Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000792

Physical Location & Seq

Genomic Coordinates Forward (+)

22022741 .. 22025403

Gene Structure 2663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G211900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGACATATCATCAGCCAAATGGTTCTCTGAATTGGGAATCGATGATTACAATTTCATTCCTCAATGCGACTTGAACACTCTTGATGAAGGGTTTACTGCACAGGACATTGCCACTGCACTTGGGGAGAATTTCAAGCAATCTTTATCTTCTGAAAGTTATTCATCTTACCCAACCTTGACTACCCAAAACACCAAAACCACGACCACCACATTAAGTGGTGGTTCATCCATTAATAAGACTTCTCAGACCAGCTTTGAGAGGCCAGCTAAACAGCTCAAGACTAGTAACTGGAACTCTGGCATCACAGAACATGTTTCACCAAAACCCTCCTCTTCTTCCTCCCAGATTCTTTCGTTTGAGAGCTCGAGTTCACCGTCTTCCAAGCCTCAGCACTTCTGTAATAATTTTGACTCTACCTTGAAGCCGAAGGATGAGGCTCCATCACAAATAAATATGCAGTTTTCACCTTTAATTTCCAAGTCTTCCATTAAAGACTGCAGCCAGGGGACTAAGAGGCCATACTCAATAACTAGAACACCTTCACACGCTCAAGAGCACATAATGGCTGAGAGAAAGCGGAGAGAAAAGCTCAGCGAGAGATTCATAGCTCTTTCTGCCATTGTTCCTGGCCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGATGCTATCAAACATGTGAAACAGCTTCAAGAGAGGGTGAAAGTGCTTGAGGAACAAACCAAGAAGAGAACCGTGGAATCCGTGGTGTTCGTGAAGAAGTCTCAACTCTCTGCTGATGATGGCACCTCTTCCTGCGGTGAAAGCTTTGATGCCCACTCTGACGAAGCTTCACTCCCAGAAATTGAAGCAAAAGTTTCAGAAACGGATGTTTTGATTCGAATTCACTGTGAGAAACAGAAAGGCTTTGTGGTGAAAATACTAAGCGAAGTTGAGAAGCTTCAACTATCGGTGGTTAATAGCAGTGTCTTGCCATTTGGGAATTCCGCTCTAGATATCACAATTATTGCTCAGATGGAGGATGAATTCAATATGTCAGTGAAGGATCTAGCAAGAAACTTGCGAGGGGCTCTGCTGAAGTTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

364

Amino Acids

40.08

Weight (kDa)

