Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Reverse (-)

17796072 .. 17797901

Gene Structure 1830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGTATCTTATCCACAAGATGGTTTTCTGAGCAGGAAATAGAAGAAAATAGCATAATTCAACAGTTTCACATGAACTCAATAGTGGGAGAGGTCCAAGAAGCTCAATACATTTTTCCACACTCTTTCACGACCAACAATGATCCCTCTTATGATGATTTGATCGAAATGAAACCACCAAAGATCCTTGAGACAACTTACATATCACCTTCTTCTCATCTTCCTCCAAATTCAAAGCCCCATCATATTCACCGTCATTCTTCCTCAAGAATTCTCTCTTTCGAAGATTATGGTTCAAATGATATGGAACACGAGTACTCTCCCACCTACCTAAACTCAATCTTTAGCCCAAAATTAGAGGCTCAAGTGCAACCACACCAGAAGAGTGATGAGTTTAATCGAAAAGGGACCAAGAGGGCTCAACCGTTTTCAAGAAACCAATCCAATGCTCAGGATCACATAATAGCCGAAAGAAAACGTAGAGAGAAGCTTACTCAAAGATTCGTAGCTCTTTCCGCTCTAGTTCCTGGCCTTAAAAAGATGGACAAGGCTTCTGTGTTGGGAGATGCATTAAAGCATATAAAGTATCTCCAAGAAAGAGTGGGAGAGTTGGAGGAACAGAAGAAAGAAAGAAGATTGGAATCAATGGTTCTTGTGAAGAAGTCTAAGCTGATCTTGGACGATAATAATCAATCATTCTCTTCTTCTTGTGAAGATGGCTTCTCGGACTTGGATCTTCCCGAGATCGAGGTAAGATTCTCGGATGAAGATGTTCTAATCAAGATCCTTTGCGAGAAGCAAAAGGGTCATCTTGCCAAGATTATGGCCGAGATTGAGAAACTTCATATCTTGATAACTAATTCAAGTGTATTGAATTTTGGACCAACTCTTGATATCACCATTATAGCTAAGAAGGAGAGTGATTTCGACATGACACTCATGGATGTTGTAAAGAGCTTAAGGTCTGCTTTGTCGAATTTCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

328

Amino Acids

37.7

Weight (kDa)

6.03

Isoelectric Point (pI)

