Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Reverse (-)

19100024 .. 19102679

Gene Structure 2656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1115500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAGATTTCATCAAGAGGAGGATTATCTGAGCTGGGAATGGAAGATCCCTTCTTCATCAACCAGTGGCAGTACATGAACTCTTTGGATGAGCTCGGTATGCTCCCACTAGCAGCTGCAATTGGAGATAATTTACAACACTCTCACTTCCACCCAACTTTCAACCTCAAAACTCCTATCGATAATTCTCATACTGGTATTGATAGACCAGCGAAGCAGCTCAAAACCGATGGATGGACTTCATGCAAAACCGATCATCTTGTATTGAATCCACAAGTTGCTTCCTCACCAAACATTCTTTCGTTCGTCAATTCTAATCACGGAAACCAAATGGTGGTGCTTAAGCCTAAGGAGGAGGCAGCAGCAGTGTGTTCAAAGAGCACCAACACTCTCCCTTCTGATATATTGCTTTCTCAAGGTTCATTTGGAAACCAAAATTGTTTATTTAAGGCCAGTCAGGGAACAAATAGGAACAGCACAAACCCTCGTCTTTCAGCAACTCAAGATCATATTATCGCAGAAAGGAAGCGCAGAGAGAAGCTCAGCCAGCGGTTCGTAGCTTTATCTGCACTCATTCCTGGCCTAAAGAAGATGGACAAGGCTTCTGTTCTGGGAGATTCAATCAAGTACATCAAACAACTGCAGGACAAGGTAAAGACACTTGAGGAACATACGAGAAACAAAAACATGGAATCGGTCGTGTTTGTGAAGAAAACACAGCTCTTTGCCAATGGCGACAAAACTTCCTCAAACGAAAACAACTCCACGGGCCCGTTTGACGCAACACTACCTGAAATCGAAGCAAGGTTCTGTGACAACAATGTCTTGATAAGAATCCACTGTGAGAAAAGGAAAGGAGTTGTGGAGAAAACAATATCGGAGGTTGAGAAGCTCCAATTAAAATTCATCAATAGTAGTGTCATGACATTTGGGAGCTGTGCTCTTGATGTTACCATTATTGCTCAGATGGAAGCGGAGTTCAGTCTCTCGGTGCAGGATCTCGTCAAGAATCTACGCACAGCTTTCAATCTGTTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

347

Amino Acids

38.49

Weight (kDa)