6.68

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22750 AT2G22760 AT2G22760 AT4G37850 AT4G37850
fragaria_vesca	FvH4_1g18740 FvH4_1g18750 FvH4_2g02340 FvH4_2g02340
malus_domestica	MD00G1068800.v1.1 MD01G1047200.v1.1 MD01G1047400.v1.1 MD05G1113000.v1.1 MD10G1115500.v1.1 MD15G1305200.v1.1 MD16G1282500.v1.1
prunus_persica	Prupe.6G211900_v2.0.a1 Prupe.6G212000_v2.0.a1 Prupe.8G157500_v2.0.a1 Prupe.8G157500_v2.0.a1
pyrus_communis	pycom01g07300 pycom01g07310 pycom05g10820 pycom10g10000 pycom15g26810 pycom16g25240 pycom16g25260 pycom16g25270
rosa_chinensis	RchiOBHm_Chr2g0109611 RchiOBHm_Chr2g0109621 RchiOBHm_Chr6g0246251
rosa_laevigata	RLG00000005489 RLG00000015268 RLG00000017749 RLG00000017750
rosa_multiflora	Rmu_sc0000332.1_g000054 Rmu_sc0000332.1_g000057 Rmu_sc0000987.1_g000014 Rmu_sc0001066.1_g000012 Rmu_sc0009451.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134090 Rroxscaffold_2G00134100 Rroxscaffold_7G00214730
rosa_rugosa	Rorug02G0161200 Rorug02G0161300 Rorug02G0161300 Rorug05G0519900 Rorug06G0411300 Rorug06G0411400 Rorug06G0411500.1
rosa_samantha	Rh2AG213400 Rh2AG213500 Rh2BG223700 Rh2BG223900 Rh2CG215600 Rh2CG215700 Rh2DG218900 Rh2DG219000 Rh6AG034000 Rh6BG029200 Rh6CG029600 Rh6DG028600 Rh7BG010500
rosa_wichuraiana	Rw6G002750 Rw6G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	788
AccBSI	CCGCTC	1 cut(s)	992
AciI	CCGC	3 cut(s)	580, 801, 990
AclWI	GGATC	1 cut(s)	1056
AcsI	RAATTY	4 cut(s)	130, 885, 985, 1028
AflIII	ACRYGT	2 cut(s)	313, 679
AgsI	TTSAA	7 cut(s)	76, 136, 424, 695, 851, 947, 1033
AhlI	ACTAGT	1 cut(s)	284
AjnI	CCWGG	2 cut(s)	504, 628
Alw21I	GWGCWC	2 cut(s)	368, 561
Alw26I	GTCTC	1 cut(s)	771
AlwI	GGATC	1 cut(s)	1056
Ama87I	CYCGRG	1 cut(s)	367
AoxI	GGCC	3 cut(s)	263, 518, 631
ApeKI	GCWGC	1 cut(s)	501
ApoI	RAATTY	4 cut(s)	130, 885, 985, 1028
AseI	ATTAAT	1 cut(s)	234
Asp700I	GAANNNNTTC	1 cut(s)	541
AsuHPI	GGTGA	6 cut(s)	312, 366, 459, 715, 815, 928
AsuII	TTCGAA	1 cut(s)	883
AvaI	CYCGRG	1 cut(s)	367
BanI	GGYRCC	1 cut(s)	788
BanII	GRGCYC	2 cut(s)	368, 1075
BbsI	GAAGAC	2 cut(s)	372, 477
Bbv12I	GWGCWC	2 cut(s)	368, 561
BbvCI	CCTCAGC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	513
BccI	CCATC	4 cut(s)	451, 637, 779, 1012
BciT130I	CCWGG	2 cut(s)	506, 630
BcoDI	GTCTC	1 cut(s)	771
BcuI	ACTAGT	1 cut(s)	284
BfaI	CTAG	4 cut(s)	285, 534, 995, 1052
BfmI	CTRYAG	1 cut(s)	499
BisI	GCNGC	1 cut(s)	502
BlpI	GCTNAGC	1 cut(s)	593
BlsI	GCNGC	1 cut(s)	503
Bme1390I	CCNGG	2 cut(s)	506, 630
BmeT110I	CYCGRG	1 cut(s)	367
BmiI	GGNNCC	2 cut(s)	441, 790
BmrFI	CCNGG	2 cut(s)	506, 630
BmsI	GCATC	3 cut(s)	312, 658, 805
BpiI	GAAGAC	2 cut(s)	372, 477
BplI	GAGNNNNNCTC	2 cut(s)	576, 608
Bpu10I	CCTNAGC	1 cut(s)	390
Bpu1102I	GCTNAGC	1 cut(s)	593
Bpu14I	TTCGAA	1 cut(s)	883
BpuEI	CTTGAG	3 cut(s)	263, 537, 734
Bsa29I	ATCGAT	1 cut(s)	42
BsaJI	CCNNGG	3 cut(s)	505, 738, 747
Bse1I	ACTGG	1 cut(s)	296
Bse3DI	GCAATG	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	506, 630
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	3 cut(s)	505, 738, 747
BseGI	GGATG	4 cut(s)	227, 439, 877, 1030
