pycom15g26810

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000792
Physical Location & Seq
Reverse (-)
21972111 .. 21973219
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g26810.1

Sequence Viewer

Length: 825 bp
ATGTCCGGGACTCATGACAGGCCAGCAAAACAGCCTAAGAACAACACTAGTAGTTGGAACTCTTGCTCCACTGACCACATAATTACTGCCAATGCTTCTTCTTCCTCCTCTTCACACCTAATTTCTTTTGAAAACTCCAACTCATCACCCCCAACCACTTCTCAGCAGTACTATGGTCTAGATTGCAGAGTTATCAAGCCAAAGAATGAAGTGGAATATTCCAATGGGAAATTGAACCCTCCAGCTTTGATTTCCCAAGGTATCTATGACCCCCAATCTTGCTCACCGAAACATGGACAAGGGATCAAGAGGGACGCTACGGTGACTAGAAGTCCTTTAGATGCTCAAGATCATGTTCTTGCTGAGAGAAAGCGCCGAGAAAATCTCAGCCAGCGGTTCATTGCTCTATCTGCCTTACTTCCAGGCCTGAAGAAGACGGACAAGGCTTCGGTCCTCGGAGATGCGATCAAGTACGTGAAACATCTTCAAGAACTTACGAAAATGCTGGAGAAACAAGCAGCCAAGAAGACTGTGGAAGCAGTGGTGTTTGTGAAGAGGACTCAGTACTCAGCGGATGATGATATATCCTCATCCGACGAGAACTCTGAGAGCTGCTCTAACCAGCCACTACCGGAAATCGAAGCAAGAGTTTCGGACAAAGAGGTCCTCATACGAATCCACAGCGAGAAAACCAAAGGATGTTTGGCAAGCATACTGAGTGAAATAGAAAAGCTTGATCTCACCATTGTTCACAGCTGTGCCTTGCCCCTTGGCAATTCAACTCTTAATATCACTGTAGTTGCTCAGGTACATAAATTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

275

Amino Acids

30.01

Weight (kDa)

