	5 cut(s)	34, 205, 399, 726, 759
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	4 cut(s)	440, 802, 813, 896
BtsCI	GGATG	1 cut(s)	197
BveI	ACCTGC	2 cut(s)	718, 855
Cac8I	GCNNGC	2 cut(s)	20, 815
CciI	TCATGA	1 cut(s)	640
CfoI	GCGC	1 cut(s)	824
Cfr10I	RCCGGY	1 cut(s)	750
Cfr13I	GGNCC	4 cut(s)	301, 408, 498, 894
CseI	GACGC	2 cut(s)	100, 187
Csp6I	GTAC	4 cut(s)	309, 397, 556, 712
CviAII	CATG	5 cut(s)	32, 160, 526, 641, 682
CviQI	GTAC	4 cut(s)	309, 397, 556, 712
DdeI	CTNAG	6 cut(s)	36, 182, 364, 512, 776, 908
DpnI	GATC	6 cut(s)	99, 188, 567, 639, 769, 891
DpnII	GATC	6 cut(s)	97, 186, 565, 637, 767, 889
EaeI	YGGCCR	1 cut(s)	811
Eam1104I	CTCTTC	1 cut(s)	775
EarI	CTCTTC	1 cut(s)	775
Eco47I	GGWCC	3 cut(s)	301, 408, 498
Eco57I	CTGAAG	2 cut(s)	71, 155
Eco88I	CYCGRG	1 cut(s)	602
EcoO109I	RGGNCCY	1 cut(s)	498
EcoRII	CCWGG	3 cut(s)	435, 836, 896
FaeI	CATG	5 cut(s)	35, 163, 529, 644, 685
FaqI	GGGAC	3 cut(s)	190, 314, 484
FatI	CATG	5 cut(s)	31, 159, 525, 640, 681
FauI	CCCGC	1 cut(s)	827
FbaI	TGATCA	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	85
Fnu4HI	GCNGC	7 cut(s)	23, 219, 388, 740, 773, 825, 834
FokI	GGATG	1 cut(s)	204
Fsp4HI	GCNGC	7 cut(s)	23, 219, 388, 740, 773, 825, 834
FspBI	CTAG	2 cut(s)	95, 278
GlaI	GCGC	1 cut(s)	823
GluI	GCNGC	7 cut(s)	23, 219, 388, 740, 773, 825, 834
GsuI	CTGGAG	1 cut(s)	919
HaeIII	GGCC	4 cut(s)	440, 802, 813, 896
HapII	CCGG	3 cut(s)	751, 799, 810
HgaI	GACGC	2 cut(s)	100, 187
HhaI	GCGC	1 cut(s)	824
Hin1I	GRCGYC	1 cut(s)	878
Hin1II	CATG	5 cut(s)	35, 163, 529, 644, 685
Hin6I	GCGC	1 cut(s)	822
HinP1I	GCGC	1 cut(s)	822
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	359
HpaII	CCGG	3 cut(s)	751, 799, 810
HphI	GGTGA	5 cut(s)	131, 137, 259, 660, 742
Hpy166II	GTNNAC	3 cut(s)	12, 86, 250
Hpy188I	TCNGA	5 cut(s)	191, 515, 594, 779, 909
Hpy188III	TCNNGA	3 cut(s)	356, 641, 788
Hpy8I	GTNNAC	3 cut(s)	12, 86, 250
Hpy99I	CGWCG	2 cut(s)	833, 858
HpyAV	CCTTC	5 cut(s)	116, 125, 272, 368, 451
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	2 cut(s)	853, 878
HpyCH4V	TGCA	3 cut(s)	22, 71, 727
HpyF10VI	GCNNNNNNNGC	6 cut(s)	55, 227, 236, 819, 830, 833
HpyF3I	CTNAG	6 cut(s)	36, 182, 364, 512, 776, 908
HpySE526I	ACGT	2 cut(s)	853, 878
Hsp92I	GRCGYC	1 cut(s)	878
Hsp92II	CATG	5 cut(s)	35, 163, 529, 644, 685
HspAI	GCGC	1 cut(s)	822
KflI	GGGWCCC	1 cut(s)	498
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	6 cut(s)	97, 186, 565, 637, 767, 889
Lsp1109I	GCAGC	5 cut(s)	34, 205, 399, 726, 759
LweI	GCATC	3 cut(s)	34, 217, 643
MaeI	CTAG	2 cut(s)	95, 278
MaeII	ACGT	2 cut(s)	853, 878
MaeIII	GTNAC	3 cut(s)	377, 461, 666
MalI	GATC	6 cut(s)	99, 188, 567, 639, 769, 891
MboI	GATC	6 cut(s)	97, 186, 565, 637, 767, 889
MboII	GAAGA	5 cut(s)	20, 140, 257, 641, 792
