Rorug07G0216500

Nudix hydrolase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
19254846 .. 19256769
1924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0216500.1

Sequence Viewer

Length: 1068 bp
ATGGCTGCAGTTGCTCAAGCCTTGGAGACCTCAAACGTCACCAGCATCAAATCACTAGCTGAGTCACCAGCTCTCAGCTCTGTCCCTTCCGCTTACGCCTTCAACATAAACCCCAATGATGAAGCTGATCCAAATGACCCTGAGTTTGCTATTCCCATTGTTGATATGTCACTTCTCACCTCTGGTTCTCCTGATCAGCGCGCCCAAATCGTCCGCGATCTTGTCAAAATTTGTGAAGAATGGGGCTTCTTTATCGCAATTAACCACGGAGTACCAGAGAGCCTAATGAAGGGGATGATCGACGCATGCCATGGATTTTTCAGTCTTCCAGATGAGGAGAAGAAGGAGTTTAAATCAGGAAATGATGTTCTTGAGATGTTCAAGTATGGTACAAGTTATAATCTTGCATTGGATAAAGTTCTTCTATGGAGGGACTTCTTTAAGGTCAGAACACATCCAGAGTTCTACTCCCTCTACAAACCAGCTGGCTTCAGTGATGTTTCACTGGAGTTCGGCAAAAGAACAAGAGAAGTGGCACTAGAAATCACAAAAGCAATATCAGAAAGCCTGGGATTGGAGCCGAATTACATATACGAGACAATGAACATGGATCGTGGCTTACAATTGCTAGCCGGCAATTACTACCCACCTTGCCCTCAGCCAGAACATGCAATCGGTATACCACATCATACCGATCACGGTCTAGTCACACTCCTCATCCAGAATGAGATGAATGGCCTCCAAGTCGAACACAACGGAAAATGGCTCACTGTTAATGGCCCTTCCAATGGCTTCTTTGTGAACCTTGCTGATCAAATGCAGATTCTAACCAACGGTAAATACAAGAGTGTGATGCATAGGGCGACTGTGAATAACACAGCGACAAGGATATCCATAGCCATACCACATGGACCTTCTATAGATACAATCATCGCACCAGCACCAGAGTTGTGTGAAAGAGAAGGCCAAGCTCCAAAGTACCTTGCAATGAACTATAAAGAGTACATACAACTTCAACAAAGTGGCAAGAACTACATGAAGTCCACCTTCGATCACATCCGAGCCTAG

Protein Analysis

355

Amino Acids

39.61

Weight (kDa)

