Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

51532288 .. 51538373

Gene Structure 6086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG355400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCAATGCTTTCCAGCAGCGGTGGTGGCGAGAGCTTTCAGGAGTGTGCAGCAAGGGAATTGAAGGAAGAAACTGGTTTAGACATTGACAAGATAGAGTTGCTAACTGTGACCAATAACCTGTTCCTAGACGAAGCCAAACCATCGCAGTACGTGGCTGTTTTCATGAGAGCAGTGCTGGCAGATCCTCGTCAAGAGCCCCAAAATATTGAACCAGAATTCTGTGATGGTTGGGGATGGTATGAATGGGACAATCTCCCGAAGCCACTTTTCTGGCCTTTGGAGAAAGTGGTGCAGGATGGATTTAACCCTTTTCCAACATTAGACAGCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

111

Amino Acids

12.6

Weight (kDa)

4.13

Isoelectric Point (pI)

54.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	10 - 98	1.7e-11	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	218
AfaI	GTAC	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	64, 212
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	2 cut(s)	36, 330
AluI	AGCT	2 cut(s)	36, 330
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	3 cut(s)	18, 50, 330
ApoI	RAATTY	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	201
BbvI	GCAGC	3 cut(s)	30, 62, 317
BccI	CCATC	4 cut(s)	151, 221, 231, 293
BfaI	CTAG	2 cut(s)	128, 334
BisI	GCNGC	3 cut(s)	19, 51, 331
BlsI	GCNGC	3 cut(s)	20, 52, 332
BsaAI	YACGTR	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	12
BseGI	GGATG	2 cut(s)	242, 304
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	79
BseXI	GCAGC	3 cut(s)	30, 62, 317
BsgI	GTGCAG	2 cut(s)	69, 314
BshFI	GGCC	1 cut(s)	277
BslFI	GGGAC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	277
BspHI	TCATGA	1 cut(s)	165
BspPI	GGATC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	79
BssMI	GATC	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	109
BstBAI	YACGTR	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	242, 304
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 179
BstV1I	GCAGC	3 cut(s)	30, 62, 317
BstX2I	RGATCY	1 cut(s)	184
BstXI	CCANNNNNNTGG	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	277
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	242, 304
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	180
CciI	TCATGA	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	7 cut(s)	36, 137, 158, 199, 265, 277, 330
CviKI_1	RGCY	7 cut(s)	36, 137, 158, 199, 265, 277, 330
CviQI	GTAC	1 cut(s)	151
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	201
FaeI	CATG	1 cut(s)	169
FaiI	YATR	2 cut(s)	167, 243
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	1 cut(s)	165
Fnu4HI	GCNGC	3 cut(s)	19, 51, 331
FokI	GGATG	2 cut(s)	249, 311
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	3 cut(s)	19, 51, 331
FspBI	CTAG	2 cut(s)	128, 334
GluI	GCNGC	3 cut(s)	19, 51, 331
HaeIII	GGCC	1 cut(s)	277
Hin1II	CATG	1 cut(s)	169
Hpy188III	TCNNGA	4 cut(s)	41, 166, 194, 259
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	2 cut(s)	50, 295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 179
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	184
LpnPI	CCDG	8 cut(s)	26, 28, 60, 134, 164, 228, 259, 281
Lsp1109I	GCAGC	3 cut(s)	30, 62, 317
MaeI	CTAG	2 cut(s)	128, 334
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	80
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	2 cut(s)	59, 218
MnlI	CCTC	1 cut(s)	198
MseI	TTAA	1 cut(s)	306
MspA1I	CMGCKG	2 cut(s)	21, 330
MwoI	GCNNNNNNNGC	2 cut(s)	27, 179
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	109
PagI	TCATGA	1 cut(s)	165
PkrI	GCNGC	3 cut(s)	20, 52, 332
Ppu21I	YACGTR	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	330
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	3 cut(s)	19, 51, 331
Sau3AI	GATC	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	4 cut(s)	38, 123, 156, 332
Sse9I	AATT	2 cut(s)	59, 218
SsiI	CCGC	1 cut(s)	21
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	2 cut(s)	128, 334
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	156
TasI	AATT	2 cut(s)	59, 218
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	3 cut(s)	18, 50, 330
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	154, 258
TspRI	CASTG	1 cut(s)	180
XapI	RAATTY	1 cut(s)	218
XspI	CTAG	2 cut(s)	128, 334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.