Rorug06G0411400

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000792
Physical Location & Seq
Forward (+)
55348123 .. 55349928
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0411400.1

Sequence Viewer

Length: 1131 bp
ATGAGGAAGTTGTGCCCTAACCTTGACAATGAAGATGGCCTTGAAACCGTTCTTGAGGTGCCGATACCAGAAGAAATGTTCACCCTTATGGGCAGCAGTGCTATATTGCGTTGGCATAATTTGCGAACATTCATGAAAAATCAATCCCATGGGAAATACTCCACTTCTCATCTCCCGTCAGGATCAAATAGTGAGTTTATGGCATTGCTTAAGCTTGTGGGTTCTCCTCTAATCCCTCTTCAGGTTCACTGCGACTGTGCCCTCACTCGCCCGATCAAAGATTGTTCCATCGAGGCTTCTACTGCGAAATACATTGTACAACAATATGTAGCAGCTATCGGGGGACTAGCGGCATTGAATGCCGTGAATAGTATGTGTGCAGTAGGGCAGGTGAAGATGGTGGGATCTGAAATGCACAAAGCCGATGATAACAGTGTTCAAACAACGACGAAAGTCAACAGTGAAGTTGGTGGATTTGTTCTTTGGCAAAAGAATCCTGACTTGTGGTACTTAGAGCTGGTTGTTTCCGGCTACAAGGTAAGCGCCGGAAGCGATGGCGCTGTTGCATGGAATCAGTCCGGCTCTCAACCTTCTCATGCCAATAAAGGCCCCCCAAGACCCCTCCGTCGCTTCTTTCAGGGATTGGATCCGAGGAGCACAGCCAACTTGTTTTTGGACGCAGTATGCACCGGAGAGAAAACCATCAACAAAGAAGAATGTTTCATACTGAAGCTTGAAACGCCAGCAGATATTCTTCAATCACAAAGCACATCCCAAACTGAAATAGTCCACCACACGATATGGGGGTACTTCAGCCAAAGAACAGGGCTTCTTGTCCAGTTTGAGGACACAAAATTGGTGAAAATGAAGGCCGCTAGAGGAGACGACCACGTTTTTTGGGAAACAACGATGGAGACGTTGGTAGGGGATTATAGATACGTCGATGGCATTAACGTAGCACATGGTGGTAAGACATCTGCATTGTTATTTAGGTATGGACATGCTTATAATCAAAAGCGAAGGATTGAGGAGACGTGGGAGATTGATGAGGTTGACTTCAATATTTGTGGGTTGTCCATGGAGTGTTTTCTGCCTCCTTCCGACCTCAAGAGGGATGATGGAGAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

376

Amino Acids

41.83

Weight (kDa)

5.69

Isoelectric Point (pI)