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	5 cut(s)	260, 404, 561, 607, 1028
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	322
BseXI	GCAGC	1 cut(s)	513
BsgI	GTGCAG	2 cut(s)	84, 102
BshFI	GGCC	3 cut(s)	265, 520, 633
BshNI	GGYRCC	1 cut(s)	788
BshVI	ATCGAT	1 cut(s)	42
BsiHKAI	GWGCWC	2 cut(s)	368, 561
BsiHKCI	CYCGRG	1 cut(s)	367
BslFI	GGGAC	1 cut(s)	523
BsmAI	GTCTC	1 cut(s)	771
BsmFI	GGGAC	1 cut(s)	523
BsnI	GGCC	3 cut(s)	265, 520, 633
BsoBI	CYCGRG	1 cut(s)	367
Bsp119I	TTCGAA	1 cut(s)	883
Bsp1286I	GDGCHC	3 cut(s)	368, 561, 1075
Bsp143I	GATC	1 cut(s)	1048
Bsp1720I	GCTNAGC	1 cut(s)	593
BspACI	CCGC	3 cut(s)	580, 801, 990
BspANI	GGCC	3 cut(s)	265, 520, 633
BspCNI	CTCAG	5 cut(s)	259, 403, 562, 606, 1027
BspDI	ATCGAT	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	441, 790
BspMAI	CTGCAG	1 cut(s)	503
BspPI	GGATC	1 cut(s)	1056
BspT104I	TTCGAA	1 cut(s)	883
BspT107I	GGYRCC	1 cut(s)	788
BsrBI	CCGCTC	1 cut(s)	992
BsrDI	GCAATG	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	3 cut(s)	505, 738, 747
BssMI	GATC	1 cut(s)	1048
Bst2UI	CCWGG	2 cut(s)	506, 630
Bst4CI	ACNGT	3 cut(s)	378, 739, 893
Bst6I	CTCTTC	3 cut(s)	340, 725, 799
BstBI	TTCGAA	1 cut(s)	883
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	7 cut(s)	246, 390, 513, 570, 593, 926, 1014
BstDSI	CCRYGG	2 cut(s)	738, 747
BstF5I	GGATG	4 cut(s)	227, 439, 877, 1030
BstKTI	GATC	1 cut(s)	1051
BstMAI	GTCTC	1 cut(s)	771
BstMBI	GATC	1 cut(s)	1048
BstMWI	GCNNNNNNNGC	2 cut(s)	617, 807
BstNI	CCWGG	2 cut(s)	506, 630
BstNSI	RCATGY	2 cut(s)	317, 683
BstSCI	CCNGG	2 cut(s)	504, 628
BstSFI	CTRYAG	1 cut(s)	499
BstV1I	GCAGC	1 cut(s)	513
BstV2I	GAAGAC	2 cut(s)	372, 477
BstX2I	RGATCY	1 cut(s)	1048
BstYI	RGATCY	1 cut(s)	1048
Bsu15I	ATCGAT	1 cut(s)	42
BsuRI	GGCC	3 cut(s)	265, 520, 633
BsuTUI	ATCGAT	1 cut(s)	42
BtgI	CCRYGG	2 cut(s)	738, 747
BtsCI	GGATG	4 cut(s)	227, 439, 877, 1030
BtsI	GCAGTG	2 cut(s)	114, 973
BtsIMutI	CAGTG	4 cut(s)	114, 889, 973, 1047
Cac8I	GCNNGC	1 cut(s)	267
ClaI	ATCGAT	1 cut(s)	42
CspCI	CAANNNNNGTGG	2 cut(s)	103, 138
CviAII	CATG	3 cut(s)	314, 680, 1087
DdeI	CTNAG	7 cut(s)	246, 390, 513, 570, 593, 926, 1014
DpnI	GATC	1 cut(s)	1050
DpnII	GATC	1 cut(s)	1048
Eam1104I	CTCTTC	3 cut(s)	340, 725, 799
EarI	CTCTTC	3 cut(s)	340, 725, 799
Ecl136II	GAGCTC	1 cut(s)	366
Eco24I	GRGCYC	2 cut(s)	368, 1075
Eco32I	GATATC	1 cut(s)	1000
Eco53kI	GAGCTC	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	367
EcoICRI	GAGCTC	1 cut(s)	366
EcoRI	GAATTC	3 cut(s)	885, 985, 1028
EcoRII	CCWGG	2 cut(s)	504, 628
EcoRV	GATATC	1 cut(s)	1000
EcoT38I	GRGCYC	2 cut(s)	368, 1075
FaeI	CATG	3 cut(s)	317, 683, 1090
FaiI	YATR	9 cut(s)	8, 315, 458, 523, 563, 608, 681, 1037, 1088
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	3 cut(s)	313, 679, 1086
Fnu4HI	GCNGC	1 cut(s)	502
FokI	GGATG	4 cut(s)	214, 446, 884, 1037
FriOI	GRGCYC	2 cut(s)	368, 1075
Fsp4HI	GCNGC	1 cut(s)	502
FspBI	CTAG	4 cut(s)	285, 534, 995, 1052
GluI	GCNGC	1 cut(s)	502
HaeIII	GGCC	3 cut(s)	265, 520, 633
Hin1II	CATG	3 cut(s)	317, 683, 1090
HindIII	AAGCTT	4 cut(s)	651, 808, 831, 941
