RLG00000005489

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000792
Physical Location & Seq
Reverse (-)
68046457 .. 68047343
887 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005489

Sequence Viewer

Length: 519 bp
ATGGACAAGGGATCAAGAGGACTGCTATTAGCGTCGAGAAAATCTCAGGCAGCGGTTCATTGCTCTATCAGCCCTGCTACCAGGCCTAAAGAAGGTACATATATCAGTAAAGCTTCCGTGCTTGAAGAGGCCACAAAATACGCGAAACATCTTCAAGAACGTATGGTGATACTGGAGGAACAATCGGTGGTTTTAGTGAGGAGAACTCAGTACTCATCAGGGGATGATGATAACTCTTTCTCTGATGAGAGCTTCGGCAGCTGCTCTGACCGGCAACTCCCTAAAATTGAAGCTTGGTTTTTGGACAGAGAGGTTCTCATACGAATCCACTGTGAGAAAAAGAAAGGATGTTTGGCAAACATATTAAGTGAAATAGAGACTCTTGATCTCACCATTGTTAATGGCAGTATCTCGAGACTCTTGTTCTCACCATTGTTAATAGCAATGGACGTCCAGTTCAGCATGACGGTGGCGGATCTTGTAAGAAATCTAAAACAGGCTTTGCTCTTATTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

173

Amino Acids

19.2

Weight (kDa)

