Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Forward (+)

29726304 .. 29726992

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G302900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAAAACACAGGGGAGGAGAATGCGGTGCCGAGAGTTGCTGTAGTGATGTGCCTGTTGAAGGGGAAGACGGTGCTGTTAGGACGGCGTCGTTCCTCTCTTGGCGACTCTACCTTTTCCCTCCCTGGTGGCCACCTCGAGTTTGGTGAGAGTTTTGAGGAGTGTGCAGCGAGAGAAGTGAAGGAAGAAACTGGTTTGGACATTGACAAGGAGAAGATAGAGTTGCTGAGGGTCACAAACAACTTGTTCGTAGAGGAACTGAAGGCATACCACTACGTGGGGATTTTCACGAGAGCAGTGCTGACAGATGGCGATCATCGGGAGCCCCAGAATGTGGAGCCCAACATGTGTGACGGTTGGGATTGGTATGAGTGGGACCGCCTCCCACAACCACTGTTTTGGCCTTTGCAGAATGCAGTGGAGGCCGGATTTAATCCTTTTCATGCATCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

152

Amino Acids

17.17

Weight (kDa)

4.76

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	28
AccB7I	CCANNNNNTGG	2 cut(s)	277, 334
AciI	CCGC	2 cut(s)	26, 379
AcoI	YGGCCR	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	88
AdeI	CACNNNGTG	1 cut(s)	277
AfiI	CCNNNNNNNGG	3 cut(s)	61, 277, 334
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	124
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	3 cut(s)	130, 401, 423
ApeKI	GCWGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	376
AsuHPI	GGTGA	2 cut(s)	158, 441
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	376
BalI	TGGCCA	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	28
BanII	GRGCYC	2 cut(s)	327, 342
BauI	CACGAG	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	74
BbvCI	CCTCAGC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	280, 314
BciT130I	CCWGG	1 cut(s)	126
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	376
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	4 cut(s)	30, 324, 339, 377
BmrFI	CCNGG	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	74
Bpu10I	CCTNAGC	1 cut(s)	227
BsaAI	YACGTR	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	312
BsaHI	GRCGYC	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 277, 334
Bse1I	ACTGG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	3 cut(s)	61, 277, 334
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	2 cut(s)	32, 173
BseXI	GCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	186
BshFI	GGCC	3 cut(s)	132, 403, 425
BshNI	GGYRCC	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	426
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	3 cut(s)	61, 277, 334
BsmFI	GGGAC	1 cut(s)	389
BsmI	GAATGC	2 cut(s)	28, 418
BsnI	GGCC	3 cut(s)	132, 403, 425
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	327, 342
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	2 cut(s)	26, 379
BspANI	GGCC	3 cut(s)	132, 403, 425
BspCNI	CTCAG	1 cut(s)	219
BspLI	GGNNCC	4 cut(s)	30, 324, 339, 377
BspT107I	GGYRCC	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	1 cut(s)	313
BssNI	GRCGYC	1 cut(s)	88
BssSI	CACGAG	1 cut(s)	289
Bst2BI	CACGAG	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	3 cut(s)	73, 356, 396
BstACI	GRCGYC	1 cut(s)	88
BstBAI	YACGTR	1 cut(s)	277
BstDEI	CTNAG	1 cut(s)	227
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstKTI	GATC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	124
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	179
BstV2I	GAAGAC	1 cut(s)	74
BstXI	CCANNNNNNTGG	1 cut(s)	399
BsuRI	GGCC	3 cut(s)	132, 403, 425
BtsI	GCAGTG	2 cut(s)	303, 423
BtsIMutI	CAGTG	3 cut(s)	303, 392, 423
Cfr13I	GGNCC	1 cut(s)	376
CseI	GACGC	1 cut(s)	77
CviAII	CATG	3 cut(s)	346, 443, 453
CviJI	RGCY	5 cut(s)	132, 325, 340, 403, 425
CviKI_1	RGCY	5 cut(s)	132, 325, 340, 403, 425
