Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000600

Physical Location & Seq

Genomic Coordinates Reverse (-)

3551414 .. 3552068

Gene Structure 655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1050200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCCAAACGGGATTGCGGCCCCGAGAGTTGTGGTGGTAGTGTGCCTGTTGAAAGGGAAGAAGGTGCTGTTAGGACGCCGTCGTTCCTCCATTGGCGACTCCAAATTTTCCCTTCCTAGCGGCCACCTCGAGTTTGGTGAGAGCTTTGAGGAGTGTGCAGCAAGAGAACTGAAGGAAGAAACTGATTTGGACATCAAGAATATAGAGCTGCTGACTGTCACAAACCATGTGTTCCTCGAGGAAGCGAAGCCGTGCCAGTACGTGGTGATTGTGACCAGAGCAGTGTTGGCAGATGAAGATCAAGAGCCCCAGAATATGGAGCCCAACATGTGCGGTTGGGATTGGTACGAGTGGGACAATCTCCCTAAACCACTCTTTTGGCCTTTGGAGAAGGCGGTGCAGGCTGGATTTAATCCCTTCCGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

143

Amino Acids

16.14

Weight (kDa)

4.98

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	9 - 127	6.6e-20	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68760
fragaria_vesca	FvH4_4g28300 FvH4_4g28310 FvH4_4g28310 FvH4_4g28310 FvH4_4g28340 FvH4_6g24180
malus_domestica	MD13G1048800.v1.1 MD13G1048900.v1.1 MD13G1049100.v1.1 MD16G1050100.v1.1 MD16G1050200.v1.1
prunus_persica	Prupe.1G302800_v2.0.a1 Prupe.1G302900_v2.0.a1 Prupe.1G303000_v2.0.a1
pyrus_communis	pycom13g04320 pycom13g04330 pycom16g04390 pycom16g04400
rosa_chinensis	RchiOBHm_Chr2g0142051 RchiOBHm_Chr2g0142061 RchiOBHm_Chr2g0142071 RchiOBHm_Chr2g0142081 RchiOBHm_Chr2g0142111 RchiOBHm_Chr2g0142121 RchiOBHm_Chr4g0436151 RchiOBHm_Chr4g0436181 RchiOBHm_Chr4g0436191 RchiOBHm_Chr6g0244161
rosa_laevigata	RLG00000002289 RLG00000006530 RLG00000006533 RLG00000006536 RLG00000013159
rosa_multiflora	Rmu_sc0001455.1_g000026 Rmu_sc0003272.1_g000006 Rmu_sc0003767.1_g000006 Rmu_sc0009199.1_g000001 Rmu_sc0009199.1_g000003
rosa_roxburghii	Rroxscaffold_3G00240040 Rroxscaffold_5G00377250 Rroxscaffold_5G00377340 Rroxscaffold_5G00377380 Rroxscaffold_5G00377390 Rroxscaffold_7G00216030
rosa_rugosa	Rorug02G0370100 Rorug02G0370200 Rorug02G0370300 Rorug02G0370300 Rorug02G0370300 Rorug02G0370400 Rorug02G0370500 Rorug02G0370600 Rorug04G0292300 Rorug04G0292400 Rorug07G0185300 Rorug07G0216500 Rorug07G0216600
rosa_samantha	Rh4AG346400 Rh4AG346700 Rh4BG355400 Rh4BG355500 Rh4BG355600 Rh4CG370100 Rh4CG370200 Rh4CG370300 Rh4DG349100 Rh4DG349300 Rh6AG022300 Rh6BG018000 Rh7AG328100 Rh7BG318100 Rh7BG350300 Rh7CG345500 Rh7DG324100
rosa_wichuraiana	Rw4G030280 Rw4G030290 Rw4G030300 Rw6G001830 Rw7G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	236
AccB7I	CCANNNNNTGG	2 cut(s)	262, 316
AciI	CCGC	4 cut(s)	17, 120, 333, 395
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	76
AfaI	GTAC	2 cut(s)	260, 347
AfiI	CCNNNNNNNGG	2 cut(s)	262, 316
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	1 cut(s)	52
AluBI	AGCT	2 cut(s)	144, 208
AluI	AGCT	2 cut(s)	144, 208
Ama87I	CYCGRG	3 cut(s)	22, 128, 236
AoxI	GGCC	3 cut(s)	18, 121, 380
ApeKI	GCWGC	2 cut(s)	158, 208
ApoI	RAATTY	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	149, 277
AvaI	CYCGRG	3 cut(s)	22, 128, 236
BanII	GRGCYC	2 cut(s)	309, 324
BbvI	GCAGC	2 cut(s)	170, 195
BceAI	ACGGC	2 cut(s)	63, 235
BfaI	CTAG	1 cut(s)	117
BisI	GCNGC	4 cut(s)	18, 121, 159, 209
BlsI	GCNGC	4 cut(s)	19, 122, 160, 210
BmeT110I	CYCGRG	3 cut(s)	22, 128, 236
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	2 cut(s)	21, 321
BsaAI	YACGTR	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 316
Bse1I	ACTGG	1 cut(s)	256
Bse8I	GATNNNNATC	1 cut(s)	297
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	2 cut(s)	262, 316
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	170, 195
BsgI	GTGCAG	2 cut(s)	177, 419
BshFI	GGCC	3 cut(s)	20, 123, 382
BsiHKCI	CYCGRG	3 cut(s)	22, 128, 236
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	2 cut(s)	262, 316
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	3 cut(s)	20, 123, 382
BsoBI	CYCGRG	3 cut(s)	22, 128, 236
Bsp1286I	GDGCHC	2 cut(s)	309, 324
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	4 cut(s)	17, 120, 333, 395