48.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF620 PF04788 125 - 366 6.3e-116 Protein of unknown function (DUF620)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1008
AarI CACCTGC 1 cut(s) 379
AasI GACNNNNNNGTC 1 cut(s) 624
Acc36I ACCTGC 1 cut(s) 379
AccB1I GGYRCC 1 cut(s) 58
AciI CCGC 2 cut(s) 350, 873
AclWI GGATC 4 cut(s) 190, 412, 641, 654
AcuI CTGAAG 3 cut(s) 224, 749, 796
AdeI CACNNNGTG 1 cut(s) 965
AfaI GTAC 3 cut(s) 318, 509, 809
AfiI CCNNNNNNNGG 3 cut(s) 241, 844, 1111
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 6 cut(s) 44, 358, 440, 737, 758, 1060
AjiI CACGTC 1 cut(s) 1035
AluBI AGCT 4 cut(s) 214, 335, 517, 733
AluI AGCT 4 cut(s) 214, 335, 517, 733
Alw21I GWGCWC 1 cut(s) 659
Alw26I GTCTC 3 cut(s) 876, 908, 1025
AlwI GGATC 4 cut(s) 190, 412, 641, 654
AoxI GGCC 3 cut(s) 37, 607, 870
ApeKI GCWGC 2 cut(s) 93, 332
Asp700I GAANNNNTTC 1 cut(s) 48
AspLEI GCGC 2 cut(s) 545, 560
AspS9I GGNCC 1 cut(s) 608
AsuHPI GGTGA 3 cut(s) 73, 403, 871
BaeGI GKGCMC 2 cut(s) 17, 262
BamHI GGATCC 1 cut(s) 646
BanI GGYRCC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 659
BbvI GCAGC 2 cut(s) 105, 344
BccI CCATC 8 cut(s) 29, 296, 391, 548, 710, 904, 938, 1112
BceAI ACGGC 1 cut(s) 347
BcoDI GTCTC 3 cut(s) 876, 908, 1025
BfaI CTAG 2 cut(s) 347, 876
BfoI RGCGCY 2 cut(s) 546, 561
BfrI CTTAAG 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 379
BisI GCNGC 4 cut(s) 94, 333, 351, 873
BlsI GCNGC 4 cut(s) 95, 334, 352, 874
BmgBI CACGTC 1 cut(s) 1035
BmgT120I GGNCC 1 cut(s) 608
BmiI GGNNCC 3 cut(s) 60, 610, 648
BoxI GACNNNNGTC 1 cut(s) 452
BpuEI CTTGAG 2 cut(s) 74, 1091
BsaJI CCNNGG 3 cut(s) 148, 650, 1077
BsaWI WCCGGW 1 cut(s) 689
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 844, 1111
Bse1I ACTGG 1 cut(s) 838
Bse3DI GCAATG 1 cut(s) 203
BseDI CCNNGG 3 cut(s) 148, 650, 1077
BseGI GGATG 2 cut(s) 770, 1120
BseLI CCNNNNNNNGG 3 cut(s) 241, 844, 1111
BseMI GCAATG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 838
BseRI GAGGAG 4 cut(s) 216, 667, 894, 1043
BseSI GKGCMC 2 cut(s) 17, 262
BseXI GCAGC 2 cut(s) 105, 344
BsgI GTGCAG 1 cut(s) 399
BshFI GGCC 3 cut(s) 39, 609, 872
BshNI GGYRCC 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 659
BsiSI CCGG 4 cut(s) 528, 546, 579, 690
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 3 cut(s) 241, 844, 1111
BsmAI GTCTC 3 cut(s) 876, 908, 1025
BsmBI CGTCTC 3 cut(s) 876, 908, 1025
BsmFI GGGAC 1 cut(s) 357
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 3 cut(s) 39, 609, 872
Bsp1286I GDGCHC 3 cut(s) 17, 262, 659
Bsp1407I TGTACA 1 cut(s) 316
Bsp143I GATC 4 cut(s) 182, 273, 404, 646
Bsp19I CCATGG 2 cut(s) 148, 1077
BspACI CCGC 2 cut(s) 350, 873
BspANI GGCC 3 cut(s) 39, 609, 872
BspHI TCATGA 1 cut(s) 132
BspLI GGNNCC 3 cut(s) 60, 610, 648
BspMI ACCTGC 1 cut(s) 379
BspPI GGATC 4 cut(s) 190, 412, 641, 654
BspT107I GGYRCC 1 cut(s) 58
BspTI CTTAAG 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 203