61.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	153 - 198	1.7e-10	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	248 - 307	9.1e-06	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	21
AccBSI	CCGCTC	1 cut(s)	518
AciI	CCGC	1 cut(s)	516
AclWI	GGATC	5 cut(s)	137, 178, 462, 741, 778
AcoI	YGGCCR	1 cut(s)	825
AcsI	RAATTY	4 cut(s)	229, 270, 874, 976
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	21
AflII	CTTAAG	1 cut(s)	958
AgsI	TTSAA	6 cut(s)	62, 234, 297, 432, 864, 874
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	6 cut(s)	104, 490, 509, 670, 908, 957
AluI	AGCT	6 cut(s)	104, 490, 509, 670, 908, 957
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	5 cut(s)	137, 178, 462, 741, 778
Ama87I	CYCGRG	1 cut(s)	740
AoxI	GGCC	2 cut(s)	529, 825
ApoI	RAATTY	4 cut(s)	229, 270, 874, 976
Asp700I	GAANNNNTTC	1 cut(s)	771
AspS9I	GGNCC	3 cut(s)	94, 408, 881
AsuHPI	GGTGA	3 cut(s)	198, 242, 889
AsuII	TTCGAA	1 cut(s)	282
AvaI	CYCGRG	1 cut(s)	740
AvaII	GGWCC	3 cut(s)	94, 408, 881
BanII	GRGCYC	1 cut(s)	421
BauI	CACGAG	1 cut(s)	311
BccI	CCATC	4 cut(s)	15, 249, 535, 710
BciT130I	CCWGG	1 cut(s)	528
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	1 cut(s)	521
BfrI	CTTAAG	1 cut(s)	958
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	3 cut(s)	94, 408, 881
BmeT110I	CYCGRG	1 cut(s)	740
BmgT120I	GGNCC	3 cut(s)	94, 408, 881
BmiI	GGNNCC	1 cut(s)	409
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	1 cut(s)	556
Bpu10I	CCTNAGC	1 cut(s)	450
Bpu14I	TTCGAA	1 cut(s)	282
BpuEI	CTTGAG	3 cut(s)	209, 250, 348
BsaBI	GATNNNNATC	2 cut(s)	640, 687
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse8I	GATNNNNATC	2 cut(s)	640, 687
BseBI	CCWGG	1 cut(s)	528
BseGI	GGATG	2 cut(s)	769, 949
BseJI	GATNNNNATC	2 cut(s)	640, 687
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseMII	CTCAG	2 cut(s)	21, 464
BshFI	GGCC	2 cut(s)	531, 827
BsiHKCI	CYCGRG	1 cut(s)	740
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	421
BsnI	GGCC	2 cut(s)	531, 827
BsoBI	CYCGRG	1 cut(s)	740
Bsp119I	TTCGAA	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	8 cut(s)	142, 162, 183, 454, 672, 733, 744, 783
BspACI	CCGC	1 cut(s)	516
BspANI	GGCC	2 cut(s)	531, 827
BspCNI	CTCAG	2 cut(s)	22, 463
BspLI	GGNNCC	1 cut(s)	409
BspPI	GGATC	5 cut(s)	137, 178, 462, 741, 778
BspT104I	TTCGAA	1 cut(s)	282
BspTI	CTTAAG	1 cut(s)	958
BsrBI	CCGCTC	1 cut(s)	518
BssMI	GATC	8 cut(s)	142, 162, 183, 454, 672, 733, 744, 783
BssSI	CACGAG	1 cut(s)	311
Bst2BI	CACGAG	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	3 cut(s)	66, 254, 426
Bst6I	CTCTTC	2 cut(s)	377, 706
BstAFI	CTTAAG	1 cut(s)	958
BstBI	TTCGAA	1 cut(s)	282
BstDEI	CTNAG	4 cut(s)	30, 450, 666, 909
BstF5I	GGATG	2 cut(s)	769, 949
BstKTI	GATC	8 cut(s)	145, 165, 186, 457, 675, 736, 747, 786
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	8 cut(s)	142, 162, 183, 454, 672, 733, 744, 783
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	526
BstX2I	RGATCY	3 cut(s)	183, 733, 783
BstXI	CCANNNNNNTGG	1 cut(s)	823
BstYI	RGATCY	3 cut(s)	183, 733, 783
BsuRI	GGCC	2 cut(s)	531, 827
BtsCI	GGATG	2 cut(s)	769, 949
Cfr13I	GGNCC	3 cut(s)	94, 408, 881
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	3 cut(s)	73, 931, 940
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	4 cut(s)	30, 450, 666, 909
DpnI	GATC	8 cut(s)	144, 164, 185, 456, 674, 735, 746, 785
DpnII	GATC	8 cut(s)	142, 162, 183, 454, 672, 733, 744, 783
EaeI	YGGCCR	1 cut(s)	825
Eam1104I	CTCTTC	2 cut(s)	377, 706
EarI	CTCTTC	2 cut(s)	377, 706