BspANI	GGCC	3 cut(s)	20, 123, 382
BspLI	GGNNCC	2 cut(s)	21, 321
BsrI	ACTGG	1 cut(s)	256
BssMI	GATC	1 cut(s)	298
BssNI	GRCGYC	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	217
BstACI	GRCGYC	1 cut(s)	76
BstBAI	YACGTR	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	402
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 401
BstNSI	RCATGY	1 cut(s)	331
BstV1I	GCAGC	2 cut(s)	170, 195
BstXI	CCANNNNNNTGG	1 cut(s)	378
BsuRI	GGCC	3 cut(s)	20, 123, 382
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	19
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	259, 346
CviAII	CATG	3 cut(s)	227, 328, 426
CviJI	RGCY	9 cut(s)	20, 123, 144, 208, 250, 307, 322, 382, 404
CviKI_1	RGCY	9 cut(s)	20, 123, 144, 208, 250, 307, 322, 382, 404
CviQI	GTAC	2 cut(s)	259, 346
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	121
Eco24I	GRGCYC	2 cut(s)	309, 324
Eco57I	CTGAAG	1 cut(s)	191
Eco88I	CYCGRG	3 cut(s)	22, 128, 236
EcoT38I	GRGCYC	2 cut(s)	309, 324
FaeI	CATG	3 cut(s)	230, 331, 429
FaiI	YATR	5 cut(s)	203, 228, 317, 329, 427
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	3 cut(s)	226, 327, 425
Fnu4HI	GCNGC	4 cut(s)	18, 121, 159, 209
FriOI	GRGCYC	2 cut(s)	309, 324
Fsp4HI	GCNGC	4 cut(s)	18, 121, 159, 209
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	4 cut(s)	18, 121, 159, 209
HaeIII	GGCC	3 cut(s)	20, 123, 382
HgaI	GACGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	76
Hin1II	CATG	3 cut(s)	230, 331, 429
HinfI	GANTC	1 cut(s)	98
HphI	GGTGA	2 cut(s)	149, 277
Hpy188III	TCNNGA	2 cut(s)	196, 302
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	5 cut(s)	55, 122, 166, 385, 427
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	2 cut(s)	158, 400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 401
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	1 cut(s)	76
Hsp92II	CATG	3 cut(s)	230, 331, 429
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	6 cut(s)	59, 269, 289, 323, 386, 390
Lsp1109I	GCAGC	2 cut(s)	170, 195
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	2 cut(s)	217, 271
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	3 cut(s)	70, 188, 308
MhlI	GDGCHC	2 cut(s)	309, 324
MluCI	AATT	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	5 cut(s)	97, 137, 142, 232, 245
MseI	TTAA	1 cut(s)	411
MwoI	GCNNNNNNNGC	2 cut(s)	287, 401
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	230, 331, 429
NlaIV	GGNNCC	2 cut(s)	21, 321
NmuCI	GTSAC	2 cut(s)	217, 271
NspI	RCATGY	1 cut(s)	331
PaeR7I	CTCGAG	2 cut(s)	128, 236
PciI	ACATGT	1 cut(s)	327
PflFI	GACNNNGTC	1 cut(s)	78
PflMI	CCANNNNNTGG	2 cut(s)	262, 316
PkrI	GCNGC	4 cut(s)	19, 122, 160, 210
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Ppu21I	YACGTR	1 cut(s)	262
PscI	ACATGT	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	21, 321
PspPI	GGNCC	1 cut(s)	19
PspXI	VCTCGAGB	2 cut(s)	128, 236
PsyI	GACNNNGTC	1 cut(s)	78
RsaI	GTAC	2 cut(s)	260, 347
RsaNI	GTAC	2 cut(s)	259, 346
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	4 cut(s)	18, 121, 159, 209
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	92
SduI	GDGCHC	2 cut(s)	309, 324
SetI	ASST	5 cut(s)	66, 129, 146, 210, 264
Sfr274I	CTCGAG	2 cut(s)	128, 236
SlaI	CTCGAG	2 cut(s)	128, 236
SmlI	CTYRAG	2 cut(s)	128, 236
SmoI	CTYRAG	2 cut(s)	128, 236
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	4 cut(s)	17, 120, 333, 395
SspMI	CTAG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	129, 237
TasI	AATT	1 cut(s)	104
TauI	GCSGC	2 cut(s)	20, 123
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	2 cut(s)	217, 271
TseI	GCWGC	2 cut(s)	158, 208
Tsp45I	GTSAC	2 cut(s)	217, 271
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	1 cut(s)	288
Tth111I	GACNNNGTC	1 cut(s)	78
Van91I	CCANNNNNTGG	2 cut(s)	262, 316
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	1 cut(s)	331
XcmI	CCANNNNNNNNNTGG	2 cut(s)	131, 283
XhoI	CTCGAG	2 cut(s)	128, 236
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.