8.44

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	170 - 215	4.7e-11	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	821
AccB7I	CCANNNNNTGG	1 cut(s)	334
AciI	CCGC	2 cut(s)	550, 974
AclWI	GGATC	2 cut(s)	41, 1005
AcsI	RAATTY	1 cut(s)	902
AfaI	GTAC	2 cut(s)	74, 629
AfiI	CCNNNNNNNGG	2 cut(s)	234, 334
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	5 cut(s)	163, 268, 375, 621, 1027
AjnI	CCWGG	1 cut(s)	577
AjuI	GAANNNNNNNTTGG	2 cut(s)	283, 315
AloI	GAACNNNNNNTCC	2 cut(s)	962, 994
Alw21I	GWGCWC	3 cut(s)	96, 383, 943
Alw26I	GTCTC	1 cut(s)	989
AlwI	GGATC	2 cut(s)	41, 1005
AoxI	GGCC	3 cut(s)	450, 580, 769
ApaI	GGGCCC	1 cut(s)	773
ApeKI	GCWGC	5 cut(s)	113, 116, 217, 359, 362
ApoI	RAATTY	1 cut(s)	902
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	2 cut(s)	769, 770
AsuHPI	GGTGA	1 cut(s)	279
AxyI	CCTNAGG	1 cut(s)	348
BaeGI	GKGCMC	1 cut(s)	773
BanII	GRGCYC	2 cut(s)	96, 773
Bbv12I	GWGCWC	3 cut(s)	96, 383, 943
BbvI	GCAGC	5 cut(s)	103, 125, 229, 371, 374
BccI	CCATC	4 cut(s)	224, 228, 586, 961
BciT130I	CCWGG	1 cut(s)	579
BcoDI	GTCTC	1 cut(s)	989
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	641
BfrI	CTTAAG	1 cut(s)	341
BisI	GCNGC	5 cut(s)	114, 117, 218, 360, 363
BlpI	GCTNAGC	1 cut(s)	542
BlsI	GCNGC	5 cut(s)	115, 118, 219, 361, 364
Bme1390I	CCNGG	1 cut(s)	579
BmgT120I	GGNCC	2 cut(s)	769, 770
BmiI	GGNNCC	1 cut(s)	771
BmrFI	CCNGG	1 cut(s)	579
BplI	GAGNNNNNCTC	4 cut(s)	525, 557, 925, 957
Bpu1102I	GCTNAGC	1 cut(s)	542
BpuEI	CTTGAG	3 cut(s)	399, 486, 683
Bsa29I	ATCGAT	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	833
BsaJI	CCNNGG	1 cut(s)	765
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 334
Bse1I	ACTGG	3 cut(s)	64, 199, 453
Bse21I	CCTNAGG	1 cut(s)	348
Bse8I	GATNNNNATC	1 cut(s)	833
BseBI	CCWGG	1 cut(s)	579
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	765
BseGI	GGATG	2 cut(s)	94, 239
BseJI	GATNNNNATC	1 cut(s)	833
BseLI	CCNNNNNNNGG	2 cut(s)	234, 334
BseMII	CTCAG	3 cut(s)	21, 556, 977
BseNI	ACTGG	3 cut(s)	64, 199, 453
BseRI	GAGGAG	2 cut(s)	33, 368
BseSI	GKGCMC	1 cut(s)	773
BseXI	GCAGC	5 cut(s)	103, 125, 229, 371, 374
BseYI	CCCAGC	1 cut(s)	34
BsgI	GTGCAG	2 cut(s)	552, 1013
Bsh1285I	CGRYCG	1 cut(s)	699
BshFI	GGCC	3 cut(s)	452, 582, 771
BshVI	ATCGAT	1 cut(s)	180
BsiEI	CGRYCG	1 cut(s)	699
BsiHKAI	GWGCWC	3 cut(s)	96, 383, 943
BslI	CCNNNNNNNGG	2 cut(s)	234, 334
BsmAI	GTCTC	1 cut(s)	989
BsnI	GGCC	3 cut(s)	452, 582, 771
Bsp120I	GGGCCC	1 cut(s)	769
Bsp1286I	GDGCHC	4 cut(s)	96, 383, 773, 943
Bsp143I	GATC	4 cut(s)	46, 253, 505, 997
Bsp1720I	GCTNAGC	1 cut(s)	542
BspACI	CCGC	2 cut(s)	550, 974
BspANI	GGCC	3 cut(s)	452, 582, 771
BspCNI	CTCAG	3 cut(s)	22, 555, 976
BspDI	ATCGAT	1 cut(s)	180
BspHI	TCATGA	1 cut(s)	921
BspLI	GGNNCC	1 cut(s)	771
BspMAI	CTGCAG	1 cut(s)	645
BspPI	GGATC	2 cut(s)	41, 1005
BspTI	CTTAAG	1 cut(s)	341
BsrI	ACTGG	3 cut(s)	64, 199, 453
BssECI	CCNNGG	1 cut(s)	765
BssMI	GATC	4 cut(s)	46, 253, 505, 997
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	1 cut(s)	842
BstAFI	CTTAAG	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	4 cut(s)	30, 348, 542, 963
BstDSI	CCRYGG	1 cut(s)	765
BstF5I	GGATG	2 cut(s)	94, 239
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	4 cut(s)	49, 256, 508, 1000
BstMAI	GTCTC	1 cut(s)	989
BstMBI	GATC	4 cut(s)	46, 253, 505, 997
BstMCI	CGRYCG	1 cut(s)	699
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 547, 566
BstNI	CCWGG	1 cut(s)	579
BstSCI	CCNGG	1 cut(s)	577
BstSFI	CTRYAG	1 cut(s)	641
BstSLI	GKGCMC	1 cut(s)	773
BstV1I	GCAGC	5 cut(s)	103, 125, 229, 371, 374
BstX2I	RGATCY	2 cut(s)	46, 997
BstYI	RGATCY	2 cut(s)	46, 997
Bsu15I	ATCGAT	1 cut(s)	180
Bsu36I	CCTNAGG	1 cut(s)	348
BsuRI	GGCC	3 cut(s)	452, 582, 771
BsuTUI	ATCGAT	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	765
BtsCI	GGATG	2 cut(s)	94, 239
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	3 cut(s)	71, 372, 838
Cac8I	GCNNGC	1 cut(s)	548
CciI	TCATGA	1 cut(s)	921
CfoI	GCGC	1 cut(s)	531
Cfr13I	GGNCC	2 cut(s)	769, 770
ClaI	ATCGAT	1 cut(s)	180
CseI	GACGC	1 cut(s)	788