5.4

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 51 - 154 1.9e-25 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 208 - 302 8.4e-29 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000600)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68760
fragaria_vesca FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 399
AccI GTMKAC 1 cut(s) 679
AccII CGCG 2 cut(s) 201, 216
AciI CCGC 2 cut(s) 90, 214
AclWI GGATC 2 cut(s) 122, 618
AcsI RAATTY 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 475
AfaI GTAC 4 cut(s) 273, 391, 980, 1004
AfiI CCNNNNNNNGG 3 cut(s) 289, 574, 788
AgsI TTSAA 3 cut(s) 103, 382, 1016
AjnI CCWGG 1 cut(s) 567
AloI GAACNNNNNNTCC 2 cut(s) 351, 383
AluBI AGCT 6 cut(s) 59, 71, 78, 125, 485, 971
AluI AGCT 6 cut(s) 59, 71, 78, 125, 485, 971
Alw26I GTCTC 2 cut(s) 20, 590
AlwI GGATC 2 cut(s) 122, 618
AoxI GGCC 3 cut(s) 736, 778, 964
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 228
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AspLEI GCGC 2 cut(s) 201, 203
AspS9I GGNCC 2 cut(s) 779, 911
AsuHPI GGTGA 3 cut(s) 31, 57, 169
AsuNHI GCTAGC 1 cut(s) 628
AvaII GGWCC 1 cut(s) 911
BbsI GAAGAC 1 cut(s) 317
BbvCI CCTCAGC 1 cut(s) 657
BciT130I CCWGG 1 cut(s) 569
BclI TGATCA 2 cut(s) 193, 811
BcoDI GTCTC 2 cut(s) 20, 590
BfaI CTAG 5 cut(s) 56, 539, 629, 704, 1066
BfmI CTRYAG 2 cut(s) 6, 918
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 569
Bme18I GGWCC 1 cut(s) 911
BmgT120I GGNCC 2 cut(s) 779, 911
BmiI GGNNCC 1 cut(s) 579
BmrFI CCNGG 1 cut(s) 569
BmsI GCATC 2 cut(s) 54, 843
BmtI GCTAGC 1 cut(s) 632
BpiI GAAGAC 1 cut(s) 317
BplI GAGNNNNNCTC 2 cut(s) 452, 484
BpmI CTGGAG 1 cut(s) 527
Bpu10I CCTNAGC 1 cut(s) 657
BpuEI CTTGAG 1 cut(s) 392
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 4 cut(s) 21, 265, 310, 568
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 574, 788
Bse118I RCCGGY 1 cut(s) 632
Bse1I ACTGG 1 cut(s) 510
Bse3DI GCAATG 1 cut(s) 993
BseBI CCWGG 1 cut(s) 569
BseDI CCNNGG 4 cut(s) 21, 265, 310, 568
BseGI GGATG 4 cut(s) 300, 454, 717, 1056
BseLI CCNNNNNNNGG 3 cut(s) 289, 574, 788
BseMI GCAATG 1 cut(s) 993
BseMII CTCAG 4 cut(s) 51, 88, 132, 671
BseNI ACTGG 1 cut(s) 510
BsePI GCGCGC 1 cut(s) 199
BseRI GAGGAG 2 cut(s) 350, 704
Bsh1236I CGCG 2 cut(s) 201, 216
BshFI GGCC 3 cut(s) 738, 780, 966
BsiSI CCGG 1 cut(s) 633
BslFI GGGAC 2 cut(s) 68, 446
BslI CCNNNNNNNGG 3 cut(s) 289, 574, 788
BsmAI GTCTC 2 cut(s) 20, 590
BsmFI GGGAC 2 cut(s) 68, 446
BsnI GGCC 3 cut(s) 738, 780, 966
Bso31I GGTCTC 1 cut(s) 20
Bsp143I GATC 8 cut(s) 127, 193, 217, 297, 610, 694, 811, 1051
Bsp19I CCATGG 1 cut(s) 310
BspACI CCGC 2 cut(s) 90, 214
BspANI GGCC 3 cut(s) 738, 780, 966
BspCNI CTCAG 4 cut(s) 52, 87, 133, 670
BspFNI CGCG 2 cut(s) 201, 216
BspLI GGNNCC 1 cut(s) 579
BspMAI CTGCAG 1 cut(s) 10
BspOI GCTAGC 1 cut(s) 632
BspPI GGATC 2 cut(s) 122, 618
BspTNI GGTCTC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 993
BsrFI RCCGGY 1 cut(s) 632
BsrI ACTGG 1 cut(s) 510
BssAI RCCGGY 1 cut(s) 632
BssECI CCNNGG 4 cut(s) 21, 265, 310, 568
BssHII GCGCGC 1 cut(s) 199
BssMI GATC 8 cut(s) 127, 193, 217, 297, 610, 694, 811, 1051
BssNAI GTATAC 1 cut(s) 680