6.83

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 453
AccII CGCG 1 cut(s) 143
AciI CCGC 2 cut(s) 53, 473
AclWI GGATC 2 cut(s) 19, 483
AcyI GRCGYC 1 cut(s) 450
AfaI GTAC 2 cut(s) 97, 212
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 3 cut(s) 125, 155, 290
AjnI CCWGG 1 cut(s) 80
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AloI GAACNNNNNNTCC 2 cut(s) 440, 472
AluBI AGCT 4 cut(s) 113, 252, 261, 293
AluI AGCT 4 cut(s) 113, 252, 261, 293
Alw26I GTCTC 2 cut(s) 371, 409
AlwI GGATC 2 cut(s) 19, 483
Ama87I CYCGRG 1 cut(s) 412
AoxI GGCC 2 cut(s) 83, 129
ApeKI GCWGC 3 cut(s) 50, 258, 261
AsuHPI GGTGA 3 cut(s) 178, 382, 420
AvaI CYCGRG 1 cut(s) 412
BbvI GCAGC 3 cut(s) 62, 248, 270
BciT130I CCWGG 1 cut(s) 82
BcoDI GTCTC 2 cut(s) 371, 409
BisI GCNGC 3 cut(s) 51, 259, 262
BlsI GCNGC 3 cut(s) 52, 260, 263
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 412
BmrFI CCNGG 1 cut(s) 82
BplI GAGNNNNNCTC 6 cut(s) 28, 60, 190, 222, 300, 332
BpmI CTGGAG 1 cut(s) 194
BsaHI GRCGYC 1 cut(s) 450
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse118I RCCGGY 1 cut(s) 270
Bse1I ACTGG 2 cut(s) 177, 454
Bse3DI GCAATG 2 cut(s) 58, 450
BseBI CCWGG 1 cut(s) 82
BseGI GGATG 2 cut(s) 229, 353
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMI GCAATG 2 cut(s) 58, 450
BseMII CTCAG 2 cut(s) 59, 221
BseNI ACTGG 2 cut(s) 177, 454
BseRI GAGGAG 1 cut(s) 214
BseXI GCAGC 3 cut(s) 62, 248, 270
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 2 cut(s) 85, 131
BsiHKCI CYCGRG 1 cut(s) 412
BsiSI CCGG 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 2 cut(s) 371, 409
BsnI GGCC 2 cut(s) 85, 131
BsoBI CYCGRG 1 cut(s) 412
Bsp143I GATC 3 cut(s) 11, 385, 475
BspACI CCGC 2 cut(s) 53, 473
BspANI GGCC 2 cut(s) 85, 131
BspCNI CTCAG 2 cut(s) 58, 220
BspFNI CGCG 1 cut(s) 143
BspPI GGATC 2 cut(s) 19, 483
BsrDI GCAATG 2 cut(s) 58, 450
BsrFI RCCGGY 1 cut(s) 270
BsrI ACTGG 2 cut(s) 177, 454
BssAI RCCGGY 1 cut(s) 270
BssMI GATC 3 cut(s) 11, 385, 475
BssNI GRCGYC 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 82
Bst4CI ACNGT 2 cut(s) 332, 469
Bst6I CTCTTC 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 450
BstDEI CTNAG 2 cut(s) 45, 207
BstENI CCTNNNNNAGG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 229, 353
BstFNI CGCG 1 cut(s) 143
BstKTI GATC 3 cut(s) 14, 388, 478
BstMAI GTCTC 2 cut(s) 371, 409
BstMBI GATC 3 cut(s) 11, 385, 475
BstMWI GCNNNNNNNGC 2 cut(s) 69, 258
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 80
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 3 cut(s) 62, 248, 270
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BsuRI GGCC 2 cut(s) 85, 131
BtsCI GGATG 2 cut(s) 229, 353
BtsIMutI CAGTG 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 270
CseI GACGC 1 cut(s) 21
Csp6I GTAC 2 cut(s) 96, 211
CviAII CATG 1 cut(s) 463
CviJI RGCY 8 cut(s) 72, 85, 113, 131, 252, 261, 293, 500
CviKI_1 RGCY 8 cut(s) 72, 85, 113, 131, 252, 261, 293, 500
CviQI GTAC 2 cut(s) 96, 211
DdeI CTNAG 2 cut(s) 45, 207
DpnI GATC 3 cut(s) 13, 387, 477
DpnII GATC 3 cut(s) 11, 385, 475
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
EciI GGCGGA 1 cut(s) 488
Eco147I AGGCCT 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 412
EcoNI CCTNNNNNAGG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 80
FaeI CATG 1 cut(s) 466
FaiI YATR 6 cut(s) 100, 102, 164, 320, 362, 464
FatI CATG 1 cut(s) 462
Fnu4HI GCNGC 3 cut(s) 51, 259, 262
FokI GGATG 2 cut(s) 236, 360
Fsp4HI GCNGC 3 cut(s) 51, 259, 262
GluI GCNGC 3 cut(s) 51, 259, 262
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 2 cut(s) 85, 131
HapII CCGG 1 cut(s) 271
HgaI GACGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 450
Hin1II CATG 1 cut(s) 466
HindIII AAGCTT 2 cut(s) 111, 291
HinfI GANTC 3 cut(s) 324, 379, 417
HpaII CCGG 1 cut(s) 271
HphI GGTGA 3 cut(s) 178, 382, 420
Hpy188I TCNGA 2 cut(s) 244, 268
Hpy188III TCNNGA 6 cut(s) 15, 36, 155, 383, 412, 414
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 86
HpyCH4III ACNGT 2 cut(s) 332, 469
HpyCH4IV ACGT 2 cut(s) 160, 450
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 258
HpyF3I CTNAG 2 cut(s) 45, 207
HpySE526I ACGT 2 cut(s) 160, 450
Hsp92I GRCGYC 1 cut(s) 450
Hsp92II CATG 1 cut(s) 466
Kzo9I GATC 3 cut(s) 11, 385, 475
LpnPI CCDG 9 cut(s) 32, 67, 87, 94, 158, 204, 284, 467, 482
Lsp1109I GCAGC 3 cut(s) 62, 248, 270
MaeII ACGT 2 cut(s) 160, 450
MalI GATC 3 cut(s) 13, 387, 477
MboI GATC 3 cut(s) 11, 385, 475
MboII GAAGA 2 cut(s) 137, 143
MflI RGATCY 1 cut(s) 475
MluCI AATT 1 cut(s) 285
MlyI GAGTC 2 cut(s) 373, 411
MnlI CCTC 5 cut(s) 11, 121, 169, 192, 304
MseI TTAA 3 cut(s) 365, 399, 437
MslI CAYNNNNRTG 1 cut(s) 467
MspA1I CMGCKG 2 cut(s) 53, 261
MspI CCGG 1 cut(s) 271
MspR9I CCNGG 1 cut(s) 82
MvaI CCWGG 1 cut(s) 82
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 69, 258
NdeII GATC 3 cut(s) 11, 385, 475
NlaIII CATG 1 cut(s) 466
PaeR7I CTCGAG 1 cut(s) 412
PceI AGGCCT 1 cut(s) 85
PfeI GAWTC 1 cut(s) 324
PkrI GCNGC 3 cut(s) 52, 260, 263
PleI GAGTC 2 cut(s) 373, 411
PpsI GAGTC 2 cut(s) 373, 411
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 475
PvuII CAGCTG 1 cut(s) 261
RsaI GTAC 2 cut(s) 97, 212
RsaNI GTAC 2 cut(s) 96, 211
RseI CAYNNNNRTG 1 cut(s) 467
SaqAI TTAA 3 cut(s) 365, 399, 437
SatI GCNGC 3 cut(s) 51, 259, 262
Sau3AI GATC 3 cut(s) 11, 385, 475
ScaI AGTACT 1 cut(s) 212
SchI GAGTC 2 cut(s) 373, 411
ScrFI CCNGG 1 cut(s) 82
SetI ASST 8 cut(s) 97, 115, 163, 254, 263, 295, 315, 453
Sfr274I CTCGAG 1 cut(s) 412
SlaI CTCGAG 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
Sse9I AATT 1 cut(s) 285
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 2 cut(s) 53, 473
StuI AGGCCT 1 cut(s) 85
StyD4I CCNGG 1 cut(s) 80
TaaI ACNGT 2 cut(s) 332, 469
TaiI ACGT 2 cut(s) 163, 453
TaqI TCGA 2 cut(s) 35, 413
TasI AATT 1 cut(s) 285
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 1 cut(s) 324
Tru1I TTAA 3 cut(s) 365, 399, 437
Tru9I TTAA 3 cut(s) 365, 399, 437
TscAI CASTG 1 cut(s) 335
TseI GCWGC 3 cut(s) 50, 258, 261
TspDTI ATGAA 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 1 cut(s) 335
XagI CCTNNNNNAGG 1 cut(s) 90
XhoI CTCGAG 1 cut(s) 412
ZraI GACGTC 1 cut(s) 451
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.