BsrGI TGTACA 1 cut(s) 316
BsrI ACTGG 1 cut(s) 838
BssECI CCNNGG 3 cut(s) 148, 650, 1077
BssMI GATC 4 cut(s) 182, 273, 404, 646
BssT1I CCWWGG 2 cut(s) 148, 1077
Bst4CI ACNGT 4 cut(s) 49, 257, 434, 461
Bst6I CTCTTC 1 cut(s) 243
BstAFI CTTAAG 1 cut(s) 209
BstAPI GCANNNNNTGC 2 cut(s) 121, 359
BstAUI TGTACA 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 744
BstDEI CTNAG 1 cut(s) 511
BstDSI CCRYGG 2 cut(s) 148, 1077
BstF5I GGATG 2 cut(s) 770, 1120
BstH2I RGCGCY 2 cut(s) 546, 561
BstHHI GCGC 2 cut(s) 545, 560
BstKTI GATC 4 cut(s) 185, 276, 407, 649
BstMAI GTCTC 3 cut(s) 876, 908, 1025
BstMBI GATC 4 cut(s) 182, 273, 404, 646
BstMWI GCNNNNNNNGC 5 cut(s) 121, 302, 359, 549, 739
BstNSI RCATGY 1 cut(s) 1004
BstPAI GACNNNNGTC 1 cut(s) 452
BstSLI GKGCMC 2 cut(s) 17, 262
BstV1I GCAGC 2 cut(s) 105, 344
BstX2I RGATCY 2 cut(s) 404, 646
BstYI RGATCY 2 cut(s) 404, 646
BsuRI GGCC 3 cut(s) 39, 609, 872
BtgI CCRYGG 2 cut(s) 148, 1077
BtgZI GCGATG 1 cut(s) 567
BtrI CACGTC 1 cut(s) 1035
BtsCI GGATG 2 cut(s) 770, 1120
BtsI GCAGTG 2 cut(s) 103, 247
BtsIMutI CAGTG 4 cut(s) 103, 247, 439, 466
BveI ACCTGC 1 cut(s) 379
Cac8I GCNNGC 1 cut(s) 744
CciI TCATGA 1 cut(s) 132
CfoI GCGC 2 cut(s) 545, 560
Cfr13I GGNCC 1 cut(s) 608
CseI GACGC 1 cut(s) 686
Csp6I GTAC 3 cut(s) 317, 508, 808
CspCI CAANNNNNGTGG 4 cut(s) 878, 913, 1048, 1083
CviAII CATG 7 cut(s) 133, 149, 567, 596, 962, 1001, 1078
CviQI GTAC 3 cut(s) 317, 508, 808
DdeI CTNAG 1 cut(s) 511
DpnI GATC 4 cut(s) 184, 275, 406, 648
DpnII GATC 4 cut(s) 182, 273, 404, 646
DraIII CACNNNGTG 1 cut(s) 965
DrdI GACNNNNNNGTC 1 cut(s) 624
DseDI GACNNNNNNGTC 1 cut(s) 624
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco130I CCWWGG 2 cut(s) 148, 1077
Eco57I CTGAAG 3 cut(s) 224, 749, 796
EcoO109I RGGNCCY 1 cut(s) 608
EcoT14I CCWWGG 2 cut(s) 148, 1077
ErhI CCWWGG 2 cut(s) 148, 1077
Esp3I CGTCTC 3 cut(s) 876, 908, 1025
FaeI CATG 7 cut(s) 136, 152, 570, 599, 965, 1004, 1081
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FaqI GGGAC 1 cut(s) 357
FatI CATG 7 cut(s) 132, 148, 566, 595, 961, 1000, 1077
Fnu4HI GCNGC 4 cut(s) 94, 333, 351, 873
FokI GGATG 2 cut(s) 757, 1127
Fsp4HI GCNGC 4 cut(s) 94, 333, 351, 873
FspBI CTAG 2 cut(s) 347, 876
GlaI GCGC 2 cut(s) 544, 559
GluI GCNGC 4 cut(s) 94, 333, 351, 873
HaeII RGCGCY 2 cut(s) 546, 561
HaeIII GGCC 3 cut(s) 39, 609, 872
HapII CCGG 4 cut(s) 528, 546, 579, 690
HgaI GACGC 1 cut(s) 686
HhaI GCGC 2 cut(s) 545, 560
Hin1II CATG 7 cut(s) 136, 152, 570, 599, 965, 1004, 1081
Hin6I GCGC 2 cut(s) 543, 558
HinP1I GCGC 2 cut(s) 543, 558
HincII GTYRAC 2 cut(s) 457, 1054
HindII GTYRAC 2 cut(s) 457, 1054
HindIII AAGCTT 2 cut(s) 212, 731
HinfI GANTC 2 cut(s) 493, 571
HpaII CCGG 4 cut(s) 528, 546, 579, 690
HphI GGTGA 3 cut(s) 73, 403, 871
Hpy166II GTNNAC 5 cut(s) 81, 247, 457, 790, 1054
Hpy188I TCNGA 3 cut(s) 409, 651, 1102
Hpy188III TCNNGA 5 cut(s) 53, 133, 180, 497, 1108
