Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Forward (+)

9671673 .. 9673928

Gene Structure 2256 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G22750.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAACTCACTCGTCGGAGATGTTCCACAGTCTCTCTCATCTCTTGATGATACCACCACTTGTTATAACCTTGATGCTTCTTGTAATAAAAGTTTGGTAGAAGAAAGACCTTCAAAGATCCTCAAGACCACTCACATATCACCAAACTTACATCCTTTTTCTTCTTCTAATCCTCCTCCTCCAAAGCACCAGCCCTCTTCTAGGATTCTTTCTTTTGAAAAGACAGGTTTACATGTTATGAATCACAACTCTCCAAACTTAATATTTAGCCCCAAGGACGAAGAAATTGGATTACCAGAGCATAAGAAAGCCGAGCTGATAATAAGAGGGACAAAGAGAGCTCAATCCTTGACTCGAAGCCAATCAAATGCTCAAGATCACATACTGGCAGAGAGAAAACGGAGAGAGAAGCTTACTCAAAGATTTGTAGCTCTTTCCGCGCTAATTCCTGGCCTAAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCAATAAAGCATATAAAGTACCTCCAAGAGAGTGTGAAAGAGTATGAGGAACAAAAGAAGGAAAAGACAATGGAATCAGTGGTTCTTGTAAAGAAGTCTAGTCTGGTTTTAGATGAAAATCATCAACCATCATCATCATCTTCCTCAGATGGAAATCGCAATAGCTCGAGCTCAAATCTTCCAGAAATAGAAGTTAGGGTTTCAGGAAAAGATGTTCTTATTAAGATCCTATGCGAGAAGCAAAAGGGTAATGTGATCAAGATTATGGGGGAGATTGAAAAGCTTGGTTTGTCTATCACCAACAGCAATGTCTTGCCCTTTGGACCCACTTTTGACATCTCTATTATCGCTCAGAATAACAATTTTGATATGAAAATCGAGGATGTTGTGAAGAACTTGAGTTTTGGCTTATCAAAGCTCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

304

Amino Acids

33.73

Weight (kDa)

9.05

Isoelectric Point (pI)