Csp6I	GTAC	2 cut(s)	73, 628
CviAII	CATG	5 cut(s)	76, 243, 688, 922, 1036
CviQI	GTAC	2 cut(s)	73, 628
DdeI	CTNAG	4 cut(s)	30, 348, 542, 963
DpnI	GATC	4 cut(s)	48, 255, 507, 999
DpnII	GATC	4 cut(s)	46, 253, 505, 997
DrdI	GACNNNNNNGTC	1 cut(s)	821
DseDI	GACNNNNNNGTC	1 cut(s)	821
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	2 cut(s)	96, 773
Eco53kI	GAGCTC	1 cut(s)	94
Eco81I	CCTNAGG	1 cut(s)	348
EcoICRI	GAGCTC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	577
EcoT38I	GRGCYC	2 cut(s)	96, 773
FaeI	CATG	5 cut(s)	79, 246, 691, 925, 1039
FatI	CATG	5 cut(s)	75, 242, 687, 921, 1035
Fnu4HI	GCNGC	5 cut(s)	114, 117, 218, 360, 363
FokI	GGATG	2 cut(s)	101, 246
FriOI	GRGCYC	2 cut(s)	96, 773
Fsp4HI	GCNGC	5 cut(s)	114, 117, 218, 360, 363
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	5 cut(s)	114, 117, 218, 360, 363
GsaI	CCCAGC	1 cut(s)	38
HaeIII	GGCC	3 cut(s)	452, 582, 771
HgaI	GACGC	1 cut(s)	788
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	5 cut(s)	79, 246, 691, 925, 1039
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HinfI	GANTC	5 cut(s)	268, 617, 692, 834, 1009
HphI	GGTGA	1 cut(s)	279
Hpy188I	TCNGA	4 cut(s)	31, 400, 880, 966
Hpy188III	TCNNGA	6 cut(s)	15, 503, 826, 922, 944, 1006
HpyAV	CCTTC	2 cut(s)	61, 405
HpyCH4III	ACNGT	1 cut(s)	842
HpyCH4V	TGCA	5 cut(s)	119, 246, 569, 643, 994
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 547, 566
HpyF3I	CTNAG	4 cut(s)	30, 348, 542, 963
Hsp92II	CATG	5 cut(s)	79, 246, 691, 925, 1039
HspAI	GCGC	1 cut(s)	529
Kzo9I	GATC	4 cut(s)	46, 253, 505, 997
LmnI	GCTCC	3 cut(s)	108, 897, 933
Lsp1109I	GCAGC	5 cut(s)	103, 125, 229, 371, 374
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	812, 949
MalI	GATC	4 cut(s)	48, 255, 507, 999
MboI	GATC	4 cut(s)	46, 253, 505, 997
MboII	GAAGA	4 cut(s)	46, 56, 601, 721
MfeI	CAATTG	1 cut(s)	120
MflI	RGATCY	2 cut(s)	46, 997
MhlI	GDGCHC	4 cut(s)	96, 383, 773, 943
MluCI	AATT	7 cut(s)	120, 130, 184, 310, 436, 896, 902
MseI	TTAA	3 cut(s)	342, 447, 899
MspA1I	CMGCKG	2 cut(s)	116, 550
MspCI	CTTAAG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	579
MunI	CAATTG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	3 cut(s)	100, 547, 566
NdeII	GATC	4 cut(s)	46, 253, 505, 997
NlaIII	CATG	5 cut(s)	79, 246, 691, 925, 1039
NlaIV	GGNNCC	1 cut(s)	771
NmuCI	GTSAC	1 cut(s)	812
PagI	TCATGA	1 cut(s)	921
PfeI	GAWTC	5 cut(s)	268, 617, 692, 834, 1009
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	5 cut(s)	115, 118, 219, 361, 364
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	577
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	1 cut(s)	771
PspOMI	GGGCCC	1 cut(s)	769
PspPI	GGNCC	2 cut(s)	769, 770
PstI	CTGCAG	1 cut(s)	645
PsuI	RGATCY	2 cut(s)	46, 997
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	74, 629
RsaNI	GTAC	2 cut(s)	73, 628
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	342, 447, 899
SatI	GCNGC	5 cut(s)	114, 117, 218, 360, 363
Sau3AI	GATC	4 cut(s)	46, 253, 505, 997
Sau96I	GGNCC	2 cut(s)	769, 770
ScrFI	CCNGG	1 cut(s)	579
SduI	GDGCHC	4 cut(s)	96, 383, 773, 943
SfcI	CTRYAG	1 cut(s)	641
SmlI	CTYRAG	4 cut(s)	341, 414, 501, 662
SmoI	CTYRAG	4 cut(s)	341, 414, 501, 662
Sse9I	AATT	7 cut(s)	120, 130, 184, 310, 436, 896, 902
SsiI	CCGC	2 cut(s)	550, 974
SspMI	CTAG	1 cut(s)	110
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	577
TaaI	ACNGT	1 cut(s)	842
TaqI	TCGA	2 cut(s)	180, 798
TaqII	GACCGA	1 cut(s)	685
TasI	AATT	7 cut(s)	120, 130, 184, 310, 436, 896, 902
TatI	WGTACW	2 cut(s)	72, 627
TfiI	GAWTC	5 cut(s)	268, 617, 692, 834, 1009
Tru1I	TTAA	3 cut(s)	342, 447, 899
Tru9I	TTAA	3 cut(s)	342, 447, 899
TscAI	CASTG	3 cut(s)	71, 372, 845
TseFI	GTSAC	1 cut(s)	812
TseI	GCWGC	5 cut(s)	113, 116, 217, 359, 362
Tsp45I	GTSAC	1 cut(s)	812
TspDTI	ATGAA	6 cut(s)	46, 92, 231, 411, 895, 1024
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	3 cut(s)	71, 372, 845
Van91I	CCANNNNNTGG	1 cut(s)	334
Vha464I	CTTAAG	1 cut(s)	341
XapI	RAATTY	1 cut(s)	902
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.