8.44

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 118 - 163 4.7e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 662
AciI CCGC 2 cut(s) 394, 572
AclWI GGATC 1 cut(s) 311
AcsI RAATTY 1 cut(s) 815
AcuI CTGAAG 1 cut(s) 449
AfaI GTAC 4 cut(s) 170, 473, 566, 810
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 4 cut(s) 131, 235, 488, 780
AhdI GACNNNNNGTC 1 cut(s) 330
AhlI ACTAGT 1 cut(s) 47
AjnI CCWGG 1 cut(s) 421
AleI CACNNNNGTG 1 cut(s) 756
AloI GAACNNNNNNTCC 2 cut(s) 50, 82
AluBI AGCT 4 cut(s) 245, 612, 733, 756
AluI AGCT 4 cut(s) 245, 612, 733, 756
AlwI GGATC 1 cut(s) 311
AoxI GGCC 2 cut(s) 20, 424
ApeKI GCWGC 2 cut(s) 518, 612
ApoI RAATTY 1 cut(s) 815
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 2 cut(s) 451, 664
AsuC2I CCSGG 1 cut(s) 7
AsuHPI GGTGA 4 cut(s) 138, 276, 334, 733
AvaII GGWCC 2 cut(s) 451, 664
BbsI GAAGAC 2 cut(s) 440, 533
BbvI GCAGC 2 cut(s) 530, 599
BcgI CGANNNNNNTGC 2 cut(s) 633, 667
BciT130I CCWGG 1 cut(s) 423
BcnI CCSGG 1 cut(s) 7
BcuI ACTAGT 1 cut(s) 47
BfaI CTAG 3 cut(s) 48, 179, 327
BfmI CTRYAG 1 cut(s) 795
BfoI RGCGCY 1 cut(s) 376
BisI GCNGC 2 cut(s) 519, 613
BlsI GCNGC 2 cut(s) 520, 614
BmcAI AGTACT 2 cut(s) 170, 566
Bme1390I CCNGG 2 cut(s) 7, 423
Bme18I GGWCC 2 cut(s) 451, 664
BmeRI GACNNNNNGTC 1 cut(s) 330
BmgT120I GGNCC 2 cut(s) 451, 664
BmrFI CCNGG 2 cut(s) 7, 423
BmsI GCATC 2 cut(s) 331, 451
BpiI GAAGAC 2 cut(s) 440, 533
BplI GAGNNNNNCTC 4 cut(s) 369, 401, 599, 631
BpmI CTGGAG 2 cut(s) 225, 527
Bpu10I CCTNAGC 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 7
BsaAI YACGTR 1 cut(s) 475
BsaJI CCNNGG 3 cut(s) 256, 454, 769
BsaWI WCCGGW 1 cut(s) 631
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 399
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 3 cut(s) 256, 454, 769
BseGI GGATG 3 cut(s) 580, 590, 704
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 8 cut(s) 176, 354, 400, 575, 582, 597, 707, 818
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 2 cut(s) 530, 599
BshFI GGCC 2 cut(s) 22, 426
BsiSI CCGG 2 cut(s) 6, 632
BslFI GGGAC 2 cut(s) 22, 326
BslI CCNNNNNNNGG 1 cut(s) 293
BsmFI GGGAC 2 cut(s) 22, 326
BsnI GGCC 2 cut(s) 22, 426
Bsp143I GATC 4 cut(s) 303, 349, 465, 736
BspACI CCGC 2 cut(s) 394, 572
BspANI GGCC 2 cut(s) 22, 426
BspCNI CTCAG 8 cut(s) 175, 355, 399, 574, 581, 598, 708, 817
BspHI TCATGA 1 cut(s) 13
BspPI GGATC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 399
BssECI CCNNGG 3 cut(s) 256, 454, 769
BssMI GATC 4 cut(s) 303, 349, 465, 736
BssT1I CCWWGG 2 cut(s) 256, 769
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 3 cut(s) 322, 532, 796
Bst6I CTCTTC 2 cut(s) 115, 548
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 3 cut(s) 24, 392, 709
BstDEI CTNAG 9 cut(s) 36, 162, 363, 386, 561, 568, 606, 716, 804
BstF5I GGATG 3 cut(s) 580, 590, 704
BstH2I RGCGCY 1 cut(s) 376
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 4 cut(s) 306, 352, 468, 739
BstMBI GATC 4 cut(s) 303, 349, 465, 736
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 2 cut(s) 5, 421
BstSFI CTRYAG 1 cut(s) 795
BstV1I GCAGC 2 cut(s) 530, 599
BstV2I GAAGAC 2 cut(s) 440, 533
BsuRI GGCC 2 cut(s) 22, 426
BtsCI GGATG 3 cut(s) 580, 590, 704
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 3 cut(s) 69, 546, 792
Cac8I GCNNGC 3 cut(s) 24, 392, 709
CciI TCATGA 1 cut(s) 13
CfoI GCGC 1 cut(s) 375
Cfr13I GGNCC 2 cut(s) 451, 664
CseI GACGC 1 cut(s) 323
Csp6I GTAC 4 cut(s) 169, 472, 565, 809
CviAII CATG 3 cut(s) 14, 293, 353
CviQI GTAC 4 cut(s) 169, 472, 565, 809
DdeI CTNAG 9 cut(s) 36, 162, 363, 386, 561, 568, 606, 716, 804
DpnI GATC 4 cut(s) 305, 351, 467, 738
DpnII GATC 4 cut(s) 303, 349, 465, 736
DrdI GACNNNNNNGTC 1 cut(s) 662
DriI GACNNNNNGTC 1 cut(s) 330
DseDI GACNNNNNNGTC 1 cut(s) 662
Eam1104I CTCTTC 2 cut(s) 115, 548
Eam1105I GACNNNNNGTC 1 cut(s) 330
EarI CTCTTC 2 cut(s) 115, 548
Eco130I CCWWGG 2 cut(s) 256, 769
Eco147I AGGCCT 1 cut(s) 426
Eco47I GGWCC 2 cut(s) 451, 664
Eco57I CTGAAG 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 664