Hpy8I GTNNAC 5 cut(s) 81, 247, 457, 790, 1054
Hpy99I CGWCG 3 cut(s) 451, 630, 944
HpyAV CCTTC 4 cut(s) 600, 862, 1014, 1107
HpyCH4III ACNGT 4 cut(s) 49, 257, 434, 461
HpyCH4IV ACGT 5 cut(s) 891, 917, 939, 954, 1034
HpyCH4V TGCA 5 cut(s) 380, 415, 566, 687, 980
HpyF10VI GCNNNNNNNGC 5 cut(s) 121, 302, 359, 549, 739
HpyF3I CTNAG 1 cut(s) 511
HpySE526I ACGT 5 cut(s) 891, 917, 939, 954, 1034
Hsp92II CATG 7 cut(s) 136, 152, 570, 599, 965, 1004, 1081
HspAI GCGC 2 cut(s) 543, 558
Kzo9I GATC 4 cut(s) 182, 273, 404, 646
LmnI GCTCC 1 cut(s) 654
Lsp1109I GCAGC 2 cut(s) 105, 344
MaeI CTAG 2 cut(s) 347, 876
MaeII ACGT 5 cut(s) 891, 917, 939, 954, 1034
MalI GATC 4 cut(s) 184, 275, 406, 648
MboI GATC 4 cut(s) 182, 273, 404, 646
MboII GAAGA 6 cut(s) 44, 83, 230, 406, 725, 746
MflI RGATCY 2 cut(s) 404, 646
MhlI GDGCHC 3 cut(s) 17, 262, 659
MluCI AATT 2 cut(s) 118, 854
MmeI TCCRAC 1 cut(s) 1125
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 2 cut(s) 210, 951
MslI CAYNNNNRTG 1 cut(s) 86
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 4 cut(s) 528, 546, 579, 690
Mva1269I GAATGC 1 cut(s) 364
MwoI GCNNNNNNNGC 5 cut(s) 121, 302, 359, 549, 739
NcoI CCATGG 2 cut(s) 148, 1077
NdeII GATC 4 cut(s) 182, 273, 404, 646
NlaIII CATG 7 cut(s) 136, 152, 570, 599, 965, 1004, 1081
NlaIV GGNNCC 3 cut(s) 60, 610, 648
NspI RCATGY 1 cut(s) 1004
PagI TCATGA 1 cut(s) 132
PaqCI CACCTGC 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 914
PctI GAATGC 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 2 cut(s) 493, 571
PkrI GCNGC 4 cut(s) 95, 334, 352, 874
PshAI GACNNNNGTC 1 cut(s) 452
PsiI TTATAA 1 cut(s) 1008
PspN4I GGNNCC 3 cut(s) 60, 610, 648
PspPI GGNCC 1 cut(s) 608
PsuI RGATCY 2 cut(s) 404, 646
RsaI GTAC 3 cut(s) 318, 509, 809
RsaNI GTAC 3 cut(s) 317, 508, 808
RseI CAYNNNNRTG 1 cut(s) 86
SaqAI TTAA 2 cut(s) 210, 951
SatI GCNGC 4 cut(s) 94, 333, 351, 873
Sau3AI GATC 4 cut(s) 182, 273, 404, 646
Sau96I GGNCC 1 cut(s) 608
SduI GDGCHC 3 cut(s) 17, 262, 659
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 3 cut(s) 53, 209, 1106
SmoI CTYRAG 3 cut(s) 53, 209, 1106
Sse9I AATT 2 cut(s) 118, 854
SsiI CCGC 2 cut(s) 350, 873
SspI AATATT 1 cut(s) 1063
SspMI CTAG 2 cut(s) 347, 876
StyI CCWWGG 2 cut(s) 148, 1077
TaaI ACNGT 4 cut(s) 49, 257, 434, 461
TaiI ACGT 5 cut(s) 894, 920, 942, 957, 1037
TaqI TCGA 2 cut(s) 291, 942
TasI AATT 2 cut(s) 118, 854
TatI WGTACW 1 cut(s) 316
TauI GCSGC 2 cut(s) 353, 875
TfiI GAWTC 2 cut(s) 493, 571
Tru1I TTAA 2 cut(s) 210, 951
Tru9I TTAA 2 cut(s) 210, 951
TscAI CASTG 4 cut(s) 103, 254, 439, 466
TseI GCWGC 2 cut(s) 93, 332
TspDTI ATGAA 5 cut(s) 45, 121, 149, 712, 881
TspGWI ACGGA 1 cut(s) 614
TspRI CASTG 4 cut(s) 103, 254, 439, 466
Vha464I CTTAAG 1 cut(s) 209
XceI RCATGY 1 cut(s) 1004
XcmI CCANNNNNNNNNTGG 1 cut(s) 670
XmnI GAANNNNTTC 1 cut(s) 48
XspI CTAG 2 cut(s) 347, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.