Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

29028092 .. 29029296

Gene Structure 1205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCAGAGTCTTCTCCGGTCCCCAGAGTAGGTGTGGTGGTGTTTCTTCTCAAAGACAAAACCGTGCTCCTAGGACGACGTCGTTCCTCCATCGGCGCCTCCACTTTCGCTCTCCCCGGTGGCCATCTAGAGTTCGGCGAGAGCTTTGAGGAGTGTGCGGCGAGAGAACTGAAGGAAGAGACTGGTGTGGAAGTAGACAAGCTCGAGTTTGTGACGGTGACGAACAACTTGTTCTTGGACGAACCCAAACCGGCGCATTACGTGACCATCTTCATGCGCGCGGGTATGAAAGATCCCGATCAAGTTCCCCAGACTGTTGAGCCGGACAAGTGTGAGGGCTGGGGTTGGTACGAGTGGGACGACCTCCCCAAACCACTGTTTTGGCCTTTGGAGAAGATGGTGCAGAGTGGGTTTAGTCCTTTTCCTGATTCCAATTCAGGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

149

Amino Acids

16.59

Weight (kDa)

4.7

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	8 - 133	3.9e-23	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	82
AccB1I	GGYRCC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	2 cut(s)	279, 281
AciI	CCGC	2 cut(s)	158, 281
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	191
AcyI	GRCGYC	2 cut(s)	79, 96
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	2 cut(s)	29, 438
AluBI	AGCT	2 cut(s)	144, 202
AluI	AGCT	2 cut(s)	144, 202
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	2 cut(s)	121, 383
AspA2I	CCTAGG	1 cut(s)	70
AspLEI	GCGC	4 cut(s)	98, 256, 279, 281
AspS9I	GGNCC	1 cut(s)	19
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	229
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	19
AvrII	CCTAGG	1 cut(s)	70
BalI	TGGCCA	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	3
Bbv12I	GWGCWC	1 cut(s)	69
BccI	CCATC	4 cut(s)	98, 132, 275, 391
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	2 cut(s)	71, 128
BfoI	RGCGCY	1 cut(s)	99
BisI	GCNGC	1 cut(s)	159
BlnI	CCTAGG	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	160
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	2 cut(s)	21, 97
BmrFI	CCNGG	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	3
BpuMI	CCSGG	1 cut(s)	117
BsaAI	YACGTR	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	297
BsaHI	GRCGYC	2 cut(s)	79, 96
BsaJI	CCNNGG	2 cut(s)	70, 115
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 438
Bse118I	RCCGGY	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	187
Bse8I	GATNNNNATC	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	70, 115
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	2 cut(s)	29, 438
BseNI	ACTGG	1 cut(s)	187
BsePI	GCGCGC	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	164
BseYI	CCCAGC	1 cut(s)	339
BsgI	GTGCAG	1 cut(s)	422
Bsh1236I	CGCG	2 cut(s)	279, 281
BshFI	GGCC	2 cut(s)	123, 385
BshNI	GGYRCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	4 cut(s)	17, 117, 251, 323
BslFI	GGGAC	2 cut(s)	5, 371
BslI	CCNNNNNNNGG	2 cut(s)	29, 438
BsmAI	GTCTC	1 cut(s)	173
BsmFI	GGGAC	2 cut(s)	5, 371
BsnI	GGCC	2 cut(s)	123, 385
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	292, 298
BspACI	CCGC	2 cut(s)	158, 281
BspANI	GGCC	2 cut(s)	123, 385
BspFNI	CGCG	2 cut(s)	279, 281
BspLI	GGNNCC	2 cut(s)	21, 97
BspPI	GGATC	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	70, 115
BssHII	GCGCGC	1 cut(s)	277
BssMI	GATC	2 cut(s)	292, 298
BssNI	GRCGYC	2 cut(s)	79, 96
BssT1I	CCWWGG	1 cut(s)	70
Bst4CI	ACNGT	4 cut(s)	64, 217, 316, 378
Bst6I	CTCTTC	1 cut(s)	171
BstACI	GRCGYC	2 cut(s)	79, 96
BstBAI	YACGTR	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	279
BstFNI	CGCG	2 cut(s)	279, 281
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	4 cut(s)	98, 256, 279, 281
BstKTI	GATC	2 cut(s)	295, 301
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	2 cut(s)	292, 298
BstSCI	CCNGG	1 cut(s)	115
BstUI	CGCG	2 cut(s)	279, 281
BstV2I	GAAGAC	1 cut(s)	3
BstX2I	RGATCY	1 cut(s)	292
BstXI	CCANNNNNNTGG	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	123, 385
BtsIMutI	CAGTG	1 cut(s)	374
Cac8I	GCNNGC	1 cut(s)	279
CfoI	GCGC	4 cut(s)	98, 256, 279, 281
Cfr10I	RCCGGY	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	6 cut(s)	123, 144, 202, 322, 339, 385
CviKI_1	RGCY	6 cut(s)	123, 144, 202, 322, 339, 385