MfeI	CAATTG	2 cut(s)	66, 403
MflI	RGATCY	1 cut(s)	97
MluCI	AATT	7 cut(s)	66, 111, 203, 242, 346, 403, 420
MmeI	TCCRAC	1 cut(s)	526
MseI	TTAA	4 cut(s)	114, 143, 419, 423
MslI	CAYNNNNRTG	1 cut(s)	30
MspI	CCGG	3 cut(s)	751, 799, 810
MspR9I	CCNGG	3 cut(s)	437, 838, 898
MunI	CAATTG	2 cut(s)	66, 403
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	3 cut(s)	437, 838, 898
MvnI	CGCG	1 cut(s)	822
MwoI	GCNNNNNNNGC	6 cut(s)	55, 227, 236, 819, 830, 833
NdeII	GATC	6 cut(s)	97, 186, 565, 637, 767, 889
NlaIII	CATG	5 cut(s)	35, 163, 529, 644, 685
NlaIV	GGNNCC	4 cut(s)	302, 499, 500, 842
NmeAIII	GCCGAG	1 cut(s)	645
NmuCI	GTSAC	1 cut(s)	666
PacI	TTAATTAA	1 cut(s)	423
PaeR7I	CTCGAG	1 cut(s)	602
PagI	TCATGA	1 cut(s)	640
PaqCI	CACCTGC	2 cut(s)	718, 855
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	7 cut(s)	24, 220, 389, 741, 774, 826, 835
Ple19I	CGATCG	1 cut(s)	770
PpuMI	RGGWCCY	1 cut(s)	498
Psp5II	RGGWCCY	1 cut(s)	498
Psp6I	CCWGG	3 cut(s)	435, 836, 896
PspGI	CCWGG	3 cut(s)	435, 836, 896
PspN4I	GGNNCC	4 cut(s)	302, 499, 500, 842
PspPI	GGNCC	4 cut(s)	301, 408, 498, 894
PspPPI	RGGWCCY	1 cut(s)	498
PspXI	VCTCGAGB	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	97
PvuI	CGATCG	1 cut(s)	770
RsaI	GTAC	4 cut(s)	310, 398, 557, 713
RsaNI	GTAC	4 cut(s)	309, 397, 556, 712
RseI	CAYNNNNRTG	1 cut(s)	30
SaqAI	TTAA	4 cut(s)	114, 143, 419, 423
SatI	GCNGC	7 cut(s)	23, 219, 388, 740, 773, 825, 834
Sau3AI	GATC	6 cut(s)	97, 186, 565, 637, 767, 889
Sau96I	GGNCC	4 cut(s)	301, 408, 498, 894
ScaI	AGTACT	2 cut(s)	557, 713
ScrFI	CCNGG	3 cut(s)	437, 838, 898
SfaNI	GCATC	3 cut(s)	34, 217, 643
Sfr274I	CTCGAG	1 cut(s)	602
SinI	GGWCC	3 cut(s)	301, 408, 498
SlaI	CTCGAG	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	30
SmlI	CTYRAG	2 cut(s)	503, 602
SmoI	CTYRAG	2 cut(s)	503, 602
Sse9I	AATT	7 cut(s)	66, 111, 203, 242, 346, 403, 420
SsiI	CCGC	5 cut(s)	230, 820, 825, 834, 874
SspMI	CTAG	2 cut(s)	95, 278
StyD4I	CCNGG	3 cut(s)	435, 836, 896
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	2 cut(s)	856, 881
TaqI	TCGA	5 cut(s)	315, 603, 708, 766, 856
TasI	AATT	7 cut(s)	66, 111, 203, 242, 346, 403, 420
TatI	WGTACW	2 cut(s)	555, 711
TauI	GCSGC	2 cut(s)	827, 836
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	4 cut(s)	114, 143, 419, 423
Tru9I	TTAA	4 cut(s)	114, 143, 419, 423
TseFI	GTSAC	1 cut(s)	666
TseI	GCWGC	5 cut(s)	22, 218, 387, 739, 772
Tsp45I	GTSAC	1 cut(s)	666
TspDTI	ATGAA	5 cut(s)	20, 257, 514, 651, 670
TspGWI	ACGGA	1 cut(s)	103
VpaK11BI	GGWCC	3 cut(s)	301, 408, 498
XapI	RAATTY	1 cut(s)	346
XhoI	CTCGAG	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	85
XspI	CTAG	2 cut(s)	95, 278
ZraI	GACGTC	1 cut(s)	879
ZrmI	AGTACT	2 cut(s)	557, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.