EcoRII CCWGG 1 cut(s) 421
EcoT14I CCWWGG 2 cut(s) 256, 769
ErhI CCWWGG 2 cut(s) 256, 769
FaeI CATG 3 cut(s) 17, 296, 356
FaqI GGGAC 2 cut(s) 22, 326
FatI CATG 3 cut(s) 13, 292, 352
Fnu4HI GCNGC 2 cut(s) 519, 613
FokI GGATG 3 cut(s) 577, 587, 711
Fsp4HI GCNGC 2 cut(s) 519, 613
FspBI CTAG 3 cut(s) 48, 179, 327
GlaI GCGC 1 cut(s) 374
GluI GCNGC 2 cut(s) 519, 613
GsuI CTGGAG 2 cut(s) 225, 527
HaeII RGCGCY 1 cut(s) 376
HaeIII GGCC 2 cut(s) 22, 426
HapII CCGG 2 cut(s) 6, 632
HgaI GACGC 1 cut(s) 323
HhaI GCGC 1 cut(s) 375
Hin1II CATG 3 cut(s) 17, 296, 356
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HindIII AAGCTT 1 cut(s) 731
HinfI GANTC 3 cut(s) 10, 559, 675
HpaII CCGG 2 cut(s) 6, 632
HphI GGTGA 4 cut(s) 138, 276, 334, 733
Hpy166II GTNNAC 1 cut(s) 751
Hpy188I TCNGA 4 cut(s) 458, 595, 607, 655
Hpy188III TCNNGA 5 cut(s) 14, 179, 307, 347, 488
Hpy8I GTNNAC 1 cut(s) 751
Hpy99I CGWCG 1 cut(s) 599
HpyCH4III ACNGT 3 cut(s) 322, 532, 796
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 9 cut(s) 36, 162, 363, 386, 561, 568, 606, 716, 804
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 3 cut(s) 17, 296, 356
HspAI GCGC 1 cut(s) 373
Kzo9I GATC 4 cut(s) 303, 349, 465, 736
LmnI GCTCC 1 cut(s) 71
Lsp1109I GCAGC 2 cut(s) 530, 599
LweI GCATC 2 cut(s) 331, 451
MaeI CTAG 3 cut(s) 48, 179, 327
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 1 cut(s) 322
MalI GATC 4 cut(s) 305, 351, 467, 738
MboI GATC 4 cut(s) 303, 349, 465, 736
MboII GAAGA 8 cut(s) 90, 93, 102, 442, 445, 476, 538, 565
MluCI AATT 5 cut(s) 81, 120, 230, 775, 815
MlyI GAGTC 2 cut(s) 4, 553
MmeI TCCRAC 3 cut(s) 35, 162, 618
MnlI CCTC 9 cut(s) 115, 118, 249, 303, 464, 549, 598, 655, 677
MseI TTAA 1 cut(s) 786
MslI CAYNNNNRTG 1 cut(s) 756
MspA1I CMGCKG 3 cut(s) 394, 572, 756
MspI CCGG 2 cut(s) 6, 632
MspR9I CCNGG 2 cut(s) 7, 423
MvaI CCWGG 1 cut(s) 423
MwoI GCNNNNNNNGC 1 cut(s) 410
NciI CCSGG 1 cut(s) 7
NdeII GATC 4 cut(s) 303, 349, 465, 736
NlaIII CATG 3 cut(s) 17, 296, 356
NmeAIII GCCGAG 1 cut(s) 401
NmuCI GTSAC 1 cut(s) 322
OliI CACNNNNGTG 1 cut(s) 756
PagI TCATGA 1 cut(s) 13
PceI AGGCCT 1 cut(s) 426
PfeI GAWTC 1 cut(s) 675
PfoI TCCNGGA 1 cut(s) 5
PkrI GCNGC 2 cut(s) 520, 614
PleI GAGTC 2 cut(s) 4, 553
PpsI GAGTC 2 cut(s) 4, 553
Ppu21I YACGTR 1 cut(s) 475
PpuMI RGGWCCY 1 cut(s) 664
Psp5II RGGWCCY 1 cut(s) 664
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspPI GGNCC 2 cut(s) 451, 664
PspPPI RGGWCCY 1 cut(s) 664
PvuII CAGCTG 1 cut(s) 756
RsaI GTAC 4 cut(s) 170, 473, 566, 810
RsaNI GTAC 4 cut(s) 169, 472, 565, 809
RseI CAYNNNNRTG 1 cut(s) 756
SaqAI TTAA 1 cut(s) 786
SatI GCNGC 2 cut(s) 519, 613
Sau3AI GATC 4 cut(s) 303, 349, 465, 736
Sau96I GGNCC 2 cut(s) 451, 664
ScaI AGTACT 2 cut(s) 170, 566
SchI GAGTC 2 cut(s) 4, 553
ScrFI CCNGG 2 cut(s) 7, 423
SetI ASST 9 cut(s) 120, 247, 262, 477, 614, 666, 735, 758, 810
SfaNI GCATC 2 cut(s) 331, 451
SfcI CTRYAG 1 cut(s) 795
SinI GGWCC 2 cut(s) 451, 664
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
SpeI ACTAGT 1 cut(s) 47
Sse9I AATT 5 cut(s) 81, 120, 230, 775, 815
SseBI AGGCCT 1 cut(s) 426
SsiI CCGC 2 cut(s) 394, 572
SspI AATATT 1 cut(s) 218
SspMI CTAG 3 cut(s) 48, 179, 327
StuI AGGCCT 1 cut(s) 426
StyD4I CCNGG 2 cut(s) 5, 421
StyI CCWWGG 2 cut(s) 256, 769
TaaI ACNGT 3 cut(s) 322, 532, 796
TaiI ACGT 1 cut(s) 477
TaqI TCGA 1 cut(s) 639
TaqII GACCGA 1 cut(s) 439
TasI AATT 5 cut(s) 81, 120, 230, 775, 815
TatI WGTACW 2 cut(s) 168, 564
TfiI GAWTC 1 cut(s) 675
Tru1I TTAA 1 cut(s) 786
Tru9I TTAA 1 cut(s) 786
TscAI CASTG 3 cut(s) 76, 546, 799
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 2 cut(s) 518, 612
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 2 cut(s) 222, 388
TspGWI ACGGA 1 cut(s) 452
TspRI CASTG 3 cut(s) 76, 546, 799
VpaK11BI GGWCC 2 cut(s) 451, 664
XapI RAATTY 1 cut(s) 815
XbaI TCTAGA 1 cut(s) 178
XcmI CCANNNNNNNNNTGG 2 cut(s) 529, 700
XspI CTAG 3 cut(s) 48, 179, 327
ZrmI AGTACT 2 cut(s) 170, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.