CviQI	GTAC	1 cut(s)	349
DinI	GGCGCC	1 cut(s)	97
DpnI	GATC	2 cut(s)	294, 300
DpnII	GATC	2 cut(s)	292, 298
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	191
Eco88I	CYCGRG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	70
EgeI	GGCGCC	1 cut(s)	97
EheI	GGCGCC	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	1 cut(s)	277
FaiI	YATR	2 cut(s)	275, 287
FaqI	GGGAC	2 cut(s)	5, 371
FatI	CATG	1 cut(s)	273
FauI	CCCGC	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	2 cut(s)	71, 128
GlaI	GCGC	4 cut(s)	97, 255, 278, 280
GluI	GCNGC	1 cut(s)	159
GsaI	CCCAGC	1 cut(s)	343
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	123, 385
HapII	CCGG	4 cut(s)	17, 117, 251, 323
HhaI	GCGC	4 cut(s)	98, 256, 279, 281
Hin1I	GRCGYC	2 cut(s)	79, 96
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	4 cut(s)	96, 254, 277, 279
HinP1I	GCGC	4 cut(s)	96, 254, 277, 279
HinfI	GANTC	2 cut(s)	8, 428
HpaII	CCGG	4 cut(s)	17, 117, 251, 323
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188III	TCNNGA	3 cut(s)	128, 296, 425
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	2 cut(s)	81, 84
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	4 cut(s)	64, 217, 316, 378
HpyCH4IV	ACGT	2 cut(s)	79, 261
HpyCH4V	TGCA	1 cut(s)	403
HpySE526I	ACGT	2 cut(s)	79, 261
Hsp92I	GRCGYC	2 cut(s)	79, 96
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	4 cut(s)	96, 254, 277, 279
KasI	GGCGCC	1 cut(s)	95
Kzo9I	GATC	2 cut(s)	292, 298
LmnI	GCTCC	1 cut(s)	72
MaeI	CTAG	2 cut(s)	71, 128
MaeII	ACGT	2 cut(s)	79, 261
MaeIII	GTNAC	3 cut(s)	211, 217, 262
MalI	GATC	2 cut(s)	294, 300
MboI	GATC	2 cut(s)	292, 298
MboII	GAAGA	5 cut(s)	3, 38, 188, 262, 406
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	69
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	1 cut(s)	433
MluNI	TGGCCA	1 cut(s)	123
Mly113I	GGCGCC	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	5 cut(s)	97, 109, 142, 328, 374
Mox20I	TGGCCA	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	272
Msp20I	TGGCCA	1 cut(s)	123
MspI	CCGG	4 cut(s)	17, 117, 251, 323
MspR9I	CCNGG	1 cut(s)	117
MvnI	CGCG	2 cut(s)	279, 281
NarI	GGCGCC	1 cut(s)	96
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	2 cut(s)	292, 298
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	2 cut(s)	21, 97
NmuCI	GTSAC	3 cut(s)	211, 217, 262
PaeR7I	CTCGAG	1 cut(s)	203
PauI	GCGCGC	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	428
PflFI	GACNNNGTC	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	160
PleI	GAGTC	1 cut(s)	16
PluTI	GGCGCC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	16
Ppu21I	YACGTR	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	21, 97
PspPI	GGNCC	1 cut(s)	19
PspXI	VCTCGAGB	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	292
PsyI	GACNNNGTC	1 cut(s)	78
PteI	GCGCGC	1 cut(s)	277
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
RseI	CAYNNNNRTG	1 cut(s)	272
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	2 cut(s)	292, 298
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	6 cut(s)	34, 82, 146, 204, 264, 366
SfoI	GGCGCC	1 cut(s)	97
Sfr274I	CTCGAG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	19
SlaI	CTCGAG	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	433
SsiI	CCGC	2 cut(s)	158, 281
SspDI	GGCGCC	1 cut(s)	95
SspMI	CTAG	2 cut(s)	71, 128
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	4 cut(s)	64, 217, 316, 378
TaiI	ACGT	2 cut(s)	82, 264
TaqI	TCGA	1 cut(s)	204
TasI	AATT	1 cut(s)	433
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	428
TscAI	CASTG	1 cut(s)	381
TseFI	GTSAC	3 cut(s)	211, 217, 262
Tsp45I	GTSAC	3 cut(s)	211, 217, 262
TspDTI	ATGAA	2 cut(s)	262, 302
TspRI	CASTG	1 cut(s)	381
Tth111I	GACNNNGTC	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	19
XbaI	TCTAGA	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XhoI	CTCGAG	1 cut(s)	203
XmaJI	CCTAGG	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	2 cut(s)	71, 128
ZraI	GACGTC	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.