63.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	151 - 196	3.5e-11	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	249 - 291	1.5e-06	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	66
AccII	CGCG	1 cut(s)	440
AciI	CCGC	1 cut(s)	438
AclWI	GGATC	2 cut(s)	112, 709
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	1 cut(s)	201
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	114, 218, 767
AjnI	CCWGG	1 cut(s)	448
AloI	GAACNNNNNNTCC	2 cut(s)	687, 719
AluBI	AGCT	8 cut(s)	316, 341, 412, 431, 654, 660, 772, 907
AluI	AGCT	8 cut(s)	316, 341, 412, 431, 654, 660, 772, 907
Alw21I	GWGCWC	2 cut(s)	343, 662
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	2 cut(s)	112, 709
Ama87I	CYCGRG	1 cut(s)	655
AoxI	GGCC	1 cut(s)	451
AspLEI	GCGC	1 cut(s)	442
AspS9I	GGNCC	1 cut(s)	812
AsuHPI	GGTGA	2 cut(s)	132, 778
AvaI	CYCGRG	1 cut(s)	655
AvaII	GGWCC	1 cut(s)	812
BanII	GRGCYC	2 cut(s)	343, 662
Bbv12I	GWGCWC	2 cut(s)	343, 662
BccI	CCATC	3 cut(s)	457, 625, 632
BciT130I	CCWGG	1 cut(s)	450
BclI	TGATCA	1 cut(s)	744
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	2 cut(s)	201, 588
Bme1390I	CCNGG	1 cut(s)	450
Bme18I	GGWCC	1 cut(s)	812
BmeT110I	CYCGRG	1 cut(s)	655
BmgT120I	GGNCC	1 cut(s)	812
BmiI	GGNNCC	1 cut(s)	814
BmrFI	CCNGG	1 cut(s)	450
BmsI	GCATC	2 cut(s)	64, 478
BpuEI	CTTGAG	3 cut(s)	107, 357, 907
BsaBI	GATNNNNATC	2 cut(s)	606, 642
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	390
Bse3DI	GCAATG	1 cut(s)	802
Bse8I	GATNNNNATC	2 cut(s)	606, 642
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	2 cut(s)	151, 877
BseJI	GATNNNNATC	2 cut(s)	606, 642
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMI	GCAATG	1 cut(s)	802
BseMII	CTCAG	2 cut(s)	648, 854
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	2 cut(s)	165, 168
Bsh1236I	CGCG	1 cut(s)	440
BshFI	GGCC	1 cut(s)	453
BsiHKAI	GWGCWC	2 cut(s)	343, 662
BsiHKCI	CYCGRG	1 cut(s)	655
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	453
BsoBI	CYCGRG	1 cut(s)	655
Bsp1286I	GDGCHC	2 cut(s)	343, 662
Bsp143I	GATC	4 cut(s)	117, 376, 714, 744
BspACI	CCGC	1 cut(s)	438
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	2 cut(s)	647, 853
BspFNI	CGCG	1 cut(s)	440
BspLI	GGNNCC	1 cut(s)	814
BspPI	GGATC	2 cut(s)	112, 709
BsrDI	GCAATG	1 cut(s)	802
BsrI	ACTGG	1 cut(s)	390
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	4 cut(s)	117, 376, 714, 744
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	634, 840
BstENI	CCTNNNNNAGG	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	151, 877
BstFNI	CGCG	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	4 cut(s)	120, 379, 717, 747
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	4 cut(s)	117, 376, 714, 744
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	448
BstUI	CGCG	1 cut(s)	440
BstX2I	RGATCY	2 cut(s)	117, 714
BstYI	RGATCY	2 cut(s)	117, 714
BsuRI	GGCC	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	151, 877
BtsIMutI	CAGTG	1 cut(s)	573
CfoI	GCGC	1 cut(s)	442
Cfr13I	GGNCC	1 cut(s)	812
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	1 cut(s)	233
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	2 cut(s)	634, 840
DpnI	GATC	4 cut(s)	119, 378, 716, 746
DpnII	GATC	4 cut(s)	117, 376, 714, 744
Eam1104I	CTCTTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	202
Ecl136II	GAGCTC	2 cut(s)	341, 660
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	2 cut(s)	343, 662
Eco47I	GGWCC	1 cut(s)	812
Eco53kI	GAGCTC	2 cut(s)	341, 660
Eco88I	CYCGRG	1 cut(s)	655
EcoICRI	GAGCTC	2 cut(s)	341, 660
EcoNI	CCTNNNNNAGG	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	2 cut(s)	343, 662
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	1 cut(s)	236
FalI	AAGNNNNNCTT	2 cut(s)	690, 722
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	1 cut(s)	232
FbaI	TGATCA	1 cut(s)	744
FokI	GGATG	2 cut(s)	138, 884
FriOI	GRGCYC	2 cut(s)	343, 662
FspBI	CTAG	2 cut(s)	201, 588
GlaI	GCGC	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	453
HhaI	GCGC	1 cut(s)	442
Hin1II	CATG	1 cut(s)	236
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HindIII	AAGCTT	2 cut(s)	410, 770
HinfI	GANTC	4 cut(s)	205, 241, 352, 563
HphI	GGTGA	2 cut(s)	132, 778
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	3 cut(s)	17, 637, 843
Hpy188III	TCNNGA	6 cut(s)	44, 124, 374, 671, 693, 748
Hpy8I	GTNNAC	1 cut(s)	230
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	120, 541
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	2 cut(s)	634, 840
Hsp92II	CATG	1 cut(s)	236
HspAI	GCGC	1 cut(s)	440
Ksp22I	TGATCA	1 cut(s)	744
Kzo9I	GATC	4 cut(s)	117, 376, 714, 744
LpnPI	CCDG	9 cut(s)	203, 210, 309, 371, 435, 462, 578, 678, 684
LweI	GCATC	2 cut(s)	64, 478
MaeI	CTAG	2 cut(s)	201, 588
MalI	GATC	4 cut(s)	119, 378, 716, 746
MboI	GATC	4 cut(s)	117, 376, 714, 744
MboII	GAAGA	9 cut(s)	113, 153, 156, 189, 293, 472, 621, 659, 892
MflI	RGATCY	2 cut(s)	117, 714
MhlI	GDGCHC	2 cut(s)	343, 662
MluCI	AATT	3 cut(s)	285, 444, 850
MlyI	GAGTC	1 cut(s)	346
MseI	TTAA	3 cut(s)	260, 711, 913
MspR9I	CCNGG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	450
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeII	GATC	4 cut(s)	117, 376, 714, 744
NlaIII	CATG	1 cut(s)	236
NlaIV	GGNNCC	1 cut(s)	814
NmeAIII	GCCGAG	1 cut(s)	337
NspI	RCATGY	1 cut(s)	236
PaeR7I	CTCGAG	1 cut(s)	655
PciI	ACATGT	1 cut(s)	232
PfeI	GAWTC	3 cut(s)	205, 241, 563
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PscI	ACATGT	1 cut(s)	232
PsiI	TTATAA	1 cut(s)	66
Psp124BI	GAGCTC	2 cut(s)	343, 662
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	814
PspPI	GGNCC	1 cut(s)	812
PspXI	VCTCGAGB	1 cut(s)	655
PsuI	RGATCY	2 cut(s)	117, 714
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
SacI	GAGCTC	2 cut(s)	343, 662
SaqAI	TTAA	3 cut(s)	260, 711, 913
Sau3AI	GATC	4 cut(s)	117, 376, 714, 744
Sau96I	GGNCC	1 cut(s)	812
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	450
SduI	GDGCHC	2 cut(s)	343, 662
SfaNI	GCATC	2 cut(s)	64, 478
Sfr274I	CTCGAG	1 cut(s)	655
SinI	GGWCC	1 cut(s)	812
SlaI	CTCGAG	1 cut(s)	655
SmlI	CTYRAG	4 cut(s)	122, 372, 655, 886
SmoI	CTYRAG	4 cut(s)	122, 372, 655, 886
Sse9I	AATT	3 cut(s)	285, 444, 850
SsiI	CCGC	1 cut(s)	438
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	2 cut(s)	201, 588
SstI	GAGCTC	2 cut(s)	343, 662
StyD4I	CCNGG	1 cut(s)	448
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	30
TaqI	TCGA	3 cut(s)	355, 656, 867
TasI	AATT	3 cut(s)	285, 444, 850
TfiI	GAWTC	3 cut(s)	205, 241, 563
Tru1I	TTAA	3 cut(s)	260, 711, 913
Tru9I	TTAA	3 cut(s)	260, 711, 913
TscAI	CASTG	1 cut(s)	573
TspDTI	ATGAA	4 cut(s)	17, 254, 618, 875
TspGWI	ACGGA	1 cut(s)	415
TspRI	CASTG	1 cut(s)	573
VpaK11BI	GGWCC	1 cut(s)	812
XagI	CCTNNNNNAGG	1 cut(s)	199
XceI	RCATGY	1 cut(s)	236
XhoI	CTCGAG	1 cut(s)	655
XspI	CTAG	2 cut(s)	201, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.