BssT1I CCWWGG 2 cut(s) 21, 310
Bst1107I GTATAC 1 cut(s) 680
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 4 cut(s) 701, 772, 836, 868
BstC8I GCNNGC 5 cut(s) 201, 307, 487, 630, 634
BstDEI CTNAG 4 cut(s) 60, 74, 141, 657
BstDSI CCRYGG 2 cut(s) 265, 310
BstENI CCTNNNNNAGG 1 cut(s) 287
BstF5I GGATG 4 cut(s) 300, 454, 717, 1056
BstFNI CGCG 2 cut(s) 201, 216
BstHHI GCGC 2 cut(s) 201, 203
BstKTI GATC 8 cut(s) 130, 196, 220, 300, 613, 697, 814, 1054
BstMAI GTCTC 2 cut(s) 20, 590
BstMBI GATC 8 cut(s) 127, 193, 217, 297, 610, 694, 811, 1051
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 569
BstNSI RCATGY 2 cut(s) 309, 671
BstSCI CCNGG 1 cut(s) 567
BstSFI CTRYAG 2 cut(s) 6, 918
BstUI CGCG 2 cut(s) 201, 216
BstV2I GAAGAC 1 cut(s) 317
BstZ17I GTATAC 1 cut(s) 680
BsuRI GGCC 3 cut(s) 738, 780, 966
BtgI CCRYGG 2 cut(s) 265, 310
BtgZI GCGATG 1 cut(s) 916
BtsCI GGATG 4 cut(s) 300, 454, 717, 1056
BtsIMutI CAGTG 3 cut(s) 499, 503, 768
Cac8I GCNNGC 5 cut(s) 201, 307, 487, 630, 634
CfoI GCGC 2 cut(s) 201, 203
Cfr10I RCCGGY 1 cut(s) 632
Cfr13I GGNCC 2 cut(s) 779, 911
CseI GACGC 1 cut(s) 311
Csp6I GTAC 4 cut(s) 272, 390, 979, 1003
CspCI CAANNNNNGTGG 2 cut(s) 513, 548
CviAII CATG 6 cut(s) 306, 311, 607, 668, 908, 1036
CviQI GTAC 4 cut(s) 272, 390, 979, 1003
DdeI CTNAG 4 cut(s) 60, 74, 141, 657
DpnI GATC 8 cut(s) 129, 195, 219, 299, 612, 696, 813, 1053
DpnII GATC 8 cut(s) 127, 193, 217, 297, 610, 694, 811, 1051
DraI TTTAAA 1 cut(s) 352
Eco130I CCWWGG 2 cut(s) 21, 310
Eco31I GGTCTC 1 cut(s) 20
Eco32I GATATC 1 cut(s) 891
Eco47I GGWCC 1 cut(s) 911
Eco57I CTGAAG 1 cut(s) 475
EcoNI CCTNNNNNAGG 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 567
EcoRV GATATC 1 cut(s) 891
EcoT14I CCWWGG 2 cut(s) 21, 310
EcoT22I ATGCAT 1 cut(s) 858
ErhI CCWWGG 2 cut(s) 21, 310
FaeI CATG 6 cut(s) 309, 314, 610, 671, 911, 1039
FalI AAGNNNNNCTT 2 cut(s) 1031, 1063
FaqI GGGAC 2 cut(s) 68, 446
FatI CATG 6 cut(s) 305, 310, 606, 667, 907, 1035
FbaI TGATCA 2 cut(s) 193, 811
FblI GTMKAC 1 cut(s) 679
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 4 cut(s) 307, 441, 704, 1043
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 5 cut(s) 56, 539, 629, 704, 1066
GlaI GCGC 2 cut(s) 200, 202
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 527
HaeIII GGCC 3 cut(s) 738, 780, 966
HapII CCGG 1 cut(s) 633
HgaI GACGC 1 cut(s) 311
HhaI GCGC 2 cut(s) 201, 203
Hin1II CATG 6 cut(s) 309, 314, 610, 671, 911, 1039
Hin6I GCGC 2 cut(s) 199, 201
HinP1I GCGC 2 cut(s) 199, 201
HinfI GANTC 2 cut(s) 62, 823
HpaII CCGG 1 cut(s) 633
HphI GGTGA 3 cut(s) 31, 57, 169
Hpy166II GTNNAC 3 cut(s) 680, 802, 1044
Hpy188I TCNGA 3 cut(s) 449, 562, 1061
Hpy188III TCNNGA 6 cut(s) 191, 329, 357, 371, 458, 721
Hpy8I GTNNAC 3 cut(s) 680, 802, 1044
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 8 cut(s) 96, 109, 283, 337, 792, 924, 956, 1057
HpyCH4III ACNGT 4 cut(s) 701, 772, 836, 868
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 6 cut(s) 8, 407, 671, 820, 856, 986
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 4 cut(s) 60, 74, 141, 657
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 6 cut(s) 309, 314, 610, 671, 911, 1039