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
DraIII	CACNNNGTG	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	130
Eco24I	GRGCYC	2 cut(s)	327, 342
Eco47I	GGWCC	1 cut(s)	376
Eco57I	CTGAAG	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	448
EcoT38I	GRGCYC	2 cut(s)	327, 342
FaeI	CATG	3 cut(s)	349, 446, 456
FaiI	YATR	5 cut(s)	268, 347, 369, 444, 454
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	3 cut(s)	345, 442, 452
Fnu4HI	GCNGC	1 cut(s)	168
FriOI	GRGCYC	2 cut(s)	327, 342
Fsp4HI	GCNGC	1 cut(s)	168
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	132, 403, 425
HapII	CCGG	1 cut(s)	426
HgaI	GACGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	3 cut(s)	349, 446, 456
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	2 cut(s)	158, 441
Hpy188III	TCNNGA	2 cut(s)	289, 320
Hpy99I	CGWCG	1 cut(s)	93
HpyAV	CCTTC	3 cut(s)	55, 175, 256
HpyCH4III	ACNGT	3 cut(s)	73, 356, 396
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	4 cut(s)	167, 409, 416, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	1 cut(s)	227
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	3 cut(s)	349, 446, 456
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	2 cut(s)	322, 337
LpnPI	CCDG	6 cut(s)	68, 111, 138, 177, 341, 439
Lsp1109I	GCAGC	1 cut(s)	179
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	2 cut(s)	232, 350
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	3 cut(s)	79, 197, 226
MhlI	GDGCHC	2 cut(s)	327, 342
MlsI	TGGCCA	1 cut(s)	132
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	9 cut(s)	10, 106, 131, 146, 151, 222, 247, 392, 415
Mox20I	TGGCCA	1 cut(s)	132
Mph1103I	ATGCAT	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	1 cut(s)	451
Msp20I	TGGCCA	1 cut(s)	132
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	1 cut(s)	126
Mva1269I	GAATGC	2 cut(s)	28, 418
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	422
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	3 cut(s)	349, 446, 456
NlaIV	GGNNCC	4 cut(s)	30, 324, 339, 377
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	2 cut(s)	232, 350
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	1 cut(s)	349
PaeR7I	CTCGAG	1 cut(s)	137
PciI	ACATGT	1 cut(s)	345
PctI	GAATGC	2 cut(s)	28, 418
PflFI	GACNNNGTC	1 cut(s)	87
PflMI	CCANNNNNTGG	2 cut(s)	277, 334
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Ppu21I	YACGTR	1 cut(s)	277
PscI	ACATGT	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	4 cut(s)	30, 324, 339, 377
PspPI	GGNCC	1 cut(s)	376
PspXI	VCTCGAGB	1 cut(s)	137
PsyI	GACNNNGTC	1 cut(s)	87
RseI	CAYNNNNRTG	1 cut(s)	451
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	2 cut(s)	327, 342
SetI	ASST	3 cut(s)	116, 138, 279
SfcI	CTRYAG	1 cut(s)	42
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	1 cut(s)	376
SlaI	CTCGAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	451
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SsiI	CCGC	2 cut(s)	26, 379
StyD4I	CCNGG	1 cut(s)	124
TaaI	ACNGT	3 cut(s)	73, 356, 396
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	3 cut(s)	303, 399, 423
TseFI	GTSAC	2 cut(s)	232, 350
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	2 cut(s)	232, 350
TspDTI	ATGAA	1 cut(s)	431
TspRI	CASTG	3 cut(s)	303, 399, 423
Tth111I	GACNNNGTC	1 cut(s)	87
Van91I	CCANNNNNTGG	2 cut(s)	277, 334
VpaK11BI	GGWCC	1 cut(s)	376
XagI	CCTNNNNNAGG	1 cut(s)	59
XceI	RCATGY	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XhoI	CTCGAG	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.