HinfI	GANTC	6 cut(s)	39, 349, 413, 603, 743, 880
HphI	GGTGA	6 cut(s)	312, 366, 459, 715, 815, 928
Hpy166II	GTNNAC	2 cut(s)	96, 374
Hpy188I	TCNGA	6 cut(s)	31, 154, 249, 826, 865, 1017
Hpy188III	TCNNGA	6 cut(s)	83, 280, 554, 695, 757, 995
Hpy8I	GTNNAC	2 cut(s)	96, 374
HpyAV	CCTTC	4 cut(s)	83, 424, 552, 1039
HpyCH4III	ACNGT	3 cut(s)	378, 739, 893
HpyCH4V	TGCA	4 cut(s)	101, 119, 460, 501
HpyF10VI	GCNNNNNNNGC	2 cut(s)	617, 807
HpyF3I	CTNAG	7 cut(s)	246, 390, 513, 570, 593, 926, 1014
Hsp92II	CATG	3 cut(s)	317, 683, 1090
Kzo9I	GATC	1 cut(s)	1048
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	1 cut(s)	513
LweI	GCATC	3 cut(s)	312, 658, 805
MaeI	CTAG	4 cut(s)	285, 534, 995, 1052
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	1 cut(s)	1050
MbiI	CCGCTC	1 cut(s)	992
MboI	GATC	1 cut(s)	1048
MboII	GAAGA	9 cut(s)	141, 327, 330, 372, 477, 652, 742, 772, 786
MflI	RGATCY	1 cut(s)	1048
MhlI	GDGCHC	3 cut(s)	368, 561, 1075
MlyI	GAGTC	1 cut(s)	407
MroXI	GAANNNNTTC	1 cut(s)	541
MseI	TTAA	5 cut(s)	215, 234, 473, 492, 960
MspR9I	CCNGG	2 cut(s)	506, 630
MvaI	CCWGG	2 cut(s)	506, 630
MwoI	GCNNNNNNNGC	2 cut(s)	617, 807
NdeII	GATC	1 cut(s)	1048
NlaIII	CATG	3 cut(s)	317, 683, 1090
NlaIV	GGNNCC	2 cut(s)	441, 790
NspI	RCATGY	2 cut(s)	317, 683
NspV	TTCGAA	1 cut(s)	883
PaeR7I	CTCGAG	1 cut(s)	367
PciI	ACATGT	2 cut(s)	313, 679
PcsI	WCGNNNNNNNCGW	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	541
PfeI	GAWTC	5 cut(s)	39, 349, 603, 743, 880
PkrI	GCNGC	1 cut(s)	503
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
PscI	ACATGT	2 cut(s)	313, 679
PshBI	ATTAAT	1 cut(s)	234
Psp124BI	GAGCTC	1 cut(s)	368
Psp6I	CCWGG	2 cut(s)	504, 628
PspGI	CCWGG	2 cut(s)	504, 628
PspN4I	GGNNCC	2 cut(s)	441, 790
PspXI	VCTCGAGB	1 cut(s)	367
PstI	CTGCAG	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	1048
SacI	GAGCTC	1 cut(s)	368
SaqAI	TTAA	5 cut(s)	215, 234, 473, 492, 960
SatI	GCNGC	1 cut(s)	502
Sau3AI	GATC	1 cut(s)	1048
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	2 cut(s)	506, 630
SduI	GDGCHC	3 cut(s)	368, 561, 1075
SfaNI	GCATC	3 cut(s)	312, 658, 805
SfcI	CTRYAG	1 cut(s)	499
Sfr274I	CTCGAG	1 cut(s)	367
SfuI	TTCGAA	1 cut(s)	883
SlaI	CTCGAG	1 cut(s)	367
SmlI	CTYRAG	4 cut(s)	278, 367, 552, 713
SmoI	CTYRAG	4 cut(s)	278, 367, 552, 713
SpeI	ACTAGT	1 cut(s)	284
SsiI	CCGC	3 cut(s)	580, 801, 990
SspMI	CTAG	4 cut(s)	285, 534, 995, 1052
SstI	GAGCTC	1 cut(s)	368
StyD4I	CCNGG	2 cut(s)	504, 628
TaaI	ACNGT	3 cut(s)	378, 739, 893
TaqI	TCGA	3 cut(s)	42, 368, 883
TfiI	GAWTC	5 cut(s)	39, 349, 603, 743, 880
Tru1I	TTAA	5 cut(s)	215, 234, 473, 492, 960
Tru9I	TTAA	5 cut(s)	215, 234, 473, 492, 960
TscAI	CASTG	4 cut(s)	121, 896, 973, 1047
TseI	GCWGC	1 cut(s)	501
TspDTI	ATGAA	7 cut(s)	46, 102, 153, 216, 595, 1041, 1075
TspGWI	ACGGA	2 cut(s)	736, 884
TspRI	CASTG	4 cut(s)	121, 896, 973, 1047
VspI	ATTAAT	1 cut(s)	234
XapI	RAATTY	4 cut(s)	130, 885, 985, 1028
XbaI	TCTAGA	1 cut(s)	994
XceI	RCATGY	2 cut(s)	317, 683
XhoI	CTCGAG	1 cut(s)	367
XmnI	GAANNNNTTC	1 cut(s)	541
XspI	CTAG	4 cut(s)	285, 534, 995, 1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.