HspAI GCGC 2 cut(s) 199, 201
KroI GCCGGC 1 cut(s) 632
KroNI GCCGGC 1 cut(s) 634
Ksp22I TGATCA 2 cut(s) 193, 811
Kzo9I GATC 8 cut(s) 127, 193, 217, 297, 610, 694, 811, 1051
LmnI GCTCC 2 cut(s) 577, 976
LweI GCATC 2 cut(s) 54, 843
MaeI CTAG 5 cut(s) 56, 539, 629, 704, 1066
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 4 cut(s) 37, 63, 168, 706
MalI GATC 8 cut(s) 129, 195, 219, 299, 612, 696, 813, 1053
MboI GATC 8 cut(s) 127, 193, 217, 297, 610, 694, 811, 1051
MboII GAAGA 4 cut(s) 248, 317, 352, 413
MfeI CAATTG 1 cut(s) 623
MluCI AATT 5 cut(s) 228, 258, 583, 623, 637
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 8 cut(s) 40, 190, 328, 423, 482, 666, 725, 749
Mph1103I ATGCAT 1 cut(s) 858
MroNI GCCGGC 1 cut(s) 632
MseI TTAA 4 cut(s) 261, 351, 441, 774
MspA1I CMGCKG 1 cut(s) 485
MspI CCGG 1 cut(s) 633
MspR9I CCNGG 1 cut(s) 569
MunI CAATTG 1 cut(s) 623
MvaI CCWGG 1 cut(s) 569
MvnI CGCG 2 cut(s) 201, 216
MwoI GCNNNNNNNGC 1 cut(s) 11
NaeI GCCGGC 1 cut(s) 634
NcoI CCATGG 1 cut(s) 310
NdeII GATC 8 cut(s) 127, 193, 217, 297, 610, 694, 811, 1051
NgoMIV GCCGGC 1 cut(s) 632
NheI GCTAGC 1 cut(s) 628
NlaIII CATG 6 cut(s) 309, 314, 610, 671, 911, 1039
NlaIV GGNNCC 1 cut(s) 579
NmuCI GTSAC 4 cut(s) 37, 63, 168, 706
NsiI ATGCAT 1 cut(s) 858
NspI RCATGY 2 cut(s) 309, 671
PaeI GCATGC 1 cut(s) 309
PauI GCGCGC 1 cut(s) 199
PdiI GCCGGC 1 cut(s) 634
PfeI GAWTC 1 cut(s) 823
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PsiI TTATAA 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 567
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 1 cut(s) 579
PspPI GGNCC 2 cut(s) 779, 911
PstI CTGCAG 1 cut(s) 10
PteI GCGCGC 1 cut(s) 199
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 4 cut(s) 273, 391, 980, 1004
RsaNI GTAC 4 cut(s) 272, 390, 979, 1003
SaqAI TTAA 4 cut(s) 261, 351, 441, 774
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 8 cut(s) 127, 193, 217, 297, 610, 694, 811, 1051
Sau96I GGNCC 2 cut(s) 779, 911
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 569
SfaNI GCATC 2 cut(s) 54, 843
SfcI CTRYAG 2 cut(s) 6, 918
SinI GGWCC 1 cut(s) 911
SmlI CTYRAG 2 cut(s) 15, 371
SmoI CTYRAG 2 cut(s) 15, 371
SphI GCATGC 1 cut(s) 309
Sse9I AATT 5 cut(s) 228, 258, 583, 623, 637
SsiI CCGC 2 cut(s) 90, 214
SspMI CTAG 5 cut(s) 56, 539, 629, 704, 1066
StyD4I CCNGG 1 cut(s) 567
StyI CCWWGG 2 cut(s) 21, 310
TaaI ACNGT 4 cut(s) 701, 772, 836, 868
TaiI ACGT 1 cut(s) 39
TaqI TCGA 3 cut(s) 300, 747, 1050
TasI AATT 5 cut(s) 228, 258, 583, 623, 637
TatI WGTACW 1 cut(s) 1002
TfiI GAWTC 1 cut(s) 823
Tru1I TTAA 4 cut(s) 261, 351, 441, 774
Tru9I TTAA 4 cut(s) 261, 351, 441, 774
TscAI CASTG 3 cut(s) 499, 510, 775
TseFI GTSAC 4 cut(s) 37, 63, 168, 706
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 4 cut(s) 37, 63, 168, 706
TspDTI ATGAA 6 cut(s) 135, 302, 617, 746, 1004, 1052
TspGWI ACGGA 2 cut(s) 282, 771
TspRI CASTG 3 cut(s) 499, 510, 775
VpaK11BI GGWCC 1 cut(s) 911
XagI CCTNNNNNAGG 1 cut(s) 287
XapI RAATTY 1 cut(s) 228
XceI RCATGY 2 cut(s) 309, 671
XmiI GTMKAC 1 cut(s) 679
XspI CTAG 5 cut(s) 56, 539, 629, 704, 1066
Zsp2I ATGCAT 1 cut(s) 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.