Eco24I	GRGCYC	1 cut(s)	421
Eco32I	GATATC	1 cut(s)	895
Eco47I	GGWCC	3 cut(s)	94, 408, 881
Eco88I	CYCGRG	1 cut(s)	740
EcoRI	GAATTC	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	526
EcoRV	GATATC	1 cut(s)	895
EcoT22I	ATGCAT	1 cut(s)	571
EcoT38I	GRGCYC	1 cut(s)	421
FaeI	CATG	3 cut(s)	76, 934, 943
FalI	AAGNNNNNCTT	4 cut(s)	659, 691, 952, 984
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	3 cut(s)	72, 930, 939
FauNDI	CATATG	1 cut(s)	983
FokI	GGATG	2 cut(s)	776, 956
FriOI	GRGCYC	1 cut(s)	421
FspBI	CTAG	1 cut(s)	521
HaeIII	GGCC	2 cut(s)	531, 827
Hin1II	CATG	3 cut(s)	76, 934, 943
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	3 cut(s)	501, 641, 756
HphI	GGTGA	3 cut(s)	198, 242, 889
Hpy188I	TCNGA	3 cut(s)	31, 727, 763
Hpy188III	TCNNGA	8 cut(s)	130, 267, 432, 452, 740, 781, 850, 890
HpyAV	CCTTC	2 cut(s)	219, 907
HpyCH4III	ACNGT	3 cut(s)	66, 254, 426
HpyCH4IV	ACGT	1 cut(s)	478
HpyCH4V	TGCA	2 cut(s)	370, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	4 cut(s)	30, 450, 666, 909
HpySE526I	ACGT	1 cut(s)	478
Hsp92II	CATG	3 cut(s)	76, 934, 943
Kzo9I	GATC	8 cut(s)	142, 162, 183, 454, 672, 733, 744, 783
LpnPI	CCDG	5 cut(s)	20, 392, 437, 513, 540
LweI	GCATC	1 cut(s)	556
MaeI	CTAG	1 cut(s)	521
MaeII	ACGT	1 cut(s)	478
MalI	GATC	8 cut(s)	144, 164, 185, 456, 674, 735, 746, 785
MbiI	CCGCTC	1 cut(s)	518
MboI	GATC	8 cut(s)	142, 162, 183, 454, 672, 733, 744, 783
MflI	RGATCY	3 cut(s)	183, 733, 783
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	7 cut(s)	57, 229, 270, 353, 859, 874, 976
MmeI	TCCRAC	1 cut(s)	591
MnlI	CCTC	8 cut(s)	85, 157, 234, 274, 352, 408, 607, 742
Mph1103I	ATGCAT	1 cut(s)	571
MroXI	GAANNNNTTC	1 cut(s)	771
MseI	TTAA	4 cut(s)	396, 534, 572, 959
MspCI	CTTAAG	1 cut(s)	958
MspR9I	CCNGG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	515
NdeI	CATATG	1 cut(s)	983
NdeII	GATC	8 cut(s)	142, 162, 183, 454, 672, 733, 744, 783
NlaIII	CATG	3 cut(s)	76, 934, 943
NlaIV	GGNNCC	1 cut(s)	409
NmeAIII	GCCGAG	1 cut(s)	853
NsiI	ATGCAT	1 cut(s)	571
NspV	TTCGAA	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	771
PfeI	GAWTC	3 cut(s)	501, 641, 756
PflMI	CCANNNNNTGG	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	1 cut(s)	409
PspPI	GGNCC	3 cut(s)	94, 408, 881
PsuI	RGATCY	3 cut(s)	183, 733, 783
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SaqAI	TTAA	4 cut(s)	396, 534, 572, 959
Sau3AI	GATC	8 cut(s)	142, 162, 183, 454, 672, 733, 744, 783
Sau96I	GGNCC	3 cut(s)	94, 408, 881
ScaI	AGTACT	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	1 cut(s)	421
SfaNI	GCATC	1 cut(s)	556
SfuI	TTCGAA	1 cut(s)	282
SinI	GGWCC	3 cut(s)	94, 408, 881
SmlI	CTYRAG	4 cut(s)	188, 265, 363, 958
SmoI	CTYRAG	4 cut(s)	188, 265, 363, 958
Sse9I	AATT	7 cut(s)	57, 229, 270, 353, 859, 874, 976
SsiI	CCGC	1 cut(s)	516
SspMI	CTAG	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	526
TaaI	ACNGT	3 cut(s)	66, 254, 426
TaiI	ACGT	1 cut(s)	481
TaqI	TCGA	6 cut(s)	165, 282, 400, 747, 927, 974
TasI	AATT	7 cut(s)	57, 229, 270, 353, 859, 874, 976
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	3 cut(s)	501, 641, 756
Tru1I	TTAA	4 cut(s)	396, 534, 572, 959
Tru9I	TTAA	4 cut(s)	396, 534, 572, 959
TspDTI	ATGAA	5 cut(s)	89, 185, 780, 833, 970
Van91I	CCANNNNNTGG	1 cut(s)	21
Vha464I	CTTAAG	1 cut(s)	958
VpaK11BI	GGWCC	3 cut(s)	94, 408, 881
XapI	RAATTY	4 cut(s)	229, 270, 874, 976
XmnI	GAANNNNTTC	1 cut(s)	771
XspI	CTAG	1 cut(s)	521
ZrmI	AGTACT	1 cut(s)	317
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.